HEADER TRANSFERASE 04-SEP-17 5OWQ TITLE HUMAN STK10 BOUND TO DOVITINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE 10; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYMPHOCYTE-ORIENTED KINASE; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: STK10, LOK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS KINASE, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SZKLARZ,F.VON DELFT,C.BOUNTRA,S.KNAPP,A.M.EDWARDS,C.ARROWSMITH, AUTHOR 2 J.M.ELKINS REVDAT 2 24-JAN-18 5OWQ 1 SOURCE REVDAT 1 13-SEP-17 5OWQ 0 JRNL AUTH J.M.ELKINS JRNL TITL HUMAN STK10 BOUND TO DOVITINIB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 15674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 838 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1153 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.4090 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3843 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.44000 REMARK 3 B22 (A**2) : -0.89000 REMARK 3 B33 (A**2) : -1.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 6.612 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.433 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.443 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 50.880 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3990 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3690 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5440 ; 1.693 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8525 ; 1.060 ; 2.981 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 499 ; 7.346 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;36.964 ;25.166 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 638 ;18.044 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.714 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 634 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4392 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 732 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2026 ; 0.817 ; 1.768 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2025 ; 0.817 ; 1.768 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2515 ; 1.495 ; 2.647 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2516 ; 1.495 ; 2.648 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1964 ; 0.858 ; 2.050 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1965 ; 0.859 ; 2.054 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2926 ; 1.535 ; 3.055 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4387 ; 3.869 ;22.494 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4388 ; 3.869 ;22.523 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 32 316 B 32 316 14820 0.05 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0930 9.5180 53.0470 REMARK 3 T TENSOR REMARK 3 T11: 0.7669 T22: 0.5510 REMARK 3 T33: 0.6012 T12: 0.0673 REMARK 3 T13: 0.2126 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 7.2907 L22: 6.4747 REMARK 3 L33: 0.8212 L12: -0.6988 REMARK 3 L13: 1.1382 L23: -1.9545 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: -0.0561 S13: -0.5269 REMARK 3 S21: -0.1832 S22: -0.4305 S23: -1.7000 REMARK 3 S31: 0.0489 S32: 0.3569 S33: 0.3782 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2650 11.0740 39.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.4662 T22: 0.0639 REMARK 3 T33: 0.1491 T12: 0.0087 REMARK 3 T13: 0.2329 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 2.0970 L22: 2.8066 REMARK 3 L33: 3.5116 L12: 0.8059 REMARK 3 L13: -0.9615 L23: -1.6079 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 0.3645 S13: 0.2332 REMARK 3 S21: -0.2438 S22: 0.1152 S23: 0.0165 REMARK 3 S31: -0.0336 S32: -0.1558 S33: -0.0824 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 112 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4920 38.0280 20.0180 REMARK 3 T TENSOR REMARK 3 T11: 0.7156 T22: 0.7246 REMARK 3 T33: 0.4467 T12: 0.0996 REMARK 3 T13: 0.0244 T23: -0.0805 REMARK 3 L TENSOR REMARK 3 L11: 2.5705 L22: 8.9675 REMARK 3 L33: 7.2396 L12: 4.2636 REMARK 3 L13: 1.4416 L23: 0.0509 REMARK 3 S TENSOR REMARK 3 S11: 0.4972 S12: -0.5835 S13: -0.3166 REMARK 3 S21: 1.5981 S22: -0.6601 S23: -0.9777 REMARK 3 S31: -0.4145 S32: 0.6212 S33: 0.1629 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 113 B 317 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8530 35.8760 8.8650 REMARK 3 T TENSOR REMARK 3 T11: 0.4355 T22: 0.1125 REMARK 3 T33: 0.1512 T12: -0.0342 REMARK 3 T13: 0.2271 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.0427 L22: 3.4038 REMARK 3 L33: 3.5407 L12: 1.1124 REMARK 3 L13: -1.0294 L23: -1.6262 REMARK 3 S TENSOR REMARK 3 S11: -0.1115 S12: 0.0069 S13: -0.0522 REMARK 3 S21: -0.0860 S22: 0.2346 S23: 0.2098 REMARK 3 S31: 0.2575 S32: -0.4365 S33: -0.1231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OWQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006491. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 57.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: STK10 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM FORMATE, 15%(W/V) PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.20000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 16 REMARK 465 MET A 17 REMARK 465 ARG A 18 REMARK 465 LYS A 19 REMARK 465 SER A 20 REMARK 465 ARG A 21 REMARK 465 GLU A 22 REMARK 465 TYR A 23 REMARK 465 GLU A 24 REMARK 465 HIS A 25 REMARK 465 VAL A 26 REMARK 465 ARG A 27 REMARK 465 ARG A 28 REMARK 465 ASP A 29 REMARK 465 THR A 69 REMARK 465 LYS A 70 REMARK 465 SER A 71 REMARK 465 TYR A 101 REMARK 465 HIS A 102 REMARK 465 ASP A 103 REMARK 465 GLY A 104 REMARK 465 PHE A 176 REMARK 465 GLY A 177 REMARK 465 VAL A 178 REMARK 465 SER A 179 REMARK 465 ALA A 180 REMARK 465 LYS A 181 REMARK 465 ASN A 182 REMARK 465 LEU A 183 REMARK 465 LYS A 184 REMARK 465 THR A 185 REMARK 465 LEU A 186 REMARK 465 GLN A 187 REMARK 465 LYS A 188 REMARK 465 ARG A 189 REMARK 465 ASP A 190 REMARK 465 SER A 191 REMARK 465 PHE A 192 REMARK 465 ILE A 193 REMARK 465 GLY A 194 REMARK 465 THR A 195 REMARK 465 THR A 208 REMARK 465 MET A 209 REMARK 465 LYS A 210 REMARK 465 ASP A 211 REMARK 465 THR A 212 REMARK 465 PRO A 213 REMARK 465 SER B 16 REMARK 465 MET B 17 REMARK 465 ARG B 18 REMARK 465 LYS B 19 REMARK 465 SER B 20 REMARK 465 ARG B 21 REMARK 465 GLU B 22 REMARK 465 TYR B 23 REMARK 465 GLU B 24 REMARK 465 HIS B 25 REMARK 465 VAL B 26 REMARK 465 ARG B 27 REMARK 465 ARG B 28 REMARK 465 ASP B 29 REMARK 465 LEU B 30 REMARK 465 ASP B 31 REMARK 465 THR B 69 REMARK 465 LYS B 70 REMARK 465 SER B 71 REMARK 465 TYR B 101 REMARK 465 HIS B 102 REMARK 465 ASP B 103 REMARK 465 GLY B 104 REMARK 465 PHE B 176 REMARK 465 GLY B 177 REMARK 465 VAL B 178 REMARK 465 SER B 179 REMARK 465 ALA B 180 REMARK 465 LYS B 181 REMARK 465 ASN B 182 REMARK 465 LEU B 183 REMARK 465 LYS B 184 REMARK 465 THR B 185 REMARK 465 LEU B 186 REMARK 465 GLN B 187 REMARK 465 LYS B 188 REMARK 465 ARG B 189 REMARK 465 ASP B 190 REMARK 465 SER B 191 REMARK 465 PHE B 192 REMARK 465 ILE B 193 REMARK 465 GLY B 194 REMARK 465 THR B 195 REMARK 465 LYS B 210 REMARK 465 ASP B 211 REMARK 465 THR B 212 REMARK 465 PRO B 213 REMARK 465 TYR B 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 30 CG CD1 CD2 REMARK 470 ASP A 31 CG OD1 OD2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 VAL A 35 CG1 CG2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 VAL A 39 CG1 CG2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 54 CD CE NZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 65 CD CE NZ REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 ILE A 79 CD1 REMARK 470 ILE A 82 CD1 REMARK 470 LYS A 95 CD CE NZ REMARK 470 TYR A 100 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 LYS A 151 CE NZ REMARK 470 ARG A 152 CD NE CZ NH1 NH2 REMARK 470 ILE A 154 CD1 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 MET A 205 CE REMARK 470 TYR A 214 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 243 CG SD CE REMARK 470 LEU A 247 CD1 CD2 REMARK 470 LYS A 248 NZ REMARK 470 LYS A 251 CD CE NZ REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 ARG A 304 NE CZ NH1 NH2 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 VAL B 35 CG1 CG2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 VAL B 39 CG1 CG2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 LYS B 54 CD CE NZ REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 GLU B 72 CG CD OE1 OE2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 ILE B 79 CD1 REMARK 470 ILE B 82 CD1 REMARK 470 GLU B 83 CG CD OE1 OE2 REMARK 470 LYS B 95 CD CE NZ REMARK 470 LYS B 105 CG CD CE NZ REMARK 470 ARG B 152 CD NE CZ NH1 NH2 REMARK 470 ILE B 154 CD1 REMARK 470 MET B 205 CE REMARK 470 MET B 209 CG SD CE REMARK 470 MET B 243 CG SD CE REMARK 470 LEU B 247 CD1 CD2 REMARK 470 LYS B 248 NZ REMARK 470 LYS B 251 CD CE NZ REMARK 470 LYS B 272 CE NZ REMARK 470 GLU B 280 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 131 OG SER B 264 2.15 REMARK 500 OE1 GLU A 131 OG SER A 264 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD ARG A 304 O GLU A 317 2556 2.12 REMARK 500 OG SER A 299 OE1 GLU A 317 2556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 33 -35.87 92.48 REMARK 500 VAL A 39 44.67 -146.07 REMARK 500 PRO A 91 -55.95 -26.60 REMARK 500 ASP A 157 41.70 -148.25 REMARK 500 ILE A 233 -49.68 70.51 REMARK 500 LEU A 275 69.32 -101.47 REMARK 500 GLU A 280 -71.96 -63.79 REMARK 500 ASN B 33 -25.10 90.38 REMARK 500 VAL B 39 46.41 -148.00 REMARK 500 ASP B 44 99.49 -69.83 REMARK 500 GLU B 73 46.16 -77.00 REMARK 500 PRO B 91 -56.04 -26.82 REMARK 500 ASP B 157 42.81 -148.10 REMARK 500 THR B 208 100.51 -48.28 REMARK 500 ILE B 233 -49.89 68.40 REMARK 500 LEU B 275 68.50 -100.55 REMARK 500 GLU B 280 -72.04 -62.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 316 GLU B 317 148.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 38O A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 38O B 600 DBREF 5OWQ A 18 317 UNP O94804 STK10_HUMAN 18 317 DBREF 5OWQ B 18 317 UNP O94804 STK10_HUMAN 18 317 SEQADV 5OWQ SER A 16 UNP O94804 EXPRESSION TAG SEQADV 5OWQ MET A 17 UNP O94804 EXPRESSION TAG SEQADV 5OWQ SER B 16 UNP O94804 EXPRESSION TAG SEQADV 5OWQ MET B 17 UNP O94804 EXPRESSION TAG SEQRES 1 A 302 SER MET ARG LYS SER ARG GLU TYR GLU HIS VAL ARG ARG SEQRES 2 A 302 ASP LEU ASP PRO ASN GLU VAL TRP GLU ILE VAL GLY GLU SEQRES 3 A 302 LEU GLY ASP GLY ALA PHE GLY LYS VAL TYR LYS ALA LYS SEQRES 4 A 302 ASN LYS GLU THR GLY ALA LEU ALA ALA ALA LYS VAL ILE SEQRES 5 A 302 GLU THR LYS SER GLU GLU GLU LEU GLU ASP TYR ILE VAL SEQRES 6 A 302 GLU ILE GLU ILE LEU ALA THR CYS ASP HIS PRO TYR ILE SEQRES 7 A 302 VAL LYS LEU LEU GLY ALA TYR TYR HIS ASP GLY LYS LEU SEQRES 8 A 302 TRP ILE MET ILE GLU PHE CYS PRO GLY GLY ALA VAL ASP SEQRES 9 A 302 ALA ILE MET LEU GLU LEU ASP ARG GLY LEU THR GLU PRO SEQRES 10 A 302 GLN ILE GLN VAL VAL CYS ARG GLN MET LEU GLU ALA LEU SEQRES 11 A 302 ASN PHE LEU HIS SER LYS ARG ILE ILE HIS ARG ASP LEU SEQRES 12 A 302 LYS ALA GLY ASN VAL LEU MET THR LEU GLU GLY ASP ILE SEQRES 13 A 302 ARG LEU ALA ASP PHE GLY VAL SER ALA LYS ASN LEU LYS SEQRES 14 A 302 THR LEU GLN LYS ARG ASP SER PHE ILE GLY THR PRO TYR SEQRES 15 A 302 TRP MET ALA PRO GLU VAL VAL MET CYS GLU THR MET LYS SEQRES 16 A 302 ASP THR PRO TYR ASP TYR LYS ALA ASP ILE TRP SER LEU SEQRES 17 A 302 GLY ILE THR LEU ILE GLU MET ALA GLN ILE GLU PRO PRO SEQRES 18 A 302 HIS HIS GLU LEU ASN PRO MET ARG VAL LEU LEU LYS ILE SEQRES 19 A 302 ALA LYS SER ASP PRO PRO THR LEU LEU THR PRO SER LYS SEQRES 20 A 302 TRP SER VAL GLU PHE ARG ASP PHE LEU LYS ILE ALA LEU SEQRES 21 A 302 ASP LYS ASN PRO GLU THR ARG PRO SER ALA ALA GLN LEU SEQRES 22 A 302 LEU GLU HIS PRO PHE VAL SER SER ILE THR SER ASN LYS SEQRES 23 A 302 ALA LEU ARG GLU LEU VAL ALA GLU ALA LYS ALA GLU VAL SEQRES 24 A 302 MET GLU GLU SEQRES 1 B 302 SER MET ARG LYS SER ARG GLU TYR GLU HIS VAL ARG ARG SEQRES 2 B 302 ASP LEU ASP PRO ASN GLU VAL TRP GLU ILE VAL GLY GLU SEQRES 3 B 302 LEU GLY ASP GLY ALA PHE GLY LYS VAL TYR LYS ALA LYS SEQRES 4 B 302 ASN LYS GLU THR GLY ALA LEU ALA ALA ALA LYS VAL ILE SEQRES 5 B 302 GLU THR LYS SER GLU GLU GLU LEU GLU ASP TYR ILE VAL SEQRES 6 B 302 GLU ILE GLU ILE LEU ALA THR CYS ASP HIS PRO TYR ILE SEQRES 7 B 302 VAL LYS LEU LEU GLY ALA TYR TYR HIS ASP GLY LYS LEU SEQRES 8 B 302 TRP ILE MET ILE GLU PHE CYS PRO GLY GLY ALA VAL ASP SEQRES 9 B 302 ALA ILE MET LEU GLU LEU ASP ARG GLY LEU THR GLU PRO SEQRES 10 B 302 GLN ILE GLN VAL VAL CYS ARG GLN MET LEU GLU ALA LEU SEQRES 11 B 302 ASN PHE LEU HIS SER LYS ARG ILE ILE HIS ARG ASP LEU SEQRES 12 B 302 LYS ALA GLY ASN VAL LEU MET THR LEU GLU GLY ASP ILE SEQRES 13 B 302 ARG LEU ALA ASP PHE GLY VAL SER ALA LYS ASN LEU LYS SEQRES 14 B 302 THR LEU GLN LYS ARG ASP SER PHE ILE GLY THR PRO TYR SEQRES 15 B 302 TRP MET ALA PRO GLU VAL VAL MET CYS GLU THR MET LYS SEQRES 16 B 302 ASP THR PRO TYR ASP TYR LYS ALA ASP ILE TRP SER LEU SEQRES 17 B 302 GLY ILE THR LEU ILE GLU MET ALA GLN ILE GLU PRO PRO SEQRES 18 B 302 HIS HIS GLU LEU ASN PRO MET ARG VAL LEU LEU LYS ILE SEQRES 19 B 302 ALA LYS SER ASP PRO PRO THR LEU LEU THR PRO SER LYS SEQRES 20 B 302 TRP SER VAL GLU PHE ARG ASP PHE LEU LYS ILE ALA LEU SEQRES 21 B 302 ASP LYS ASN PRO GLU THR ARG PRO SER ALA ALA GLN LEU SEQRES 22 B 302 LEU GLU HIS PRO PHE VAL SER SER ILE THR SER ASN LYS SEQRES 23 B 302 ALA LEU ARG GLU LEU VAL ALA GLU ALA LYS ALA GLU VAL SEQRES 24 B 302 MET GLU GLU HET 38O A 600 29 HET 38O B 600 29 HETNAM 38O 4-AMINO-5-FLUORO-3-[5-(4-METHYLPIPERAZIN-1-YL)-1H- HETNAM 2 38O BENZIMIDAZOL-2-YL]QUINOLIN-2(1H)-ONE HETSYN 38O DOVITINIB FORMUL 3 38O 2(C21 H21 F N6 O) HELIX 1 AA1 GLU A 73 CYS A 88 1 16 HELIX 2 AA2 VAL A 118 LEU A 125 1 8 HELIX 3 AA3 THR A 130 LYS A 151 1 22 HELIX 4 AA4 LYS A 159 GLY A 161 5 3 HELIX 5 AA5 ALA A 200 CYS A 206 1 7 HELIX 6 AA6 LYS A 217 ILE A 233 1 17 HELIX 7 AA7 ASN A 241 SER A 252 1 12 HELIX 8 AA8 SER A 264 LEU A 275 1 12 HELIX 9 AA9 SER A 284 GLU A 290 1 7 HELIX 10 AB1 HIS A 291 SER A 296 1 6 HELIX 11 AB2 ASN A 300 MET A 315 1 16 HELIX 12 AB3 GLU B 73 CYS B 88 1 16 HELIX 13 AB4 VAL B 118 LEU B 125 1 8 HELIX 14 AB5 THR B 130 LYS B 151 1 22 HELIX 15 AB6 LYS B 159 GLY B 161 5 3 HELIX 16 AB7 ALA B 200 CYS B 206 1 7 HELIX 17 AB8 LYS B 217 ILE B 233 1 17 HELIX 18 AB9 ASN B 241 SER B 252 1 12 HELIX 19 AC1 SER B 264 LEU B 275 1 12 HELIX 20 AC2 SER B 284 GLU B 290 1 7 HELIX 21 AC3 HIS B 291 SER B 296 1 6 HELIX 22 AC4 ASN B 300 MET B 315 1 16 SHEET 1 AA1 5 TRP A 36 GLY A 43 0 SHEET 2 AA1 5 LYS A 49 ASN A 55 -1 O LYS A 52 N VAL A 39 SHEET 3 AA1 5 LEU A 61 ILE A 67 -1 O ALA A 64 N TYR A 51 SHEET 4 AA1 5 LEU A 106 ILE A 110 -1 O ILE A 110 N ALA A 63 SHEET 5 AA1 5 LEU A 96 TYR A 100 -1 N LEU A 97 O MET A 109 SHEET 1 AA2 3 GLY A 116 ALA A 117 0 SHEET 2 AA2 3 VAL A 163 MET A 165 -1 O MET A 165 N GLY A 116 SHEET 3 AA2 3 ILE A 171 LEU A 173 -1 O ARG A 172 N LEU A 164 SHEET 1 AA3 5 TRP B 36 GLY B 43 0 SHEET 2 AA3 5 LYS B 49 ASN B 55 -1 O LYS B 52 N VAL B 39 SHEET 3 AA3 5 LEU B 61 ILE B 67 -1 O ALA B 64 N TYR B 51 SHEET 4 AA3 5 LEU B 106 ILE B 110 -1 O ILE B 110 N ALA B 63 SHEET 5 AA3 5 LEU B 96 TYR B 100 -1 N LEU B 97 O MET B 109 SHEET 1 AA4 3 GLY B 116 ALA B 117 0 SHEET 2 AA4 3 VAL B 163 MET B 165 -1 O MET B 165 N GLY B 116 SHEET 3 AA4 3 ILE B 171 LEU B 173 -1 O ARG B 172 N LEU B 164 SSBOND 1 CYS A 206 CYS B 206 1555 1555 2.06 SITE 1 AC1 8 LEU A 42 ALA A 63 ILE A 110 GLU A 111 SITE 2 AC1 8 PHE A 112 CYS A 113 GLY A 116 LEU A 164 SITE 1 AC2 9 ALA B 63 ILE B 110 GLU B 111 PHE B 112 SITE 2 AC2 9 CYS B 113 GLY B 116 LEU B 164 ASP B 175 SITE 3 AC2 9 VAL B 314 CRYST1 57.570 50.400 114.570 90.00 96.60 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017370 0.000000 0.002010 0.00000 SCALE2 0.000000 0.019841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008787 0.00000