HEADER PROTEIN BINDING 21-AUG-17 5OT8 TITLE STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN (PBP) NOCT-G97S MUTANT TITLE 2 FROM A. TUMEFACIENS C58 IN COMPLEX WITH OCTOPINE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOPALINE-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: HHHHHH : TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM STR. C58; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 GENE: NOCT, ATU6027, AGR_PTI_67; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AGROBACTERIUM TUMEFACIENS, ARGININE, BACTERIAL PROTEINS, DNA, KEYWDS 2 BACTERIAL, GENE EXPRESSION REGULATION, GENES, LIGANDS, PLANT TUMORS, KEYWDS 3 PLASMIDS, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.VIGOUROUX,S.MORERA REVDAT 3 17-JAN-24 5OT8 1 REMARK REVDAT 2 03-JAN-18 5OT8 1 JRNL REVDAT 1 20-DEC-17 5OT8 0 JRNL AUTH A.VIGOUROUX,A.EL SAHILI,J.LANG,M.AUMONT-NICAISE,Y.DESSAUX, JRNL AUTH 2 D.FAURE,S.MORERA JRNL TITL STRUCTURAL BASIS FOR HIGH SPECIFICITY OF OCTOPINE BINDING IN JRNL TITL 2 THE PLANT PATHOGEN AGROBACTERIUM TUMEFACIENS. JRNL REF SCI REP V. 7 18033 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29269740 JRNL DOI 10.1038/S41598-017-18243-8 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1184 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2879 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2150 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2735 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3928 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.95170 REMARK 3 B22 (A**2) : 0.95170 REMARK 3 B33 (A**2) : -1.90350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.290 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.284 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.190 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.314 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.198 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4061 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5471 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1423 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 99 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 579 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4061 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 546 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4477 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.76 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.74 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 4.0988 21.6137 -11.2280 REMARK 3 T TENSOR REMARK 3 T11: -0.1568 T22: -0.2091 REMARK 3 T33: -0.1490 T12: -0.0207 REMARK 3 T13: -0.0094 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.5676 L22: 1.4054 REMARK 3 L33: 1.3210 L12: -0.3819 REMARK 3 L13: -0.4654 L23: 0.1479 REMARK 3 S TENSOR REMARK 3 S11: 0.0762 S12: 0.0455 S13: 0.0886 REMARK 3 S21: 0.0428 S22: -0.0419 S23: 0.0591 REMARK 3 S31: -0.0726 S32: -0.0608 S33: -0.0343 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 27.4346 48.1750 0.4719 REMARK 3 T TENSOR REMARK 3 T11: -0.1743 T22: -0.1830 REMARK 3 T33: -0.3019 T12: -0.1291 REMARK 3 T13: -0.0218 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 2.8956 L22: 2.3843 REMARK 3 L33: 1.9360 L12: -0.1991 REMARK 3 L13: -0.2781 L23: 0.4624 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: -0.2495 S13: 0.2245 REMARK 3 S21: 0.1328 S22: 0.0052 S23: 0.1088 REMARK 3 S31: 0.0233 S32: 0.2598 S33: 0.0157 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OT8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006317. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.006 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.71500 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ITP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4K, 0.1 M TRIS PH8, 0.1 M REMARK 280 LISO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.35333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.67667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 25 REMARK 465 LYS A 26 REMARK 465 GLN A 283 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 MET B 25 REMARK 465 LYS B 26 REMARK 465 ASP B 27 REMARK 465 GLN B 283 REMARK 465 HIS B 284 REMARK 465 HIS B 285 REMARK 465 HIS B 286 REMARK 465 HIS B 287 REMARK 465 HIS B 288 REMARK 465 HIS B 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 94 51.56 -142.21 REMARK 500 ASP A 247 55.47 -94.28 REMARK 500 ALA B 94 51.70 -142.72 REMARK 500 ILE B 98 80.64 -69.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 435 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 436 DISTANCE = 7.97 ANGSTROMS REMARK 525 HOH B 414 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH B 415 DISTANCE = 6.96 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6DB A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6DB B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ITP RELATED DB: PDB DBREF 5OT8 A 26 283 UNP P35120 NOCT_AGRFC 26 283 DBREF 5OT8 B 26 283 UNP P35120 NOCT_AGRFC 26 283 SEQADV 5OT8 MET A 25 UNP P35120 INITIATING METHIONINE SEQADV 5OT8 SER A 97 UNP P35120 GLY 97 ENGINEERED MUTATION SEQADV 5OT8 HIS A 284 UNP P35120 EXPRESSION TAG SEQADV 5OT8 HIS A 285 UNP P35120 EXPRESSION TAG SEQADV 5OT8 HIS A 286 UNP P35120 EXPRESSION TAG SEQADV 5OT8 HIS A 287 UNP P35120 EXPRESSION TAG SEQADV 5OT8 HIS A 288 UNP P35120 EXPRESSION TAG SEQADV 5OT8 HIS A 289 UNP P35120 EXPRESSION TAG SEQADV 5OT8 MET B 25 UNP P35120 INITIATING METHIONINE SEQADV 5OT8 SER B 97 UNP P35120 GLY 97 ENGINEERED MUTATION SEQADV 5OT8 HIS B 284 UNP P35120 EXPRESSION TAG SEQADV 5OT8 HIS B 285 UNP P35120 EXPRESSION TAG SEQADV 5OT8 HIS B 286 UNP P35120 EXPRESSION TAG SEQADV 5OT8 HIS B 287 UNP P35120 EXPRESSION TAG SEQADV 5OT8 HIS B 288 UNP P35120 EXPRESSION TAG SEQADV 5OT8 HIS B 289 UNP P35120 EXPRESSION TAG SEQRES 1 A 265 MET LYS ASP TYR LYS SER ILE THR ILE ALA THR GLU GLY SEQRES 2 A 265 SER TYR ALA PRO TYR ASN PHE LYS ASP ALA GLY GLY LYS SEQRES 3 A 265 LEU ILE GLY PHE ASP ILE ASP LEU GLY ASN ASP LEU CYS SEQRES 4 A 265 LYS ARG MET ASN ILE GLU CYS LYS PHE VAL GLU GLN ALA SEQRES 5 A 265 TRP ASP GLY ILE ILE PRO SER LEU THR ALA GLY ARG TYR SEQRES 6 A 265 ASP ALA ILE MET ALA ALA MET SER ILE GLN PRO ALA ARG SEQRES 7 A 265 GLU LYS VAL ILE ALA PHE SER ARG PRO TYR LEU LEU THR SEQRES 8 A 265 PRO MET THR PHE LEU THR THR ALA ASP SER PRO LEU LEU SEQRES 9 A 265 LYS THR GLN VAL ALA ILE GLU ASN LEU PRO LEU ASP ASN SEQRES 10 A 265 ILE THR PRO GLU GLN LYS ALA GLU LEU ASP LYS PHE THR SEQRES 11 A 265 LYS ILE PHE GLU GLY VAL LYS PHE GLY VAL GLN ALA GLY SEQRES 12 A 265 THR SER HIS GLU ALA PHE MET LYS GLN MET MET PRO SER SEQRES 13 A 265 VAL GLN ILE SER THR TYR ASP THR ILE ASP ASN VAL VAL SEQRES 14 A 265 MET ASP LEU LYS ALA GLY ARG ILE ASP ALA SER LEU ALA SEQRES 15 A 265 SER VAL SER PHE LEU LYS PRO LEU THR ASP LYS PRO ASP SEQRES 16 A 265 ASN LYS ASP LEU LYS MET PHE GLY PRO ARG MET THR GLY SEQRES 17 A 265 GLY LEU PHE GLY LYS GLY VAL GLY VAL GLY ILE ARG LYS SEQRES 18 A 265 GLU ASP ALA ASP LEU LYS ALA LEU PHE ASP LYS ALA ILE SEQRES 19 A 265 ASP ALA ALA ILE ALA ASP GLY THR VAL GLN LYS LEU SER SEQRES 20 A 265 GLN GLN TRP PHE GLY TYR ASP ALA SER PRO LYS GLN HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS SEQRES 1 B 265 MET LYS ASP TYR LYS SER ILE THR ILE ALA THR GLU GLY SEQRES 2 B 265 SER TYR ALA PRO TYR ASN PHE LYS ASP ALA GLY GLY LYS SEQRES 3 B 265 LEU ILE GLY PHE ASP ILE ASP LEU GLY ASN ASP LEU CYS SEQRES 4 B 265 LYS ARG MET ASN ILE GLU CYS LYS PHE VAL GLU GLN ALA SEQRES 5 B 265 TRP ASP GLY ILE ILE PRO SER LEU THR ALA GLY ARG TYR SEQRES 6 B 265 ASP ALA ILE MET ALA ALA MET SER ILE GLN PRO ALA ARG SEQRES 7 B 265 GLU LYS VAL ILE ALA PHE SER ARG PRO TYR LEU LEU THR SEQRES 8 B 265 PRO MET THR PHE LEU THR THR ALA ASP SER PRO LEU LEU SEQRES 9 B 265 LYS THR GLN VAL ALA ILE GLU ASN LEU PRO LEU ASP ASN SEQRES 10 B 265 ILE THR PRO GLU GLN LYS ALA GLU LEU ASP LYS PHE THR SEQRES 11 B 265 LYS ILE PHE GLU GLY VAL LYS PHE GLY VAL GLN ALA GLY SEQRES 12 B 265 THR SER HIS GLU ALA PHE MET LYS GLN MET MET PRO SER SEQRES 13 B 265 VAL GLN ILE SER THR TYR ASP THR ILE ASP ASN VAL VAL SEQRES 14 B 265 MET ASP LEU LYS ALA GLY ARG ILE ASP ALA SER LEU ALA SEQRES 15 B 265 SER VAL SER PHE LEU LYS PRO LEU THR ASP LYS PRO ASP SEQRES 16 B 265 ASN LYS ASP LEU LYS MET PHE GLY PRO ARG MET THR GLY SEQRES 17 B 265 GLY LEU PHE GLY LYS GLY VAL GLY VAL GLY ILE ARG LYS SEQRES 18 B 265 GLU ASP ALA ASP LEU LYS ALA LEU PHE ASP LYS ALA ILE SEQRES 19 B 265 ASP ALA ALA ILE ALA ASP GLY THR VAL GLN LYS LEU SER SEQRES 20 B 265 GLN GLN TRP PHE GLY TYR ASP ALA SER PRO LYS GLN HIS SEQRES 21 B 265 HIS HIS HIS HIS HIS HET 6DB A 301 17 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET SO4 A 305 5 HET CL A 306 1 HET CL A 307 1 HET CL A 308 1 HET CL A 309 1 HET CL A 310 1 HET CL A 311 1 HET CL A 312 1 HET PEG A 313 7 HET CL B 301 1 HET CL B 302 1 HET 6DB B 303 17 HETNAM 6DB OCTOPINE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 6DB 2(C9 H18 N4 O4) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 SO4 O4 S 2- FORMUL 8 CL 9(CL 1-) FORMUL 15 PEG C4 H10 O3 FORMUL 19 HOH *51(H2 O) HELIX 1 AA1 GLY A 53 ASN A 67 1 15 HELIX 2 AA2 GLY A 79 ALA A 86 1 8 HELIX 3 AA3 GLN A 99 LYS A 104 1 6 HELIX 4 AA4 SER A 125 THR A 130 5 6 HELIX 5 AA5 THR A 143 GLU A 158 1 16 HELIX 6 AA6 THR A 168 MET A 178 1 11 HELIX 7 AA7 THR A 188 ALA A 198 1 11 HELIX 8 AA8 VAL A 208 LYS A 217 1 10 HELIX 9 AA9 PRO A 218 LYS A 221 5 4 HELIX 10 AB1 GLY A 232 GLY A 236 5 5 HELIX 11 AB2 ASP A 247 ASP A 264 1 18 HELIX 12 AB3 GLY A 265 GLY A 276 1 12 HELIX 13 AB4 GLY B 53 ASN B 67 1 15 HELIX 14 AB5 ALA B 76 ASP B 78 5 3 HELIX 15 AB6 GLY B 79 ALA B 86 1 8 HELIX 16 AB7 ALA B 101 VAL B 105 5 5 HELIX 17 AB8 SER B 125 THR B 130 5 6 HELIX 18 AB9 THR B 143 GLU B 158 1 16 HELIX 19 AC1 THR B 168 MET B 178 1 11 HELIX 20 AC2 THR B 188 ALA B 198 1 11 HELIX 21 AC3 VAL B 208 LYS B 217 1 10 HELIX 22 AC4 PRO B 218 LYS B 221 5 4 HELIX 23 AC5 ASP B 247 ASP B 264 1 18 HELIX 24 AC6 GLY B 265 GLY B 276 1 12 SHEET 1 AA1 3 GLU A 69 GLU A 74 0 SHEET 2 AA1 3 SER A 30 THR A 35 1 N ILE A 33 O LYS A 71 SHEET 3 AA1 3 ALA A 91 ILE A 92 1 O ALA A 91 N ALA A 34 SHEET 1 AA2 2 PHE A 44 LYS A 45 0 SHEET 2 AA2 2 LEU A 51 ILE A 52 -1 O ILE A 52 N PHE A 44 SHEET 1 AA3 2 ALA A 107 PHE A 108 0 SHEET 2 AA3 2 GLY A 242 ILE A 243 -1 O ILE A 243 N ALA A 107 SHEET 1 AA4 4 ASN A 136 PRO A 138 0 SHEET 2 AA4 4 LEU A 223 THR A 231 1 O ARG A 229 N LEU A 137 SHEET 3 AA4 4 MET A 117 THR A 122 -1 N MET A 117 O MET A 230 SHEET 4 AA4 4 ALA A 203 SER A 207 -1 O ALA A 206 N THR A 118 SHEET 1 AA5 2 PHE A 162 GLN A 165 0 SHEET 2 AA5 2 ILE A 183 TYR A 186 1 O SER A 184 N VAL A 164 SHEET 1 AA6 3 GLU B 69 GLU B 74 0 SHEET 2 AA6 3 SER B 30 THR B 35 1 N ILE B 33 O LYS B 71 SHEET 3 AA6 3 ALA B 91 ILE B 92 1 O ALA B 91 N ALA B 34 SHEET 1 AA7 2 PHE B 44 LYS B 45 0 SHEET 2 AA7 2 LEU B 51 ILE B 52 -1 O ILE B 52 N PHE B 44 SHEET 1 AA8 2 ALA B 107 PHE B 108 0 SHEET 2 AA8 2 GLY B 242 ILE B 243 -1 O ILE B 243 N ALA B 107 SHEET 1 AA9 4 ASN B 136 PRO B 138 0 SHEET 2 AA9 4 LEU B 223 THR B 231 1 O ARG B 229 N LEU B 137 SHEET 3 AA9 4 MET B 117 THR B 122 -1 N MET B 117 O MET B 230 SHEET 4 AA9 4 ALA B 203 SER B 207 -1 O ALA B 206 N THR B 118 SHEET 1 AB1 2 PHE B 162 GLN B 165 0 SHEET 2 AB1 2 ILE B 183 TYR B 186 1 O SER B 184 N VAL B 164 CISPEP 1 ALA A 40 PRO A 41 0 4.65 CISPEP 2 ALA B 40 PRO B 41 0 4.68 SITE 1 AC1 14 GLU A 36 TYR A 39 TRP A 77 ALA A 94 SITE 2 AC1 14 ALA A 95 SER A 97 ARG A 102 MET A 117 SITE 3 AC1 14 GLN A 165 THR A 168 SER A 169 HIS A 170 SITE 4 AC1 14 SER A 207 EDO A 304 SITE 1 AC2 1 PHE A 72 SITE 1 AC3 3 ILE A 98 PRO A 100 GLU A 103 SITE 1 AC4 5 SER A 97 THR A 115 MET A 117 SER A 169 SITE 2 AC4 5 6DB A 301 SITE 1 AC5 4 PRO A 138 ASN A 141 THR A 143 GLN A 146 SITE 1 AC6 2 LYS A 50 LEU A 51 SITE 1 AC7 1 LYS B 147 SITE 1 AC8 3 TYR A 186 ASP A 187 ASN A 191 SITE 1 AC9 2 GLN A 272 ASP A 278 SITE 1 AD1 3 ARG A 65 GLN B 176 MET B 177 SITE 1 AD2 5 ARG A 65 ASN A 67 LYS A 256 HOH A 419 SITE 2 AD2 5 GLN B 176 SITE 1 AD3 2 SER B 97 MET B 117 SITE 1 AD4 1 ARG B 229 SITE 1 AD5 14 GLU B 36 TYR B 39 ASN B 43 TRP B 77 SITE 2 AD5 14 ALA B 94 ALA B 95 SER B 97 ARG B 102 SITE 3 AD5 14 MET B 117 GLN B 165 THR B 168 SER B 169 SITE 4 AD5 14 HIS B 170 SER B 207 CRYST1 115.720 115.720 38.030 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008642 0.004989 0.000000 0.00000 SCALE2 0.000000 0.009978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026295 0.00000