HEADER HYDROLASE 24-AUG-17 5OUN TITLE NMR SOLUTION STRUCTURE OF THE EXTERNAL DII DOMAIN OF RVB2 FROM TITLE 2 SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUVB-LIKE PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RUVBL2,TIP49-HOMOLOGY PROTEIN 2,TIP49B HOMOLOG; COMPND 5 EC: 3.6.4.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: RVB2, TIH2, TIP49B, YPL235W, P1060; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATPASE CHAPERON RVB1 RVB2 RUVBL1 RUVBL2 NMR SNORNP, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ROUILLON,B.BRAGANTINI,B.CHARPENTIER,X.MANIVAL,M.QUINTERNET REVDAT 5 14-JUN-23 5OUN 1 REMARK REVDAT 4 08-MAY-19 5OUN 1 REMARK REVDAT 3 19-SEP-18 5OUN 1 JRNL REVDAT 2 04-APR-18 5OUN 1 JRNL REVDAT 1 28-MAR-18 5OUN 0 JRNL AUTH B.BRAGANTINI,C.ROUILLON,B.CHARPENTIER,X.MANIVAL,M.QUINTERNET JRNL TITL NMR ASSIGNMENT AND SOLUTION STRUCTURE OF THE EXTERNAL DII JRNL TITL 2 DOMAIN OF THE YEAST RVB2 PROTEIN. JRNL REF BIOMOL NMR ASSIGN V. 12 243 2018 JRNL REFN ESSN 1874-270X JRNL PMID 29569106 JRNL DOI 10.1007/S12104-018-9816-5 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006376. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] RVB2DII, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HNHA; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 H(CCO)NH; 3D C(CO)NH; 2D 1H-1H REMARK 210 NOESY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.2, CARA, CYANA REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 130 -53.40 72.93 REMARK 500 1 HIS A 153 84.20 -152.64 REMARK 500 1 ARG A 204 -70.19 -76.44 REMARK 500 1 PHE A 206 -161.92 -123.91 REMARK 500 1 ALA A 214 53.25 -92.98 REMARK 500 1 THR A 219 42.36 -81.21 REMARK 500 1 ARG A 220 61.41 -116.60 REMARK 500 1 PRO A 225 98.62 -59.91 REMARK 500 1 GLN A 230 133.87 68.14 REMARK 500 1 LYS A 233 128.48 70.15 REMARK 500 2 THR A 150 -36.56 -38.72 REMARK 500 2 ASP A 211 41.40 -77.99 REMARK 500 2 TYR A 212 37.25 -159.28 REMARK 500 2 ASP A 213 41.34 -82.13 REMARK 500 2 ARG A 220 57.39 -90.03 REMARK 500 2 GLN A 223 107.16 -56.03 REMARK 500 2 LYS A 231 71.17 -118.03 REMARK 500 3 MET A 131 125.81 65.63 REMARK 500 3 GLU A 132 -153.57 58.19 REMARK 500 3 SER A 205 34.75 -99.52 REMARK 500 3 ALA A 207 79.79 -117.91 REMARK 500 3 ARG A 208 -162.76 -111.49 REMARK 500 3 ASP A 211 34.17 -96.37 REMARK 500 3 TYR A 212 -52.41 71.70 REMARK 500 3 ASP A 213 72.13 57.90 REMARK 500 3 CYS A 224 -54.76 -173.49 REMARK 500 3 GLU A 226 89.16 56.80 REMARK 500 4 MET A 131 83.54 56.85 REMARK 500 4 THR A 150 -51.27 71.12 REMARK 500 4 HIS A 153 54.99 -144.23 REMARK 500 4 LYS A 183 60.66 61.82 REMARK 500 4 SER A 205 152.52 -49.09 REMARK 500 4 ALA A 207 66.94 62.92 REMARK 500 4 ARG A 208 114.43 57.55 REMARK 500 4 ASP A 213 76.49 69.59 REMARK 500 4 THR A 219 35.54 -90.54 REMARK 500 4 LYS A 231 45.39 -80.91 REMARK 500 4 ARG A 232 34.39 -93.97 REMARK 500 5 SER A 209 126.47 73.08 REMARK 500 5 TYR A 212 -49.52 -132.04 REMARK 500 5 ASP A 213 92.28 65.16 REMARK 500 5 ARG A 220 49.66 -87.99 REMARK 500 5 VAL A 222 135.86 -172.57 REMARK 500 5 LYS A 231 58.06 -111.71 REMARK 500 5 LYS A 233 74.83 52.50 REMARK 500 6 PRO A 129 91.71 -68.74 REMARK 500 6 HIS A 130 86.49 61.02 REMARK 500 6 LEU A 202 -60.93 -104.69 REMARK 500 6 ARG A 204 -75.58 -139.33 REMARK 500 6 ASP A 213 -51.38 -122.77 REMARK 500 REMARK 500 THIS ENTRY HAS 146 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34173 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF THE EXTERNAL DII DOMAIN OF RVB2 FROM REMARK 900 SACCHAROMYCES CEREVISIAE DBREF 5OUN A 132 234 UNP Q12464 RUVB2_YEAST 132 234 SEQADV 5OUN GLY A 128 UNP Q12464 EXPRESSION TAG SEQADV 5OUN PRO A 129 UNP Q12464 EXPRESSION TAG SEQADV 5OUN HIS A 130 UNP Q12464 EXPRESSION TAG SEQADV 5OUN MET A 131 UNP Q12464 EXPRESSION TAG SEQRES 1 A 107 GLY PRO HIS MET GLU THR GLU LEU ILE GLU GLY GLU VAL SEQRES 2 A 107 VAL GLU ILE GLN ILE ASP ARG SER ILE THR GLY GLY HIS SEQRES 3 A 107 LYS GLN GLY LYS LEU THR ILE LYS THR THR ASP MET GLU SEQRES 4 A 107 THR ILE TYR GLU LEU GLY ASN LYS MET ILE ASP GLY LEU SEQRES 5 A 107 THR LYS GLU LYS VAL LEU ALA GLY ASP VAL ILE SER ILE SEQRES 6 A 107 ASP LYS ALA SER GLY LYS ILE THR LYS LEU GLY ARG SER SEQRES 7 A 107 PHE ALA ARG SER ARG ASP TYR ASP ALA MET GLY ALA ASP SEQRES 8 A 107 THR ARG PHE VAL GLN CYS PRO GLU GLY GLU LEU GLN LYS SEQRES 9 A 107 ARG LYS THR HELIX 1 AA1 GLY A 172 LYS A 183 1 12 SHEET 1 AA1 5 GLU A 166 LEU A 171 0 SHEET 2 AA1 5 GLY A 156 LYS A 161 -1 N LEU A 158 O TYR A 169 SHEET 3 AA1 5 LEU A 135 ILE A 145 -1 N GLU A 139 O LYS A 161 SHEET 4 AA1 5 VAL A 189 ASP A 193 -1 O ILE A 192 N ILE A 136 SHEET 5 AA1 5 ILE A 199 LYS A 201 -1 O THR A 200 N SER A 191 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1