HEADER TRANSFERASE 16-AUG-17 5ORN TITLE CRYSTAL STRUCTURE OF AURORA-A KINASE IN COMPLEX WITH AN ALLOSTERICALLY TITLE 2 BINDING FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: AURORA KINASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AURORA 2,AURORA/IPL1-RELATED KINASE 1,HARK1,BREAST TUMOR- COMPND 5 AMPLIFIED KINASE,SERINE/THREONINE-PROTEIN KINASE 15,SERINE/THREONINE- COMPND 6 PROTEIN KINASE 6,SERINE/THREONINE-PROTEIN KINASE AURORA-A; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AURKA, AIK, AIRK1, ARK1, AURA, AYK1, BTAK, IAK1, STK15, STK6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, ALLOSTERIC INHIBITOR, FRAGMENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.MCINTYRE,P.M.COLLINS,F.VON DELFT,R.BAYLISS REVDAT 2 29-NOV-17 5ORN 1 JRNL REVDAT 1 01-NOV-17 5ORN 0 JRNL AUTH P.J.MCINTYRE,P.M.COLLINS,L.VRZAL,K.BIRCHALL,L.H.ARNOLD, JRNL AUTH 2 C.MPAMHANGA,P.J.COOMBS,S.G.BURGESS,M.W.RICHARDS,A.WINTER, JRNL AUTH 3 V.VEVERKA,F.V.DELFT,A.MERRITT,R.BAYLISS JRNL TITL CHARACTERIZATION OF THREE DRUGGABLE HOT-SPOTS IN THE JRNL TITL 2 AURORA-A/TPX2 INTERACTION USING BIOCHEMICAL, BIOPHYSICAL, JRNL TITL 3 AND FRAGMENT-BASED APPROACHES. JRNL REF ACS CHEM. BIOL. V. 12 2906 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 29045126 JRNL DOI 10.1021/ACSCHEMBIO.7B00537 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4936 22.3835 -12.0451 REMARK 3 T TENSOR REMARK 3 T11: 0.4678 T22: 0.4651 REMARK 3 T33: 0.4872 T12: -0.0175 REMARK 3 T13: -0.0168 T23: -0.1927 REMARK 3 L TENSOR REMARK 3 L11: 0.2111 L22: 0.1854 REMARK 3 L33: 0.3909 L12: 0.1811 REMARK 3 L13: 0.3016 L23: 0.2076 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: 0.0154 S13: -0.2218 REMARK 3 S21: 0.0938 S22: 0.1660 S23: -0.4093 REMARK 3 S31: 0.1052 S32: 0.1726 S33: 0.0026 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4935 20.3993 -17.0912 REMARK 3 T TENSOR REMARK 3 T11: 0.6057 T22: 0.5959 REMARK 3 T33: 0.5313 T12: 0.0210 REMARK 3 T13: -0.0514 T23: -0.1651 REMARK 3 L TENSOR REMARK 3 L11: 0.0070 L22: 0.2986 REMARK 3 L33: 0.8206 L12: -0.0187 REMARK 3 L13: 0.0283 L23: -0.3128 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: 0.2427 S13: -0.5657 REMARK 3 S21: -0.9164 S22: -0.2911 S23: -0.0307 REMARK 3 S31: 0.1025 S32: -0.5011 S33: -0.0033 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0132 34.8918 -10.8178 REMARK 3 T TENSOR REMARK 3 T11: 0.4552 T22: 0.4365 REMARK 3 T33: 0.3661 T12: 0.0054 REMARK 3 T13: -0.0656 T23: -0.0882 REMARK 3 L TENSOR REMARK 3 L11: 1.0732 L22: 1.0736 REMARK 3 L33: 0.2293 L12: 0.1671 REMARK 3 L13: -0.2660 L23: 0.3199 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.1507 S13: -0.0012 REMARK 3 S21: -0.1897 S22: 0.1239 S23: -0.0055 REMARK 3 S31: -0.1776 S32: -0.0090 S33: 0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3385 26.2348 -12.5391 REMARK 3 T TENSOR REMARK 3 T11: 0.4747 T22: 0.4043 REMARK 3 T33: 0.7324 T12: 0.0397 REMARK 3 T13: -0.1359 T23: -0.0924 REMARK 3 L TENSOR REMARK 3 L11: 0.0293 L22: 0.0196 REMARK 3 L33: 0.4899 L12: -0.0065 REMARK 3 L13: -0.0134 L23: -0.0380 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: 0.0454 S13: -0.2953 REMARK 3 S21: -0.5570 S22: 0.0124 S23: 0.5405 REMARK 3 S31: -0.1026 S32: 0.1875 S33: -0.0028 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9819 32.3535 -3.9024 REMARK 3 T TENSOR REMARK 3 T11: 0.4298 T22: 0.4830 REMARK 3 T33: 0.5174 T12: -0.0257 REMARK 3 T13: -0.0799 T23: -0.1571 REMARK 3 L TENSOR REMARK 3 L11: 0.2811 L22: 0.2524 REMARK 3 L33: 0.3058 L12: -0.0309 REMARK 3 L13: -0.1428 L23: -0.1919 REMARK 3 S TENSOR REMARK 3 S11: 0.0820 S12: 0.2933 S13: -0.0639 REMARK 3 S21: 0.0767 S22: -0.1671 S23: 0.3088 REMARK 3 S31: -0.0085 S32: -0.3513 S33: -0.0007 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 325 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7210 30.5136 7.5884 REMARK 3 T TENSOR REMARK 3 T11: 0.5639 T22: 0.4350 REMARK 3 T33: 0.5281 T12: -0.0491 REMARK 3 T13: 0.1809 T23: -0.1897 REMARK 3 L TENSOR REMARK 3 L11: 1.4361 L22: 0.6243 REMARK 3 L33: 0.2095 L12: 0.8386 REMARK 3 L13: 0.2940 L23: 0.0214 REMARK 3 S TENSOR REMARK 3 S11: -0.3918 S12: -0.2127 S13: 0.3704 REMARK 3 S21: 0.4699 S22: -0.1776 S23: 0.8188 REMARK 3 S31: 0.4470 S32: -0.3755 S33: -0.0859 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 343 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1052 45.4614 -4.6037 REMARK 3 T TENSOR REMARK 3 T11: 0.4889 T22: 0.4772 REMARK 3 T33: 0.6581 T12: 0.0553 REMARK 3 T13: -0.1046 T23: -0.1021 REMARK 3 L TENSOR REMARK 3 L11: 0.2387 L22: 0.7241 REMARK 3 L33: 0.6423 L12: -0.3330 REMARK 3 L13: -0.0741 L23: 0.5201 REMARK 3 S TENSOR REMARK 3 S11: 0.1360 S12: 0.1108 S13: 0.3093 REMARK 3 S21: -0.0568 S22: -0.1165 S23: 0.6046 REMARK 3 S31: -0.4999 S32: -0.5137 S33: -0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ORN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33968 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 45.312 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.48 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.78 REMARK 200 R MERGE FOR SHELL (I) : 1.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5: 0.5 M NACL: 0.2 M REMARK 280 MGCL2: 32.5 % V/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.66333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 117.32667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.99500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 146.65833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.33167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.66333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 117.32667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 146.65833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 87.99500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 29.33167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 339 CG CD CE NZ REMARK 470 GLU A 354 CG CD OE1 OE2 REMARK 470 ARG A 375 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 532 O HOH A 557 2.01 REMARK 500 OE2 GLU A 230 O HOH A 501 2.09 REMARK 500 OD1 ASN A 367 OG SER A 369 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 283 CA - C - O ANGL. DEV. = -14.4 DEGREES REMARK 500 MET A 305 CA - CB - CG ANGL. DEV. = -19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 202 32.20 -156.60 REMARK 500 ALA A 203 -34.20 86.45 REMARK 500 SER A 226 -57.03 78.02 REMARK 500 ARG A 251 44.81 33.68 REMARK 500 ASP A 256 43.40 -140.74 REMARK 500 ASP A 274 79.97 54.92 REMARK 500 ARG A 304 -176.23 -67.84 REMARK 500 ASP A 307 -157.55 -141.59 REMARK 500 LEU A 364 57.50 -94.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 261 OD1 REMARK 620 2 ASP A 274 OD2 94.2 REMARK 620 3 ADP A 401 O3B 173.5 91.9 REMARK 620 4 ADP A 401 O2A 93.7 98.3 87.4 REMARK 620 5 HOH A 517 O 84.6 177.7 89.2 83.7 REMARK 620 6 HOH A 519 O 93.3 95.4 84.0 164.0 82.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 401 O1B REMARK 620 2 HOH A 514 O 86.6 REMARK 620 3 HOH A 518 O 94.5 158.3 REMARK 620 4 HOH A 549 O 80.9 118.8 82.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A5E A 404 DBREF 5ORN A 127 391 UNP O14965 AURKA_HUMAN 127 391 SEQADV 5ORN ALA A 290 UNP O14965 CYS 290 CONFLICT SEQRES 1 A 265 GLN TRP ALA LEU GLU ASP PHE GLU ILE GLY ARG PRO LEU SEQRES 2 A 265 GLY LYS GLY LYS PHE GLY ASN VAL TYR LEU ALA ARG GLU SEQRES 3 A 265 LYS GLN SER LYS PHE ILE LEU ALA LEU LYS VAL LEU PHE SEQRES 4 A 265 LYS ALA GLN LEU GLU LYS ALA GLY VAL GLU HIS GLN LEU SEQRES 5 A 265 ARG ARG GLU VAL GLU ILE GLN SER HIS LEU ARG HIS PRO SEQRES 6 A 265 ASN ILE LEU ARG LEU TYR GLY TYR PHE HIS ASP ALA THR SEQRES 7 A 265 ARG VAL TYR LEU ILE LEU GLU TYR ALA PRO LEU GLY THR SEQRES 8 A 265 VAL TYR ARG GLU LEU GLN LYS LEU SER LYS PHE ASP GLU SEQRES 9 A 265 GLN ARG THR ALA THR TYR ILE THR GLU LEU ALA ASN ALA SEQRES 10 A 265 LEU SER TYR CYS HIS SER LYS ARG VAL ILE HIS ARG ASP SEQRES 11 A 265 ILE LYS PRO GLU ASN LEU LEU LEU GLY SER ALA GLY GLU SEQRES 12 A 265 LEU LYS ILE ALA ASP PHE GLY TRP SER VAL HIS ALA PRO SEQRES 13 A 265 SER SER ARG ARG THR TPO LEU ALA GLY THR LEU ASP TYR SEQRES 14 A 265 LEU PRO PRO GLU MET ILE GLU GLY ARG MET HIS ASP GLU SEQRES 15 A 265 LYS VAL ASP LEU TRP SER LEU GLY VAL LEU CYS TYR GLU SEQRES 16 A 265 PHE LEU VAL GLY LYS PRO PRO PHE GLU ALA ASN THR TYR SEQRES 17 A 265 GLN GLU THR TYR LYS ARG ILE SER ARG VAL GLU PHE THR SEQRES 18 A 265 PHE PRO ASP PHE VAL THR GLU GLY ALA ARG ASP LEU ILE SEQRES 19 A 265 SER ARG LEU LEU LYS HIS ASN PRO SER GLN ARG PRO MET SEQRES 20 A 265 LEU ARG GLU VAL LEU GLU HIS PRO TRP ILE THR ALA ASN SEQRES 21 A 265 SER SER LYS PRO SER MODRES 5ORN TPO A 288 THR MODIFIED RESIDUE HET TPO A 288 11 HET ADP A 401 27 HET MG A 402 1 HET MG A 403 1 HET A5E A 404 12 HETNAM TPO PHOSPHOTHREONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM A5E 3-THIOPHEN-2-YL-4,5-DIHYDRO-1~{H}-PYRIDAZIN-6-ONE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG 2(MG 2+) FORMUL 5 A5E C8 H8 N2 O S FORMUL 6 HOH *59(H2 O) HELIX 1 AA1 ALA A 129 GLU A 131 5 3 HELIX 2 AA2 LYS A 166 GLY A 173 1 8 HELIX 3 AA3 VAL A 174 LEU A 188 1 15 HELIX 4 AA4 THR A 217 SER A 226 1 10 HELIX 5 AA5 ASP A 229 SER A 249 1 21 HELIX 6 AA6 LYS A 258 GLU A 260 5 3 HELIX 7 AA7 PRO A 297 GLU A 302 1 6 HELIX 8 AA8 LYS A 309 GLY A 325 1 17 HELIX 9 AA9 THR A 333 ARG A 343 1 11 HELIX 10 AB1 THR A 353 LEU A 364 1 12 HELIX 11 AB2 ASN A 367 ARG A 371 5 5 HELIX 12 AB3 MET A 373 GLU A 379 1 7 HELIX 13 AB4 HIS A 380 SER A 387 1 8 SHEET 1 AA1 5 PHE A 133 LYS A 141 0 SHEET 2 AA1 5 ASN A 146 GLU A 152 -1 O VAL A 147 N LEU A 139 SHEET 3 AA1 5 PHE A 157 PHE A 165 -1 O LEU A 161 N TYR A 148 SHEET 4 AA1 5 ARG A 205 LEU A 210 -1 O LEU A 210 N ALA A 160 SHEET 5 AA1 5 LEU A 196 HIS A 201 -1 N GLY A 198 O ILE A 209 SHEET 1 AA2 2 VAL A 252 ILE A 253 0 SHEET 2 AA2 2 VAL A 279 HIS A 280 -1 O VAL A 279 N ILE A 253 SHEET 1 AA3 2 LEU A 262 LEU A 264 0 SHEET 2 AA3 2 LEU A 270 ILE A 272 -1 O LYS A 271 N LEU A 263 LINK OD1 ASN A 261 MG MG A 402 1555 1555 2.16 LINK OD2 ASP A 274 MG MG A 402 1555 1555 2.08 LINK C THR A 287 N TPO A 288 1555 1555 1.33 LINK C TPO A 288 N LEU A 289 1555 1555 1.34 LINK O1B ADP A 401 MG MG A 403 1555 1555 2.17 LINK O3B ADP A 401 MG MG A 402 1555 1555 1.97 LINK O2A ADP A 401 MG MG A 402 1555 1555 1.98 LINK MG MG A 402 O HOH A 517 1555 1555 1.97 LINK MG MG A 402 O HOH A 519 1555 1555 1.98 LINK MG MG A 403 O HOH A 514 1555 1555 2.07 LINK MG MG A 403 O HOH A 518 1555 1555 2.03 LINK MG MG A 403 O HOH A 549 1555 1555 2.56 CISPEP 1 ALA A 281 PRO A 282 0 -5.20 SITE 1 AC1 25 GLY A 140 GLY A 142 LYS A 143 GLY A 145 SITE 2 AC1 25 VAL A 147 ALA A 160 LYS A 162 LEU A 194 SITE 3 AC1 25 GLU A 211 ALA A 213 THR A 217 GLU A 260 SITE 4 AC1 25 ASN A 261 LEU A 263 ASP A 274 MG A 402 SITE 5 AC1 25 MG A 403 HOH A 514 HOH A 515 HOH A 517 SITE 6 AC1 25 HOH A 518 HOH A 519 HOH A 545 HOH A 546 SITE 7 AC1 25 HOH A 549 SITE 1 AC2 5 ASN A 261 ASP A 274 ADP A 401 HOH A 517 SITE 2 AC2 5 HOH A 519 SITE 1 AC3 5 ASP A 274 ADP A 401 HOH A 514 HOH A 518 SITE 2 AC3 5 HOH A 549 SITE 1 AC4 3 TRP A 128 LEU A 159 TYR A 197 CRYST1 82.380 82.380 175.990 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012139 0.007008 0.000000 0.00000 SCALE2 0.000000 0.014017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005682 0.00000