HEADER RNA 14-AUG-17 5OR0 TITLE NMR DERIVED MODEL OF THE 5'-SPLICE SITE OF SMN2 IN COMPLEX WITH THE TITLE 2 5'-END OF U1 SNRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(P*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS 5'-SPLICE SITE, SMN2, SMALL MUSCULAR ATROPHY, RNA EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.CAMPAGNE,A.CLERY,F.H.ALLAIN REVDAT 4 14-JUN-23 5OR0 1 REMARK REVDAT 3 08-MAY-19 5OR0 1 REMARK REVDAT 2 22-NOV-17 5OR0 1 JRNL REVDAT 1 30-AUG-17 5OR0 0 JRNL AUTH M.SIVARAMAKRISHNAN,K.D.MCCARTHY,S.CAMPAGNE,S.HUBER,S.MEIER, JRNL AUTH 2 A.AUGUSTIN,T.HECKEL,H.MEISTERMANN,M.N.HUG,P.BIRRER,A.MOURSY, JRNL AUTH 3 S.KHAWAJA,R.SCHMUCKI,N.BERNTENIS,N.GIROUD,S.GOLLING, JRNL AUTH 4 M.TZOUROS,B.BANFAI,G.DURAN-PACHECO,J.LAMERZ,Y.HSIU LIU, JRNL AUTH 5 T.LUEBBERS,H.RATNI,M.EBELING,A.CLERY,S.PAUSHKIN,A.R.KRAINER, JRNL AUTH 6 F.H.ALLAIN,F.METZGER JRNL TITL BINDING TO SMN2 PRE-MRNA-PROTEIN COMPLEX ELICITS SPECIFICITY JRNL TITL 2 FOR SMALL MOLECULE SPLICING MODIFIERS. JRNL REF NAT COMMUN V. 8 1476 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29133793 JRNL DOI 10.1038/S41467-017-01559-4 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006224. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : ATMOSPHERIC BAR REMARK 210 SAMPLE CONTENTS : 1 MM RNA (5' REMARK 210 -R(P*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), 1 MM RNA (5'- REMARK 210 R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3'), 10 MM DEUTERATED MES, REMARK 210 50 MM SODIUM CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-13C HSQC AROMATIC; 2D 1H- REMARK 210 13C HSQC ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 U B 22 O4' U B 22 C4' -0.081 REMARK 500 2 U B 22 O4' U B 22 C4' -0.085 REMARK 500 3 U B 22 O4' U B 22 C4' -0.083 REMARK 500 4 U B 22 O4' U B 22 C4' -0.082 REMARK 500 5 U B 22 O4' U B 22 C4' -0.083 REMARK 500 6 U B 22 O4' U B 22 C4' -0.083 REMARK 500 7 U B 22 O4' U B 22 C4' -0.083 REMARK 500 8 U B 22 O4' U B 22 C4' -0.082 REMARK 500 9 U B 22 O4' U B 22 C4' -0.083 REMARK 500 10 U B 22 O4' U B 22 C4' -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 A A 1 C5' - C4' - O4' ANGL. DEV. = 6.9 DEGREES REMARK 500 1 A A 1 C1' - O4' - C4' ANGL. DEV. = 7.2 DEGREES REMARK 500 1 U A 2 O4' - C4' - C3' ANGL. DEV. = -7.8 DEGREES REMARK 500 1 U A 2 C1' - O4' - C4' ANGL. DEV. = 7.7 DEGREES REMARK 500 1 A A 3 C5' - C4' - O4' ANGL. DEV. = 12.7 DEGREES REMARK 500 1 A A 3 C1' - O4' - C4' ANGL. DEV. = 7.5 DEGREES REMARK 500 1 C A 4 O4' - C4' - C3' ANGL. DEV. = -6.5 DEGREES REMARK 500 1 C A 4 C1' - O4' - C4' ANGL. DEV. = 8.1 DEGREES REMARK 500 1 A A 7 C1' - O4' - C4' ANGL. DEV. = 8.1 DEGREES REMARK 500 1 C A 8 O4' - C4' - C3' ANGL. DEV. = -7.8 DEGREES REMARK 500 1 C A 8 C1' - O4' - C4' ANGL. DEV. = 7.9 DEGREES REMARK 500 1 C A 9 O4' - C4' - C3' ANGL. DEV. = -6.7 DEGREES REMARK 500 1 C A 9 C1' - O4' - C4' ANGL. DEV. = 7.7 DEGREES REMARK 500 1 U A 10 O4' - C4' - C3' ANGL. DEV. = -8.7 DEGREES REMARK 500 1 U A 10 C1' - O4' - C4' ANGL. DEV. = 7.6 DEGREES REMARK 500 1 G A 11 O4' - C4' - C3' ANGL. DEV. = -7.8 DEGREES REMARK 500 1 G A 11 C1' - O4' - C4' ANGL. DEV. = 7.8 DEGREES REMARK 500 1 G A 11 C6 - N1 - C2 ANGL. DEV. = -6.6 DEGREES REMARK 500 1 G A 11 N1 - C2 - N3 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 G A 11 C5 - C6 - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 G B 12 O4' - C4' - C3' ANGL. DEV. = -8.2 DEGREES REMARK 500 1 G B 12 C1' - O4' - C4' ANGL. DEV. = 7.8 DEGREES REMARK 500 1 G B 12 C6 - N1 - C2 ANGL. DEV. = -6.6 DEGREES REMARK 500 1 G B 12 N1 - C2 - N3 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 G B 12 C5 - C6 - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 G B 13 O4' - C4' - C3' ANGL. DEV. = -6.5 DEGREES REMARK 500 1 G B 13 C1' - O4' - C4' ANGL. DEV. = 7.7 DEGREES REMARK 500 1 G B 13 C6 - N1 - C2 ANGL. DEV. = -6.6 DEGREES REMARK 500 1 G B 13 N1 - C2 - N3 ANGL. DEV. = 5.3 DEGREES REMARK 500 1 G B 13 C5 - C6 - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 A B 14 C1' - O4' - C4' ANGL. DEV. = 7.1 DEGREES REMARK 500 1 G B 15 O4' - C4' - C3' ANGL. DEV. = -6.6 DEGREES REMARK 500 1 G B 15 C1' - O4' - C4' ANGL. DEV. = 7.8 DEGREES REMARK 500 1 G B 15 C6 - N1 - C2 ANGL. DEV. = -6.5 DEGREES REMARK 500 1 G B 15 N1 - C2 - N3 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 G B 15 C5 - C6 - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 U B 16 O4' - C4' - C3' ANGL. DEV. = -6.3 DEGREES REMARK 500 1 U B 16 C1' - O4' - C4' ANGL. DEV. = 8.3 DEGREES REMARK 500 1 A B 17 O4' - C4' - C3' ANGL. DEV. = -7.0 DEGREES REMARK 500 1 A B 17 C1' - O4' - C4' ANGL. DEV. = 7.8 DEGREES REMARK 500 1 A B 18 O4' - C4' - C3' ANGL. DEV. = -7.1 DEGREES REMARK 500 1 A B 18 C1' - O4' - C4' ANGL. DEV. = 7.8 DEGREES REMARK 500 1 G B 19 O4' - C4' - C3' ANGL. DEV. = -8.6 DEGREES REMARK 500 1 G B 19 C1' - O4' - C4' ANGL. DEV. = 7.5 DEGREES REMARK 500 1 G B 19 C6 - N1 - C2 ANGL. DEV. = -6.6 DEGREES REMARK 500 1 G B 19 N1 - C2 - N3 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 G B 19 C5 - C6 - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 U B 20 O4' - C4' - C3' ANGL. DEV. = -9.1 DEGREES REMARK 500 1 U B 20 C5' - C4' - O4' ANGL. DEV. = 6.8 DEGREES REMARK 500 1 U B 20 C1' - O4' - C4' ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 540 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34171 RELATED DB: BMRB REMARK 900 NMR DERIVED MODEL OF THE 5'-SPLICE SITE OF SMN2 IN COMPLEX WITH THE REMARK 900 5'-END OF U1 SNRNA DBREF 5OR0 A 1 11 PDB 5OR0 5OR0 1 11 DBREF 5OR0 B 12 22 PDB 5OR0 5OR0 12 22 SEQRES 1 A 11 A U A C PSU PSU A C C U G SEQRES 1 B 11 G G A G U A A G U C U HET PSU A 5 30 HET PSU A 6 30 HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE FORMUL 1 PSU 2(C9 H13 N2 O9 P) LINK O3' C A 4 P PSU A 5 1555 1555 1.61 LINK O3' PSU A 5 P PSU A 6 1555 1555 1.61 LINK O3' PSU A 6 P A A 7 1555 1555 1.60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1