HEADER TRANSPORT PROTEIN 30-AUG-17 5OVZ TITLE HIGH RESOLUTION STRUCTURE OF THE PBP NOCT IN COMPLEX WITH NOPALINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOPALINE-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PBP NOCT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM; SOURCE 3 ORGANISM_TAXID: 357; SOURCE 4 GENE: NOCT, ATU6027, AGR_PTI_67; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD PLYSS AG KEYWDS PERIPLASMIC BINDING PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.VIGOUROUX,S.MORERA REVDAT 3 17-JAN-24 5OVZ 1 LINK REVDAT 2 29-APR-20 5OVZ 1 COMPND JRNL REVDAT 1 10-OCT-18 5OVZ 0 SPRSDE 10-OCT-18 5OVZ 4POX JRNL AUTH J.LANG,A.VIGOUROUX,S.PLANAMENTE,A.EL SAHILI,P.BLIN, JRNL AUTH 2 M.AUMONT-NICAISE,Y.DESSAUX,S.MORERA,D.FAURE JRNL TITL AGROBACTERIUM USES A UNIQUE LIGAND-BINDING MODE FOR TRAPPING JRNL TITL 2 OPINES AND ACQUIRING A COMPETITIVE ADVANTAGE IN THE NICHE JRNL TITL 3 CONSTRUCTION ON PLANT HOST. JRNL REF PLOS PATHOG. V. 10 04444 2014 JRNL REFN ESSN 1553-7374 JRNL PMID 25299655 JRNL DOI 10.1371/JOURNAL.PPAT.1004444 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2789 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4139 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2350 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3932 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 207 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3962 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70200 REMARK 3 B22 (A**2) : -0.70200 REMARK 3 B33 (A**2) : 1.40400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.100 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.091 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.101 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.092 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4110 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5525 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1441 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 101 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 585 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4110 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 547 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5066 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.29 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.34 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -40.9557 -18.7684 10.0767 REMARK 3 T TENSOR REMARK 3 T11: -0.0812 T22: -0.0672 REMARK 3 T33: -0.0726 T12: -0.0367 REMARK 3 T13: -0.0170 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.0261 L22: 1.2306 REMARK 3 L33: 1.1865 L12: -0.2246 REMARK 3 L13: -0.5228 L23: 0.4452 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: 0.0258 S13: 0.0533 REMARK 3 S21: -0.0128 S22: 0.0977 S23: -0.1975 REMARK 3 S31: 0.0093 S32: 0.1328 S33: -0.0698 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -29.2498 14.4562 -1.3112 REMARK 3 T TENSOR REMARK 3 T11: -0.0276 T22: -0.1344 REMARK 3 T33: -0.1770 T12: -0.1076 REMARK 3 T13: 0.0090 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 1.9056 L22: 1.9758 REMARK 3 L33: 1.4238 L12: 0.2047 REMARK 3 L13: -0.2026 L23: -0.2809 REMARK 3 S TENSOR REMARK 3 S11: 0.0639 S12: 0.1404 S13: -0.0526 REMARK 3 S21: -0.0509 S22: -0.0985 S23: -0.1741 REMARK 3 S31: -0.1358 S32: -0.2059 S33: 0.0345 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006452. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 224742 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 14.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.83700 REMARK 200 FOR SHELL : 1.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: 4POX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% P4000/ 0.1 M TRIS PH 8/ 0.1 M REMARK 280 LISO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.27333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.63667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 25 REMARK 465 LYS A 26 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 MET B 25 REMARK 465 LYS B 26 REMARK 465 ASP B 27 REMARK 465 HIS B 284 REMARK 465 HIS B 285 REMARK 465 HIS B 286 REMARK 465 HIS B 287 REMARK 465 HIS B 288 REMARK 465 HIS B 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 28 162.83 68.12 REMARK 500 ALA A 94 47.21 -147.94 REMARK 500 HIS A 284 19.87 55.72 REMARK 500 ALA B 94 48.28 -148.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 485 DISTANCE = 6.53 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 167 O REMARK 620 2 HOH A 552 O 98.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2W2 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2W2 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4POX RELATED DB: PDB REMARK 900 THIS IS THE SAME COMPLEX BUT AT A LOWER RESOLUTION DBREF 5OVZ A 26 283 UNP P35120 NOCT_AGRFC 26 283 DBREF 5OVZ B 26 283 UNP P35120 NOCT_AGRFC 26 283 SEQADV 5OVZ MET A 25 UNP P35120 INITIATING METHIONINE SEQADV 5OVZ HIS A 284 UNP P35120 EXPRESSION TAG SEQADV 5OVZ HIS A 285 UNP P35120 EXPRESSION TAG SEQADV 5OVZ HIS A 286 UNP P35120 EXPRESSION TAG SEQADV 5OVZ HIS A 287 UNP P35120 EXPRESSION TAG SEQADV 5OVZ HIS A 288 UNP P35120 EXPRESSION TAG SEQADV 5OVZ HIS A 289 UNP P35120 EXPRESSION TAG SEQADV 5OVZ MET B 25 UNP P35120 INITIATING METHIONINE SEQADV 5OVZ HIS B 284 UNP P35120 EXPRESSION TAG SEQADV 5OVZ HIS B 285 UNP P35120 EXPRESSION TAG SEQADV 5OVZ HIS B 286 UNP P35120 EXPRESSION TAG SEQADV 5OVZ HIS B 287 UNP P35120 EXPRESSION TAG SEQADV 5OVZ HIS B 288 UNP P35120 EXPRESSION TAG SEQADV 5OVZ HIS B 289 UNP P35120 EXPRESSION TAG SEQRES 1 A 265 MET LYS ASP TYR LYS SER ILE THR ILE ALA THR GLU GLY SEQRES 2 A 265 SER TYR ALA PRO TYR ASN PHE LYS ASP ALA GLY GLY LYS SEQRES 3 A 265 LEU ILE GLY PHE ASP ILE ASP LEU GLY ASN ASP LEU CYS SEQRES 4 A 265 LYS ARG MET ASN ILE GLU CYS LYS PHE VAL GLU GLN ALA SEQRES 5 A 265 TRP ASP GLY ILE ILE PRO SER LEU THR ALA GLY ARG TYR SEQRES 6 A 265 ASP ALA ILE MET ALA ALA MET GLY ILE GLN PRO ALA ARG SEQRES 7 A 265 GLU LYS VAL ILE ALA PHE SER ARG PRO TYR LEU LEU THR SEQRES 8 A 265 PRO MET THR PHE LEU THR THR ALA ASP SER PRO LEU LEU SEQRES 9 A 265 LYS THR GLN VAL ALA ILE GLU ASN LEU PRO LEU ASP ASN SEQRES 10 A 265 ILE THR PRO GLU GLN LYS ALA GLU LEU ASP LYS PHE THR SEQRES 11 A 265 LYS ILE PHE GLU GLY VAL LYS PHE GLY VAL GLN ALA GLY SEQRES 12 A 265 THR SER HIS GLU ALA PHE MET LYS GLN MET MET PRO SER SEQRES 13 A 265 VAL GLN ILE SER THR TYR ASP THR ILE ASP ASN VAL VAL SEQRES 14 A 265 MET ASP LEU LYS ALA GLY ARG ILE ASP ALA SER LEU ALA SEQRES 15 A 265 SER VAL SER PHE LEU LYS PRO LEU THR ASP LYS PRO ASP SEQRES 16 A 265 ASN LYS ASP LEU LYS MET PHE GLY PRO ARG MET THR GLY SEQRES 17 A 265 GLY LEU PHE GLY LYS GLY VAL GLY VAL GLY ILE ARG LYS SEQRES 18 A 265 GLU ASP ALA ASP LEU LYS ALA LEU PHE ASP LYS ALA ILE SEQRES 19 A 265 ASP ALA ALA ILE ALA ASP GLY THR VAL GLN LYS LEU SER SEQRES 20 A 265 GLN GLN TRP PHE GLY TYR ASP ALA SER PRO LYS GLN HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS SEQRES 1 B 265 MET LYS ASP TYR LYS SER ILE THR ILE ALA THR GLU GLY SEQRES 2 B 265 SER TYR ALA PRO TYR ASN PHE LYS ASP ALA GLY GLY LYS SEQRES 3 B 265 LEU ILE GLY PHE ASP ILE ASP LEU GLY ASN ASP LEU CYS SEQRES 4 B 265 LYS ARG MET ASN ILE GLU CYS LYS PHE VAL GLU GLN ALA SEQRES 5 B 265 TRP ASP GLY ILE ILE PRO SER LEU THR ALA GLY ARG TYR SEQRES 6 B 265 ASP ALA ILE MET ALA ALA MET GLY ILE GLN PRO ALA ARG SEQRES 7 B 265 GLU LYS VAL ILE ALA PHE SER ARG PRO TYR LEU LEU THR SEQRES 8 B 265 PRO MET THR PHE LEU THR THR ALA ASP SER PRO LEU LEU SEQRES 9 B 265 LYS THR GLN VAL ALA ILE GLU ASN LEU PRO LEU ASP ASN SEQRES 10 B 265 ILE THR PRO GLU GLN LYS ALA GLU LEU ASP LYS PHE THR SEQRES 11 B 265 LYS ILE PHE GLU GLY VAL LYS PHE GLY VAL GLN ALA GLY SEQRES 12 B 265 THR SER HIS GLU ALA PHE MET LYS GLN MET MET PRO SER SEQRES 13 B 265 VAL GLN ILE SER THR TYR ASP THR ILE ASP ASN VAL VAL SEQRES 14 B 265 MET ASP LEU LYS ALA GLY ARG ILE ASP ALA SER LEU ALA SEQRES 15 B 265 SER VAL SER PHE LEU LYS PRO LEU THR ASP LYS PRO ASP SEQRES 16 B 265 ASN LYS ASP LEU LYS MET PHE GLY PRO ARG MET THR GLY SEQRES 17 B 265 GLY LEU PHE GLY LYS GLY VAL GLY VAL GLY ILE ARG LYS SEQRES 18 B 265 GLU ASP ALA ASP LEU LYS ALA LEU PHE ASP LYS ALA ILE SEQRES 19 B 265 ASP ALA ALA ILE ALA ASP GLY THR VAL GLN LYS LEU SER SEQRES 20 B 265 GLN GLN TRP PHE GLY TYR ASP ALA SER PRO LYS GLN HIS SEQRES 21 B 265 HIS HIS HIS HIS HIS HET 2W2 A 301 21 HET PEG A 302 7 HET PEG A 303 7 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET NA A 308 1 HET NA A 309 1 HET NA A 310 1 HET NA A 311 1 HET 2W2 B 301 21 HET EDO B 302 4 HET EDO B 303 4 HET NA B 304 1 HET NA B 305 1 HET NA B 306 1 HETNAM 2W2 N-[(1S)-4-CARBAMIMIDAMIDO-1-CARBOXYBUTYL]-D-GLUTAMIC HETNAM 2 2W2 ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN 2W2 NOPALINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 2W2 2(C11 H20 N4 O6) FORMUL 4 PEG 2(C4 H10 O3) FORMUL 6 EDO 6(C2 H6 O2) FORMUL 10 NA 7(NA 1+) FORMUL 20 HOH *288(H2 O) HELIX 1 AA1 GLY A 53 ASN A 67 1 15 HELIX 2 AA2 GLY A 79 ALA A 86 1 8 HELIX 3 AA3 GLN A 99 LYS A 104 1 6 HELIX 4 AA4 SER A 125 THR A 130 5 6 HELIX 5 AA5 THR A 143 GLU A 158 1 16 HELIX 6 AA6 THR A 168 MET A 178 1 11 HELIX 7 AA7 THR A 188 ALA A 198 1 11 HELIX 8 AA8 VAL A 208 LYS A 217 1 10 HELIX 9 AA9 PRO A 218 LYS A 221 5 4 HELIX 10 AB1 GLY A 232 GLY A 236 5 5 HELIX 11 AB2 ASP A 247 ASP A 264 1 18 HELIX 12 AB3 GLY A 265 GLY A 276 1 12 HELIX 13 AB4 GLY B 53 ASN B 67 1 15 HELIX 14 AB5 ALA B 76 ASP B 78 5 3 HELIX 15 AB6 GLY B 79 ALA B 86 1 8 HELIX 16 AB7 ALA B 101 VAL B 105 5 5 HELIX 17 AB8 SER B 125 THR B 130 5 6 HELIX 18 AB9 THR B 143 GLU B 158 1 16 HELIX 19 AC1 THR B 168 MET B 178 1 11 HELIX 20 AC2 THR B 188 ALA B 198 1 11 HELIX 21 AC3 VAL B 208 LYS B 217 1 10 HELIX 22 AC4 PRO B 218 LYS B 221 5 4 HELIX 23 AC5 GLY B 232 GLY B 236 5 5 HELIX 24 AC6 ASP B 247 ASP B 264 1 18 HELIX 25 AC7 GLY B 265 GLY B 276 1 12 SHEET 1 AA1 5 GLU A 69 GLU A 74 0 SHEET 2 AA1 5 SER A 30 THR A 35 1 N ILE A 33 O LYS A 71 SHEET 3 AA1 5 ALA A 91 ILE A 92 1 O ALA A 91 N ALA A 34 SHEET 4 AA1 5 GLY A 242 ILE A 243 -1 O GLY A 242 N ILE A 92 SHEET 5 AA1 5 ALA A 107 PHE A 108 -1 N ALA A 107 O ILE A 243 SHEET 1 AA2 2 PHE A 44 LYS A 45 0 SHEET 2 AA2 2 LEU A 51 ILE A 52 -1 O ILE A 52 N PHE A 44 SHEET 1 AA3 4 ASN A 136 PRO A 138 0 SHEET 2 AA3 4 LEU A 223 THR A 231 1 O ARG A 229 N LEU A 137 SHEET 3 AA3 4 MET A 117 THR A 122 -1 N MET A 117 O MET A 230 SHEET 4 AA3 4 SER A 204 SER A 207 -1 O ALA A 206 N THR A 118 SHEET 1 AA4 2 PHE A 162 GLN A 165 0 SHEET 2 AA4 2 ILE A 183 TYR A 186 1 O TYR A 186 N VAL A 164 SHEET 1 AA5 5 GLU B 69 GLU B 74 0 SHEET 2 AA5 5 SER B 30 THR B 35 1 N ILE B 33 O LYS B 71 SHEET 3 AA5 5 ALA B 91 ILE B 92 1 O ALA B 91 N ALA B 34 SHEET 4 AA5 5 GLY B 242 ILE B 243 -1 O GLY B 242 N ILE B 92 SHEET 5 AA5 5 ALA B 107 PHE B 108 -1 N ALA B 107 O ILE B 243 SHEET 1 AA6 2 PHE B 44 LYS B 45 0 SHEET 2 AA6 2 LEU B 51 ILE B 52 -1 O ILE B 52 N PHE B 44 SHEET 1 AA7 4 ASN B 136 PRO B 138 0 SHEET 2 AA7 4 LEU B 223 THR B 231 1 O ARG B 229 N LEU B 137 SHEET 3 AA7 4 MET B 117 THR B 122 -1 N MET B 117 O MET B 230 SHEET 4 AA7 4 SER B 204 SER B 207 -1 O ALA B 206 N THR B 118 SHEET 1 AA8 2 PHE B 162 GLN B 165 0 SHEET 2 AA8 2 ILE B 183 TYR B 186 1 O SER B 184 N PHE B 162 LINK O GLY A 167 NA NA A 308 1555 1555 2.93 LINK NA NA A 308 O HOH A 552 1555 1555 2.68 LINK NA NA A 309 O HOH A 568 1555 1555 3.05 LINK NA NA A 310 O HOH A 423 1555 1555 3.14 LINK NA NA A 311 O HOH A 575 1555 1555 3.07 LINK O THR B 185 NA NA B 305 1555 1555 2.98 CISPEP 1 ALA A 40 PRO A 41 0 4.27 CISPEP 2 ALA B 40 PRO B 41 0 2.55 SITE 1 AC1 19 GLU A 36 TYR A 39 TYR A 42 TRP A 77 SITE 2 AC1 19 ALA A 94 ALA A 95 GLY A 97 ARG A 102 SITE 3 AC1 19 THR A 115 MET A 117 GLN A 165 THR A 168 SITE 4 AC1 19 SER A 169 HIS A 170 SER A 207 VAL A 239 SITE 5 AC1 19 HOH A 405 HOH A 410 HOH A 451 SITE 1 AC2 4 ALA A 172 LYS A 175 GLN A 176 EDO A 305 SITE 1 AC3 6 LYS A 50 LEU A 51 LYS A 71 PHE A 72 SITE 2 AC3 6 HOH A 476 HOH A 502 SITE 1 AC4 6 GLN A 99 GLY A 167 THR A 168 GLU A 171 SITE 2 AC4 6 PEG A 302 HOH A 449 SITE 1 AC5 2 LYS A 104 LYS A 175 SITE 1 AC6 5 ALA A 101 THR A 143 GLU A 145 HOH A 421 SITE 2 AC6 5 HOH A 488 SITE 1 AC7 4 ILE A 81 ARG A 102 GLY A 167 HOH A 552 SITE 1 AC8 2 LYS A 269 HOH A 568 SITE 1 AC9 1 GLN A 273 SITE 1 AD1 1 HOH A 575 SITE 1 AD2 19 GLU B 36 TYR B 39 TYR B 42 TRP B 77 SITE 2 AD2 19 ALA B 94 ALA B 95 GLY B 97 ARG B 102 SITE 3 AD2 19 THR B 115 MET B 117 GLN B 165 THR B 168 SITE 4 AD2 19 SER B 169 HIS B 170 SER B 207 VAL B 239 SITE 5 AD2 19 HOH B 402 HOH B 406 HOH B 424 SITE 1 AD3 4 ALA B 133 ILE B 134 GLU B 135 ASN B 136 SITE 1 AD4 4 GLN B 99 GLY B 167 THR B 168 GLU B 171 SITE 1 AD5 2 PRO B 138 GLN B 146 SITE 1 AD6 1 THR B 185 SITE 1 AD7 1 ARG B 229 CRYST1 114.260 114.260 37.910 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008752 0.005053 0.000000 0.00000 SCALE2 0.000000 0.010106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026378 0.00000