HEADER TRANSFERASE 04-SEP-17 5OWT TITLE CRYSTAL STRUCTURE OF TNKS2 IN COMPLEX WITH (5S)-5-METHYL-5-[4-(4-OXO- TITLE 2 3,4-DIHYDROQUINAZOLIN-2-YL)PHENYL]IMIDAZOLIDINE-2,4-DIONE CAVEAT 5OWT F37 A 1203 HAS WRONG CHIRALITY AT ATOM C1 F37 B 1203 HAS CAVEAT 2 5OWT WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TANKYRASE-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TANK2,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 6,ARTD6, COMPND 5 POLY [ADP-RIBOSE] POLYMERASE 5B,TNKS-2,TRF1-INTERACTING ANKYRIN- COMPND 6 RELATED ADP-RIBOSE POLYMERASE 2,TANKYRASE II,TANKYRASE-LIKE PROTEIN, COMPND 7 TANKYRASE-RELATED PROTEIN; COMPND 8 EC: 2.4.2.30; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNKS2, PARP5B, TANK2, TNKL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TANKYRASE, INHIBITOR, ARTD6, PARP5B, ADP-RIBOSYLTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NKIZINKIKO,T.HAIKARAINEN,L.LEHTIO REVDAT 3 17-JAN-24 5OWT 1 REMARK REVDAT 2 16-OCT-19 5OWT 1 REMARK REVDAT 1 02-MAY-18 5OWT 0 JRNL AUTH Y.NKIZINKIKO,J.DESANTIS,J.KOIVUNEN,T.HAIKARAINEN,S.MURTHY, JRNL AUTH 2 L.SANCINETO,S.MASSARI,F.IANNI,E.OBAJI,M.I.LOZA, JRNL AUTH 3 T.PIHLAJANIEMI,J.BREA,O.TABARRINI,L.LEHTIO JRNL TITL 2-PHENYLQUINAZOLINONES AS DUAL-ACTIVITY TANKYRASE-KINASE JRNL TITL 2 INHIBITORS. JRNL REF SCI REP V. 8 1680 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29374194 JRNL DOI 10.1038/S41598-018-19872-3 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1277 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1749 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3302 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : -2.28000 REMARK 3 B33 (A**2) : 3.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.248 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.866 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3467 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3163 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4679 ; 1.716 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7254 ; 0.788 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 411 ; 6.810 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;34.493 ;22.905 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 569 ;15.130 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.205 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 465 ; 0.277 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3969 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 909 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1644 ; 3.265 ; 4.268 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1643 ; 3.260 ; 4.266 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2049 ; 4.935 ; 6.383 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2050 ; 4.934 ; 6.385 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1823 ; 3.856 ; 4.619 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1824 ; 3.855 ; 4.618 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2628 ; 5.797 ; 6.796 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 14831 ; 9.249 ;40.312 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 14780 ; 9.246 ;40.312 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OWT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006494. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979490 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25529 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3U9H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LISO4, 0.1 M TRIS HCL, 22% REMARK 280 PEG3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.69000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.69000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.11500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.11500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.69000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.50000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.11500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.69000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.50000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.11500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1359 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1339 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 923 REMARK 465 HIS A 924 REMARK 465 HIS A 925 REMARK 465 HIS A 926 REMARK 465 HIS A 927 REMARK 465 HIS A 928 REMARK 465 HIS A 929 REMARK 465 SER A 930 REMARK 465 SER A 931 REMARK 465 GLY A 932 REMARK 465 VAL A 933 REMARK 465 ASP A 934 REMARK 465 LEU A 935 REMARK 465 GLY A 936 REMARK 465 THR A 937 REMARK 465 GLU A 938 REMARK 465 ASN A 939 REMARK 465 LEU A 940 REMARK 465 TYR A 941 REMARK 465 PHE A 942 REMARK 465 GLN A 943 REMARK 465 SER A 944 REMARK 465 MET A 945 REMARK 465 LEU A 946 REMARK 465 ASN A 947 REMARK 465 THR A 948 REMARK 465 SER A 949 REMARK 465 GLY A 950 REMARK 465 SER A 951 REMARK 465 MET A 1113 REMARK 465 LYS A 1114 REMARK 465 MET A 1115 REMARK 465 ALA A 1116 REMARK 465 HIS A 1117 REMARK 465 SER A 1118 REMARK 465 PRO A 1119 REMARK 465 GLY A 1162 REMARK 465 MET B 923 REMARK 465 HIS B 924 REMARK 465 HIS B 925 REMARK 465 HIS B 926 REMARK 465 HIS B 927 REMARK 465 HIS B 928 REMARK 465 HIS B 929 REMARK 465 SER B 930 REMARK 465 SER B 931 REMARK 465 GLY B 932 REMARK 465 VAL B 933 REMARK 465 ASP B 934 REMARK 465 LEU B 935 REMARK 465 GLY B 936 REMARK 465 THR B 937 REMARK 465 GLU B 938 REMARK 465 ASN B 939 REMARK 465 LEU B 940 REMARK 465 TYR B 941 REMARK 465 PHE B 942 REMARK 465 GLN B 943 REMARK 465 SER B 944 REMARK 465 MET B 945 REMARK 465 LEU B 946 REMARK 465 ASN B 947 REMARK 465 THR B 948 REMARK 465 SER B 949 REMARK 465 GLY B 950 REMARK 465 SER B 951 REMARK 465 LYS B 1114 REMARK 465 MET B 1115 REMARK 465 GLY B 1162 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 980 OD1 ASN B 1037 2.15 REMARK 500 OE1 GLU A 970 O HOH A 1301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1325 O HOH A 1325 3455 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1020 56.52 -148.91 REMARK 500 HIS A1021 54.76 36.67 REMARK 500 SER A1130 -73.15 -132.44 REMARK 500 ASN A1132 64.89 68.55 REMARK 500 ASN B1002 97.96 -161.54 REMARK 500 PRO B1120 97.70 -61.46 REMARK 500 VAL B1131 -73.33 -79.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1081 SG REMARK 620 2 HIS A1084 ND1 107.3 REMARK 620 3 CYS A1089 SG 113.2 91.0 REMARK 620 4 CYS A1092 SG 117.8 109.6 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1081 SG REMARK 620 2 HIS B1084 ND1 96.3 REMARK 620 3 CYS B1089 SG 103.2 113.1 REMARK 620 4 CYS B1092 SG 120.5 102.1 119.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F37 A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F37 B 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1204 DBREF 5OWT A 946 1162 UNP Q9H2K2 TNKS2_HUMAN 946 1162 DBREF 5OWT B 946 1162 UNP Q9H2K2 TNKS2_HUMAN 946 1162 SEQADV 5OWT MET A 923 UNP Q9H2K2 INITIATING METHIONINE SEQADV 5OWT HIS A 924 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT HIS A 925 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT HIS A 926 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT HIS A 927 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT HIS A 928 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT HIS A 929 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT SER A 930 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT SER A 931 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT GLY A 932 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT VAL A 933 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT ASP A 934 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT LEU A 935 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT GLY A 936 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT THR A 937 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT GLU A 938 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT ASN A 939 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT LEU A 940 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT TYR A 941 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT PHE A 942 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT GLN A 943 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT SER A 944 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT MET A 945 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT MET B 923 UNP Q9H2K2 INITIATING METHIONINE SEQADV 5OWT HIS B 924 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT HIS B 925 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT HIS B 926 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT HIS B 927 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT HIS B 928 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT HIS B 929 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT SER B 930 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT SER B 931 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT GLY B 932 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT VAL B 933 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT ASP B 934 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT LEU B 935 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT GLY B 936 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT THR B 937 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT GLU B 938 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT ASN B 939 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT LEU B 940 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT TYR B 941 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT PHE B 942 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT GLN B 943 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT SER B 944 UNP Q9H2K2 EXPRESSION TAG SEQADV 5OWT MET B 945 UNP Q9H2K2 EXPRESSION TAG SEQRES 1 A 240 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 240 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU ASN THR SEQRES 3 A 240 SER GLY SER GLY THR ILE LEU ILE ASP LEU SER PRO ASP SEQRES 4 A 240 ASP LYS GLU PHE GLN SER VAL GLU GLU GLU MET GLN SER SEQRES 5 A 240 THR VAL ARG GLU HIS ARG ASP GLY GLY HIS ALA GLY GLY SEQRES 6 A 240 ILE PHE ASN ARG TYR ASN ILE LEU LYS ILE GLN LYS VAL SEQRES 7 A 240 CYS ASN LYS LYS LEU TRP GLU ARG TYR THR HIS ARG ARG SEQRES 8 A 240 LYS GLU VAL SER GLU GLU ASN HIS ASN HIS ALA ASN GLU SEQRES 9 A 240 ARG MET LEU PHE HIS GLY SER PRO PHE VAL ASN ALA ILE SEQRES 10 A 240 ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY SEQRES 11 A 240 GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER SEQRES 12 A 240 SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY SEQRES 13 A 240 THR GLY CYS PRO VAL HIS LYS ASP ARG SER CYS TYR ILE SEQRES 14 A 240 CYS HIS ARG GLN LEU LEU PHE CYS ARG VAL THR LEU GLY SEQRES 15 A 240 LYS SER PHE LEU GLN PHE SER ALA MET LYS MET ALA HIS SEQRES 16 A 240 SER PRO PRO GLY HIS HIS SER VAL THR GLY ARG PRO SER SEQRES 17 A 240 VAL ASN GLY LEU ALA LEU ALA GLU TYR VAL ILE TYR ARG SEQRES 18 A 240 GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN SEQRES 19 A 240 ILE MET ARG PRO GLU GLY SEQRES 1 B 240 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 240 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU ASN THR SEQRES 3 B 240 SER GLY SER GLY THR ILE LEU ILE ASP LEU SER PRO ASP SEQRES 4 B 240 ASP LYS GLU PHE GLN SER VAL GLU GLU GLU MET GLN SER SEQRES 5 B 240 THR VAL ARG GLU HIS ARG ASP GLY GLY HIS ALA GLY GLY SEQRES 6 B 240 ILE PHE ASN ARG TYR ASN ILE LEU LYS ILE GLN LYS VAL SEQRES 7 B 240 CYS ASN LYS LYS LEU TRP GLU ARG TYR THR HIS ARG ARG SEQRES 8 B 240 LYS GLU VAL SER GLU GLU ASN HIS ASN HIS ALA ASN GLU SEQRES 9 B 240 ARG MET LEU PHE HIS GLY SER PRO PHE VAL ASN ALA ILE SEQRES 10 B 240 ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY SEQRES 11 B 240 GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER SEQRES 12 B 240 SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY SEQRES 13 B 240 THR GLY CYS PRO VAL HIS LYS ASP ARG SER CYS TYR ILE SEQRES 14 B 240 CYS HIS ARG GLN LEU LEU PHE CYS ARG VAL THR LEU GLY SEQRES 15 B 240 LYS SER PHE LEU GLN PHE SER ALA MET LYS MET ALA HIS SEQRES 16 B 240 SER PRO PRO GLY HIS HIS SER VAL THR GLY ARG PRO SER SEQRES 17 B 240 VAL ASN GLY LEU ALA LEU ALA GLU TYR VAL ILE TYR ARG SEQRES 18 B 240 GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN SEQRES 19 B 240 ILE MET ARG PRO GLU GLY HET SO4 A1201 5 HET SO4 A1202 5 HET F37 A1203 25 HET ZN A1204 1 HET SO4 B1201 5 HET SO4 B1202 5 HET F37 B1203 25 HET ZN B1204 1 HETNAM SO4 SULFATE ION HETNAM F37 (5S)-5-METHYL-5-[4-(4-OXIDANYLIDENE-3H-QUINAZOLIN-2- HETNAM 2 F37 YL)PHENYL]IMIDAZOLIDINE-2,4-DIONE HETNAM ZN ZINC ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 F37 2(C18 H14 N4 O3) FORMUL 6 ZN 2(ZN 2+) FORMUL 11 HOH *136(H2 O) HELIX 1 AA1 ASP A 962 THR A 975 1 14 HELIX 2 AA2 ASN A 1002 GLU A 1019 1 18 HELIX 3 AA3 PHE A 1035 GLY A 1043 1 9 HELIX 4 AA4 ASP A 1045 ALA A 1049 5 5 HELIX 5 AA5 ASN A 1064 GLN A 1070 1 7 HELIX 6 AA6 GLY A 1074 GLY A 1078 5 5 HELIX 7 AA7 ARG A 1143 GLU A 1145 5 3 HELIX 8 AA8 ASP B 962 THR B 975 1 14 HELIX 9 AA9 ASN B 1002 GLU B 1019 1 18 HELIX 10 AB1 PHE B 1035 GLY B 1043 1 9 HELIX 11 AB2 ASP B 1045 ALA B 1049 5 5 HELIX 12 AB3 ASN B 1064 GLN B 1070 1 7 HELIX 13 AB4 GLY B 1074 GLY B 1078 5 5 HELIX 14 AB5 ARG B 1143 GLU B 1145 5 3 SHEET 1 AA1 5 ILE A 954 ASP A 957 0 SHEET 2 AA1 5 ARG A 991 CYS A1001 -1 O CYS A1001 N ILE A 954 SHEET 3 AA1 5 ALA A1147 MET A1158 -1 O GLN A1156 N ASN A 993 SHEET 4 AA1 5 ARG A1094 THR A1102 -1 N ARG A1094 O TYR A1155 SHEET 5 AA1 5 GLU A1026 HIS A1031 -1 N LEU A1029 O CYS A1099 SHEET 1 AA2 4 ILE A1059 ALA A1062 0 SHEET 2 AA2 4 GLU A1138 ILE A1141 -1 O TYR A1139 N PHE A1061 SHEET 3 AA2 4 SER A1124 ARG A1128 -1 N GLY A1127 O GLU A1138 SHEET 4 AA2 4 SER A1106 PHE A1110 1 N GLN A1109 O THR A1126 SHEET 1 AA3 5 ILE B 954 ASP B 957 0 SHEET 2 AA3 5 TYR B 992 CYS B1001 -1 O LYS B 999 N ILE B 956 SHEET 3 AA3 5 ALA B1147 ILE B1157 -1 O GLN B1156 N ASN B 993 SHEET 4 AA3 5 ARG B1094 THR B1102 -1 N ARG B1094 O TYR B1155 SHEET 5 AA3 5 GLU B1026 HIS B1031 -1 N LEU B1029 O CYS B1099 SHEET 1 AA4 4 ILE B1059 ALA B1062 0 SHEET 2 AA4 4 GLU B1138 ILE B1141 -1 O TYR B1139 N PHE B1061 SHEET 3 AA4 4 SER B1124 PRO B1129 -1 N GLY B1127 O GLU B1138 SHEET 4 AA4 4 SER B1106 SER B1111 1 N GLN B1109 O THR B1126 LINK SG CYS A1081 ZN ZN A1204 1555 1555 2.27 LINK ND1 HIS A1084 ZN ZN A1204 1555 1555 2.17 LINK SG CYS A1089 ZN ZN A1204 1555 1555 2.44 LINK SG CYS A1092 ZN ZN A1204 1555 1555 2.42 LINK SG CYS B1081 ZN ZN B1204 1555 1555 2.30 LINK ND1 HIS B1084 ZN ZN B1204 1555 1555 2.53 LINK SG CYS B1089 ZN ZN B1204 1555 1555 2.31 LINK SG CYS B1092 ZN ZN B1204 1555 1555 2.31 SITE 1 AC1 6 ARG A 977 HIS A 979 ARG A 980 LYS A1067 SITE 2 AC1 6 GLN A1070 ASN A1132 SITE 1 AC2 5 ASN A 990 ARG A 991 PRO A1160 GLU A1161 SITE 2 AC2 5 HOH A1303 SITE 1 AC3 14 HIS A1031 GLY A1032 PRO A1034 PHE A1035 SITE 2 AC3 14 ARG A1047 HIS A1048 ALA A1049 TYR A1050 SITE 3 AC3 14 TYR A1060 LYS A1067 SER A1068 TYR A1071 SITE 4 AC3 14 GLU A1138 HOH A1339 SITE 1 AC4 4 CYS A1081 HIS A1084 CYS A1089 CYS A1092 SITE 1 AC5 6 ARG B 977 HIS B 979 ARG B 980 LYS B1067 SITE 2 AC5 6 GLN B1070 MET B1113 SITE 1 AC6 6 ASN B 990 ARG B 991 MET B1158 PRO B1160 SITE 2 AC6 6 GLU B1161 HOH B1324 SITE 1 AC7 15 HIS B1031 GLY B1032 SER B1033 PHE B1035 SITE 2 AC7 15 ARG B1047 HIS B1048 ALA B1049 TYR B1050 SITE 3 AC7 15 TYR B1060 LYS B1067 SER B1068 TYR B1071 SITE 4 AC7 15 GLU B1138 HOH B1314 HOH B1328 SITE 1 AC8 4 CYS B1081 HIS B1084 CYS B1089 CYS B1092 CRYST1 89.000 98.230 113.380 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011236 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008820 0.00000