HEADER PROTEIN BINDING 21-AUG-17 5OTC TITLE STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN (PBP) NOCT FROM TITLE 2 AGROBACTERIUM TUMEFACIENS C58 IN COMPLEX WITH NOROCTOPINIC ACID. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOPALINE-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: HHHHHH : TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM (STRAIN C58 / ATCC 33970); SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58 / ATCC 33970; SOURCE 5 GENE: NOCT, ATU6027, AGR_PTI_67; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AGROBACTERIUM TUMEFACIENS, ARGININE, BACTERIAL PROTEINS, DNA, KEYWDS 2 BACTERIAL, GENE EXPRESSION REGULATION, GENES, LIGANDS, PLANT TUMORS, KEYWDS 3 PLASMIDS, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.VIGOUROUX,S.MORERA REVDAT 3 17-JAN-24 5OTC 1 REMARK REVDAT 2 03-JAN-18 5OTC 1 JRNL REVDAT 1 20-DEC-17 5OTC 0 JRNL AUTH A.VIGOUROUX,A.EL SAHILI,J.LANG,M.AUMONT-NICAISE,Y.DESSAUX, JRNL AUTH 2 D.FAURE,S.MORERA JRNL TITL STRUCTURAL BASIS FOR HIGH SPECIFICITY OF OCTOPINE BINDING IN JRNL TITL 2 THE PLANT PATHOGEN AGROBACTERIUM TUMEFACIENS. JRNL REF SCI REP V. 7 18033 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29269740 JRNL DOI 10.1038/S41598-017-18243-8 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1392 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2919 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2590 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2773 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3933 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.97590 REMARK 3 B22 (A**2) : 1.97590 REMARK 3 B33 (A**2) : -3.95190 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.290 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.233 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.168 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.249 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.175 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4066 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5464 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1434 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 100 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 576 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4066 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 540 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4738 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.91 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.31 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -40.5023 -18.7037 -0.8449 REMARK 3 T TENSOR REMARK 3 T11: -0.2861 T22: -0.2849 REMARK 3 T33: -0.2838 T12: -0.0534 REMARK 3 T13: -0.0152 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.6631 L22: 1.7781 REMARK 3 L33: 1.4113 L12: -0.5574 REMARK 3 L13: -0.5373 L23: 0.4666 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: -0.0188 S13: 0.0508 REMARK 3 S21: 0.0292 S22: 0.0846 S23: -0.2534 REMARK 3 S31: 0.0073 S32: 0.1754 S33: -0.0368 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -29.3013 14.8932 -12.1757 REMARK 3 T TENSOR REMARK 3 T11: -0.2121 T22: -0.3115 REMARK 3 T33: -0.3853 T12: -0.1126 REMARK 3 T13: 0.0239 T23: 0.1446 REMARK 3 L TENSOR REMARK 3 L11: 2.8185 L22: 3.7601 REMARK 3 L33: 2.0384 L12: 0.4123 REMARK 3 L13: -0.4037 L23: -0.7051 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: 0.2010 S13: -0.0245 REMARK 3 S21: -0.0834 S22: -0.0232 S23: -0.2759 REMARK 3 S31: -0.2273 S32: -0.3245 S33: -0.0364 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27945 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.19600 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ITP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4K, 100 MM TRIS PH 8.5 AND 0.1 REMARK 280 MM LISO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.20000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 25 REMARK 465 LYS A 26 REMARK 465 ASP A 27 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 MET B 25 REMARK 465 LYS B 26 REMARK 465 GLN B 283 REMARK 465 HIS B 284 REMARK 465 HIS B 285 REMARK 465 HIS B 286 REMARK 465 HIS B 287 REMARK 465 HIS B 288 REMARK 465 HIS B 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 38 40.61 -146.54 REMARK 500 ALA A 94 58.38 -146.67 REMARK 500 LYS A 237 69.27 -118.01 REMARK 500 SER B 38 41.22 -146.19 REMARK 500 ALA B 94 59.12 -147.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AQK A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AQK B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 302 DBREF 5OTC A 26 283 UNP P35120 NOCT_AGRFC 26 283 DBREF 5OTC B 26 283 UNP P35120 NOCT_AGRFC 26 283 SEQADV 5OTC MET A 25 UNP P35120 INITIATING METHIONINE SEQADV 5OTC HIS A 284 UNP P35120 EXPRESSION TAG SEQADV 5OTC HIS A 285 UNP P35120 EXPRESSION TAG SEQADV 5OTC HIS A 286 UNP P35120 EXPRESSION TAG SEQADV 5OTC HIS A 287 UNP P35120 EXPRESSION TAG SEQADV 5OTC HIS A 288 UNP P35120 EXPRESSION TAG SEQADV 5OTC HIS A 289 UNP P35120 EXPRESSION TAG SEQADV 5OTC MET B 25 UNP P35120 INITIATING METHIONINE SEQADV 5OTC HIS B 284 UNP P35120 EXPRESSION TAG SEQADV 5OTC HIS B 285 UNP P35120 EXPRESSION TAG SEQADV 5OTC HIS B 286 UNP P35120 EXPRESSION TAG SEQADV 5OTC HIS B 287 UNP P35120 EXPRESSION TAG SEQADV 5OTC HIS B 288 UNP P35120 EXPRESSION TAG SEQADV 5OTC HIS B 289 UNP P35120 EXPRESSION TAG SEQRES 1 A 265 MET LYS ASP TYR LYS SER ILE THR ILE ALA THR GLU GLY SEQRES 2 A 265 SER TYR ALA PRO TYR ASN PHE LYS ASP ALA GLY GLY LYS SEQRES 3 A 265 LEU ILE GLY PHE ASP ILE ASP LEU GLY ASN ASP LEU CYS SEQRES 4 A 265 LYS ARG MET ASN ILE GLU CYS LYS PHE VAL GLU GLN ALA SEQRES 5 A 265 TRP ASP GLY ILE ILE PRO SER LEU THR ALA GLY ARG TYR SEQRES 6 A 265 ASP ALA ILE MET ALA ALA MET GLY ILE GLN PRO ALA ARG SEQRES 7 A 265 GLU LYS VAL ILE ALA PHE SER ARG PRO TYR LEU LEU THR SEQRES 8 A 265 PRO MET THR PHE LEU THR THR ALA ASP SER PRO LEU LEU SEQRES 9 A 265 LYS THR GLN VAL ALA ILE GLU ASN LEU PRO LEU ASP ASN SEQRES 10 A 265 ILE THR PRO GLU GLN LYS ALA GLU LEU ASP LYS PHE THR SEQRES 11 A 265 LYS ILE PHE GLU GLY VAL LYS PHE GLY VAL GLN ALA GLY SEQRES 12 A 265 THR SER HIS GLU ALA PHE MET LYS GLN MET MET PRO SER SEQRES 13 A 265 VAL GLN ILE SER THR TYR ASP THR ILE ASP ASN VAL VAL SEQRES 14 A 265 MET ASP LEU LYS ALA GLY ARG ILE ASP ALA SER LEU ALA SEQRES 15 A 265 SER VAL SER PHE LEU LYS PRO LEU THR ASP LYS PRO ASP SEQRES 16 A 265 ASN LYS ASP LEU LYS MET PHE GLY PRO ARG MET THR GLY SEQRES 17 A 265 GLY LEU PHE GLY LYS GLY VAL GLY VAL GLY ILE ARG LYS SEQRES 18 A 265 GLU ASP ALA ASP LEU LYS ALA LEU PHE ASP LYS ALA ILE SEQRES 19 A 265 ASP ALA ALA ILE ALA ASP GLY THR VAL GLN LYS LEU SER SEQRES 20 A 265 GLN GLN TRP PHE GLY TYR ASP ALA SER PRO LYS GLN HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS SEQRES 1 B 265 MET LYS ASP TYR LYS SER ILE THR ILE ALA THR GLU GLY SEQRES 2 B 265 SER TYR ALA PRO TYR ASN PHE LYS ASP ALA GLY GLY LYS SEQRES 3 B 265 LEU ILE GLY PHE ASP ILE ASP LEU GLY ASN ASP LEU CYS SEQRES 4 B 265 LYS ARG MET ASN ILE GLU CYS LYS PHE VAL GLU GLN ALA SEQRES 5 B 265 TRP ASP GLY ILE ILE PRO SER LEU THR ALA GLY ARG TYR SEQRES 6 B 265 ASP ALA ILE MET ALA ALA MET GLY ILE GLN PRO ALA ARG SEQRES 7 B 265 GLU LYS VAL ILE ALA PHE SER ARG PRO TYR LEU LEU THR SEQRES 8 B 265 PRO MET THR PHE LEU THR THR ALA ASP SER PRO LEU LEU SEQRES 9 B 265 LYS THR GLN VAL ALA ILE GLU ASN LEU PRO LEU ASP ASN SEQRES 10 B 265 ILE THR PRO GLU GLN LYS ALA GLU LEU ASP LYS PHE THR SEQRES 11 B 265 LYS ILE PHE GLU GLY VAL LYS PHE GLY VAL GLN ALA GLY SEQRES 12 B 265 THR SER HIS GLU ALA PHE MET LYS GLN MET MET PRO SER SEQRES 13 B 265 VAL GLN ILE SER THR TYR ASP THR ILE ASP ASN VAL VAL SEQRES 14 B 265 MET ASP LEU LYS ALA GLY ARG ILE ASP ALA SER LEU ALA SEQRES 15 B 265 SER VAL SER PHE LEU LYS PRO LEU THR ASP LYS PRO ASP SEQRES 16 B 265 ASN LYS ASP LEU LYS MET PHE GLY PRO ARG MET THR GLY SEQRES 17 B 265 GLY LEU PHE GLY LYS GLY VAL GLY VAL GLY ILE ARG LYS SEQRES 18 B 265 GLU ASP ALA ASP LEU LYS ALA LEU PHE ASP LYS ALA ILE SEQRES 19 B 265 ASP ALA ALA ILE ALA ASP GLY THR VAL GLN LYS LEU SER SEQRES 20 B 265 GLN GLN TRP PHE GLY TYR ASP ALA SER PRO LYS GLN HIS SEQRES 21 B 265 HIS HIS HIS HIS HIS HET AQK A 301 13 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET CL A 308 1 HET CL A 309 1 HET CL A 310 1 HET CL A 311 1 HET CL A 312 1 HET CL A 313 1 HET CL A 314 1 HET CL A 315 1 HET CL A 316 1 HET CL A 317 1 HET PEG A 318 7 HET PGE A 319 10 HET AQK B 301 13 HET CL B 302 1 HETNAM AQK (2~{S})-5-AZANYL-2-(2-HYDROXY-2-OXOETHYLAMINO)PENTANOIC HETNAM 2 AQK ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 AQK 2(C7 H14 N2 O4) FORMUL 4 EDO 6(C2 H6 O2) FORMUL 10 CL 11(CL 1-) FORMUL 20 PEG C4 H10 O3 FORMUL 21 PGE C6 H14 O4 FORMUL 24 HOH *89(H2 O) HELIX 1 AA1 GLY A 53 ASN A 67 1 15 HELIX 2 AA2 ALA A 76 ASP A 78 5 3 HELIX 3 AA3 GLY A 79 ALA A 86 1 8 HELIX 4 AA4 GLN A 99 LYS A 104 1 6 HELIX 5 AA5 SER A 125 THR A 130 5 6 HELIX 6 AA6 THR A 143 PHE A 157 1 15 HELIX 7 AA7 THR A 168 MET A 178 1 11 HELIX 8 AA8 THR A 188 ALA A 198 1 11 HELIX 9 AA9 VAL A 208 LYS A 217 1 10 HELIX 10 AB1 PRO A 218 LYS A 221 5 4 HELIX 11 AB2 GLY A 232 GLY A 236 5 5 HELIX 12 AB3 ASP A 247 ASP A 264 1 18 HELIX 13 AB4 GLY A 265 GLY A 276 1 12 HELIX 14 AB5 GLY B 53 ASN B 67 1 15 HELIX 15 AB6 ALA B 76 ASP B 78 5 3 HELIX 16 AB7 GLY B 79 ALA B 86 1 8 HELIX 17 AB8 GLN B 99 LYS B 104 1 6 HELIX 18 AB9 SER B 125 THR B 130 5 6 HELIX 19 AC1 THR B 143 PHE B 157 1 15 HELIX 20 AC2 THR B 168 MET B 178 1 11 HELIX 21 AC3 THR B 188 ALA B 198 1 11 HELIX 22 AC4 VAL B 208 LYS B 217 1 10 HELIX 23 AC5 PRO B 218 LYS B 221 5 4 HELIX 24 AC6 GLY B 232 GLY B 236 5 5 HELIX 25 AC7 ASP B 247 ASP B 264 1 18 HELIX 26 AC8 GLY B 265 GLY B 276 1 12 SHEET 1 AA1 5 GLU A 69 GLU A 74 0 SHEET 2 AA1 5 SER A 30 THR A 35 1 N ILE A 33 O LYS A 71 SHEET 3 AA1 5 ALA A 91 ILE A 92 1 O ALA A 91 N ALA A 34 SHEET 4 AA1 5 GLY A 242 ILE A 243 -1 O GLY A 242 N ILE A 92 SHEET 5 AA1 5 ALA A 107 PHE A 108 -1 N ALA A 107 O ILE A 243 SHEET 1 AA2 2 PHE A 44 LYS A 45 0 SHEET 2 AA2 2 LEU A 51 ILE A 52 -1 O ILE A 52 N PHE A 44 SHEET 1 AA3 4 ASN A 136 PRO A 138 0 SHEET 2 AA3 4 LEU A 223 THR A 231 1 O ARG A 229 N LEU A 137 SHEET 3 AA3 4 MET A 117 THR A 122 -1 N MET A 117 O MET A 230 SHEET 4 AA3 4 SER A 204 SER A 207 -1 O ALA A 206 N THR A 118 SHEET 1 AA4 2 PHE A 162 GLN A 165 0 SHEET 2 AA4 2 ILE A 183 TYR A 186 1 O SER A 184 N VAL A 164 SHEET 1 AA5 5 GLU B 69 GLU B 74 0 SHEET 2 AA5 5 SER B 30 THR B 35 1 N ILE B 33 O LYS B 71 SHEET 3 AA5 5 ALA B 91 ILE B 92 1 O ALA B 91 N ALA B 34 SHEET 4 AA5 5 GLY B 242 ILE B 243 -1 O GLY B 242 N ILE B 92 SHEET 5 AA5 5 ALA B 107 PHE B 108 -1 N ALA B 107 O ILE B 243 SHEET 1 AA6 2 PHE B 44 LYS B 45 0 SHEET 2 AA6 2 LEU B 51 ILE B 52 -1 O ILE B 52 N PHE B 44 SHEET 1 AA7 4 ASN B 136 PRO B 138 0 SHEET 2 AA7 4 LEU B 223 THR B 231 1 O ARG B 229 N LEU B 137 SHEET 3 AA7 4 MET B 117 THR B 122 -1 N MET B 117 O MET B 230 SHEET 4 AA7 4 ALA B 203 SER B 207 -1 O ALA B 206 N THR B 118 SHEET 1 AA8 2 PHE B 162 GLN B 165 0 SHEET 2 AA8 2 ILE B 183 TYR B 186 1 O SER B 184 N VAL B 164 CISPEP 1 ALA A 40 PRO A 41 0 4.34 CISPEP 2 ALA B 40 PRO B 41 0 4.33 SITE 1 AC1 12 GLU A 36 TYR A 39 TYR A 42 TRP A 77 SITE 2 AC1 12 ALA A 95 GLY A 97 ARG A 102 GLN A 165 SITE 3 AC1 12 THR A 168 SER A 169 HIS A 170 SER A 207 SITE 1 AC2 5 GLU A 246 ASP A 247 ALA A 248 ASP A 249 SITE 2 AC2 5 HOH A 423 SITE 1 AC3 6 LYS A 104 GLU A 145 SER A 184 THR A 185 SITE 2 AC3 6 LYS A 245 HOH A 408 SITE 1 AC4 4 ASP A 151 LYS A 155 GLU A 158 HOH A 416 SITE 1 AC5 1 ASP A 264 SITE 1 AC6 2 ARG A 229 TYR A 277 SITE 1 AC7 6 ASP A 190 VAL A 193 PHE A 210 LEU A 214 SITE 2 AC7 6 CL A 317 HOH A 443 SITE 1 AC8 2 SER A 125 LYS A 129 SITE 1 AC9 5 VAL A 164 GLN A 165 HIS A 170 ILE A 189 SITE 2 AC9 5 LEU A 205 SITE 1 AD1 3 THR A 118 GLY A 227 ARG A 229 SITE 1 AD2 3 TYR A 186 ASP A 187 ASN A 191 SITE 1 AD3 6 MET A 93 ALA A 94 ALA A 95 MET A 96 SITE 2 AD3 6 TYR A 112 GLY A 240 SITE 1 AD4 2 THR A 122 ASP A 202 SITE 1 AD5 3 GLU A 103 SER A 180 LYS A 237 SITE 1 AD6 3 ALA A 40 ASP A 190 EDO A 307 SITE 1 AD7 3 THR A 168 ALA A 172 GLN A 176 SITE 1 AD8 5 ALA A 86 GLY A 87 PRO A 126 THR A 130 SITE 2 AD8 5 ARG A 244 SITE 1 AD9 12 GLU B 36 TYR B 39 TRP B 77 ALA B 95 SITE 2 AD9 12 GLY B 97 ARG B 102 MET B 117 GLN B 165 SITE 3 AD9 12 THR B 168 SER B 169 HIS B 170 SER B 207 SITE 1 AE1 1 ASP B 140 CRYST1 113.990 113.990 37.800 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008773 0.005065 0.000000 0.00000 SCALE2 0.000000 0.010130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026455 0.00000