HEADER OXIDOREDUCTASE 06-SEP-17 5OX5 TITLE HIF PROLYL HYDROXYLASE 2 (PHD2/ EGLN1) IN COMPLEX WITH CCT6, A TITLE 2 GSK1278863-RELATED COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 181-426; COMPND 5 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HPH-2,PROLYL COMPND 6 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2,PHD2,SM-20; COMPND 7 EC: 1.14.11.29; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS OXIDOREDUCTASE, NON-HEME DIOXYGENASE, IRON, 2-OXOGLUTARATE, HYPOXIA- KEYWDS 2 INDUCIBLE FACTOR, HIF, HIF PROLYL HYDROXYLASE DOMAIN 2, PHD2, EGLN1, KEYWDS 3 OXYGENASE, HYPOXIA, DNA-BINDING, METAL-BINDING, TRANSCRIPTION, KEYWDS 4 HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, CYTOPLASM, KEYWDS 5 TRANSCRIPTION/EPIGENETIC REGULATION, SIGNALING, DEVELOPMENT, CELL KEYWDS 6 STRUCTURE, BETA-HYDROXYLATION, TRANSCRIPTION ACTIVATOR/INHIBITOR, KEYWDS 7 UBL CONJUGATION, POLYMORPHISM, VITAMIN C, ZINC-FINGER, FAMILIAL KEYWDS 8 ERYTHROCYTOSIS, BREAST CANCER, TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,C.C.THINNES,C.J.SCHOFIELD REVDAT 3 17-JAN-24 5OX5 1 REMARK REVDAT 2 21-FEB-18 5OX5 1 JRNL REVDAT 1 18-OCT-17 5OX5 0 JRNL AUTH T.L.YEH,T.M.LEISSING,M.I.ABBOUD,C.C.THINNES,O.ATASOYLU, JRNL AUTH 2 J.P.HOLT-MARTYN,D.ZHANG,A.TUMBER,K.LIPPL,C.T.LOHANS, JRNL AUTH 3 I.K.H.LEUNG,H.MORCRETTE,I.J.CLIFTON,T.D.W.CLARIDGE, JRNL AUTH 4 A.KAWAMURA,E.FLASHMAN,X.LU,P.J.RATCLIFFE,R.CHOWDHURY, JRNL AUTH 5 C.W.PUGH,C.J.SCHOFIELD JRNL TITL MOLECULAR AND CELLULAR MECHANISMS OF HIF PROLYL HYDROXYLASE JRNL TITL 2 INHIBITORS IN CLINICAL TRIALS. JRNL REF CHEM SCI V. 8 7651 2017 JRNL REFN ISSN 2041-6520 JRNL PMID 29435217 JRNL DOI 10.1039/C7SC02103H REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.CHOWDHURY,J.I.CANDELA-LENA,M.C.CHAN,D.J.GREENALD,K.K.YEOH, REMARK 1 AUTH 2 Y.M.TIAN,M.A.MCDONOUGH,A.TUMBER,N.R.ROSE,A.CONEJO-GARCIA, REMARK 1 AUTH 3 M.DEMETRIADES,S.MATHAVAN,A.KAWAMURA,M.K.LEE,F.VAN EEDEN, REMARK 1 AUTH 4 C.W.PUGH,P.J.RATCLIFFE,C.J.SCHOFIELD REMARK 1 TITL SELECTIVE SMALL MOLECULE PROBES FOR THE HYPOXIA INDUCIBLE REMARK 1 TITL 2 FACTOR (HIF) PROLYL HYDROXYLASES. REMARK 1 REF ACS CHEM. BIOL. V. 8 1488 2013 REMARK 1 REFN ESSN 1554-8937 REMARK 1 PMID 23683440 REMARK 1 DOI 10.1021/CB400088Q REMARK 1 REFERENCE 2 REMARK 1 AUTH M.C.CHAN,O.ATASOYLU,E.HODSON,A.TUMBER,I.K.LEUNG,R.CHOWDHURY, REMARK 1 AUTH 2 V.GOMEZ-PEREZ,M.DEMETRIADES,A.M.RYDZIK,J.HOLT-MARTYN, REMARK 1 AUTH 3 Y.M.TIAN,T.BISHOP,T.D.CLARIDGE,A.KAWAMURA,C.W.PUGH, REMARK 1 AUTH 4 P.J.RATCLIFFE,C.J.SCHOFIELD REMARK 1 TITL POTENT AND SELECTIVE TRIAZOLE-BASED INHIBITORS OF THE REMARK 1 TITL 2 HYPOXIA-INDUCIBLE FACTOR PROLYL-HYDROXYLASES WITH ACTIVITY REMARK 1 TITL 3 IN THE MURINE BRAIN. REMARK 1 REF PLOS ONE V. 10 32004 2015 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 26147748 REMARK 1 DOI 10.1371/JOURNAL.PONE.0132004 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 13160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7057 - 3.8495 1.00 2571 146 0.1486 0.1736 REMARK 3 2 3.8495 - 3.0556 1.00 2502 137 0.1616 0.1843 REMARK 3 3 3.0556 - 2.6694 1.00 2495 126 0.2012 0.2741 REMARK 3 4 2.6694 - 2.4253 1.00 2472 136 0.2329 0.2475 REMARK 3 5 2.4253 - 2.2515 0.98 2475 100 0.2472 0.2812 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.43 REMARK 3 B_SOL : 63.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.95000 REMARK 3 B22 (A**2) : 4.95000 REMARK 3 B33 (A**2) : -9.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1735 REMARK 3 ANGLE : 0.553 2359 REMARK 3 CHIRALITY : 0.045 253 REMARK 3 PLANARITY : 0.003 310 REMARK 3 DIHEDRAL : 15.471 1003 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 90.3643 -90.1800 5.0384 REMARK 3 T TENSOR REMARK 3 T11: 0.5165 T22: 0.3450 REMARK 3 T33: 0.5024 T12: -0.0064 REMARK 3 T13: 0.0446 T23: 0.1348 REMARK 3 L TENSOR REMARK 3 L11: 0.1406 L22: 0.1625 REMARK 3 L33: 0.0491 L12: 0.0601 REMARK 3 L13: 0.0656 L23: -0.0128 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: 0.0336 S13: -0.5586 REMARK 3 S21: 0.0436 S22: -0.0690 S23: 0.1736 REMARK 3 S31: 0.5714 S32: -0.1667 S33: 0.0047 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.0893 -71.1989 15.7005 REMARK 3 T TENSOR REMARK 3 T11: 0.4320 T22: 0.6496 REMARK 3 T33: 0.4073 T12: 0.1057 REMARK 3 T13: 0.1041 T23: 0.0863 REMARK 3 L TENSOR REMARK 3 L11: 0.3425 L22: 0.0302 REMARK 3 L33: 0.2685 L12: 0.0694 REMARK 3 L13: 0.2598 L23: 0.0555 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: -0.8068 S13: 0.2707 REMARK 3 S21: 0.5999 S22: -0.2021 S23: 0.3883 REMARK 3 S31: -0.1614 S32: -0.5941 S33: -0.0219 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.4250 -53.8981 0.8655 REMARK 3 T TENSOR REMARK 3 T11: 0.6387 T22: 0.3585 REMARK 3 T33: 0.5815 T12: -0.0509 REMARK 3 T13: -0.1380 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.5151 L22: 0.0948 REMARK 3 L33: 1.6798 L12: 0.0454 REMARK 3 L13: -1.5850 L23: 0.0795 REMARK 3 S TENSOR REMARK 3 S11: -0.4364 S12: 0.1138 S13: 0.2917 REMARK 3 S21: -0.1386 S22: -0.2879 S23: 0.1436 REMARK 3 S31: -0.5681 S32: -0.1897 S33: -0.3166 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.0163 -65.4398 12.8605 REMARK 3 T TENSOR REMARK 3 T11: 0.4328 T22: 0.5336 REMARK 3 T33: 0.4106 T12: 0.0287 REMARK 3 T13: 0.0233 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.1398 L22: 0.0995 REMARK 3 L33: 0.0808 L12: 0.0915 REMARK 3 L13: -0.1141 L23: 0.0244 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: -0.1381 S13: 0.3767 REMARK 3 S21: 0.1522 S22: 0.0910 S23: 0.4039 REMARK 3 S31: -0.1695 S32: -0.3877 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.2323 -76.5729 6.2140 REMARK 3 T TENSOR REMARK 3 T11: 0.3044 T22: 0.3022 REMARK 3 T33: 0.2992 T12: 0.0465 REMARK 3 T13: -0.0041 T23: 0.0836 REMARK 3 L TENSOR REMARK 3 L11: 1.3616 L22: 0.8833 REMARK 3 L33: 0.6056 L12: 0.1447 REMARK 3 L13: 0.9017 L23: 0.3819 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: 0.0068 S13: 0.0158 REMARK 3 S21: 0.1601 S22: -0.0379 S23: -0.0866 REMARK 3 S31: -0.0394 S32: -0.0031 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.3842 -76.8137 -5.6339 REMARK 3 T TENSOR REMARK 3 T11: 0.2680 T22: 0.4748 REMARK 3 T33: 0.3528 T12: -0.0099 REMARK 3 T13: -0.0399 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 0.3075 L22: 0.9855 REMARK 3 L33: 0.5022 L12: 0.4140 REMARK 3 L13: 0.3241 L23: -0.0408 REMARK 3 S TENSOR REMARK 3 S11: 0.0817 S12: 0.6543 S13: -0.5111 REMARK 3 S21: -0.3058 S22: 0.0012 S23: 0.1485 REMARK 3 S31: 0.1525 S32: -0.2826 S33: -0.0008 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.3367 -75.8929 1.2672 REMARK 3 T TENSOR REMARK 3 T11: 0.2811 T22: 0.3437 REMARK 3 T33: 0.3405 T12: 0.0267 REMARK 3 T13: -0.0042 T23: 0.0678 REMARK 3 L TENSOR REMARK 3 L11: 0.6062 L22: 1.0952 REMARK 3 L33: 0.1945 L12: -0.0264 REMARK 3 L13: 0.9792 L23: 0.2176 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: 0.0735 S13: -0.0460 REMARK 3 S21: -0.0026 S22: 0.0225 S23: -0.0244 REMARK 3 S31: 0.1190 S32: -0.0670 S33: -0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 706E REMARK 200 DATA SCALING SOFTWARE : HKL-2000 706E REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13170 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 47.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.95300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BQX REMARK 200 REMARK 200 REMARK: HEXAGONAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M SODIUM CITRATE TRIBASIC REMARK 280 DEHYDRATE PH 6.5, SITTING DROP (300 NL), PROTEIN-TO-WELL RATIO, REMARK 280 1:1., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.68400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.68400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.68400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 465 THR A 185 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 LEU A 404 REMARK 465 THR A 405 REMARK 465 GLY A 406 REMARK 465 GLU A 407 REMARK 465 LYS A 408 REMARK 465 GLY A 409 REMARK 465 ASN A 415 REMARK 465 LYS A 416 REMARK 465 PRO A 417 REMARK 465 SER A 418 REMARK 465 ASP A 419 REMARK 465 SER A 420 REMARK 465 VAL A 421 REMARK 465 GLY A 422 REMARK 465 LYS A 423 REMARK 465 ASP A 424 REMARK 465 VAL A 425 REMARK 465 PHE A 426 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 188 CG CD1 CD2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS A 234 CD CE NZ REMARK 470 SER A 242 OG REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 SER A 245 OG REMARK 470 SER A 247 OG REMARK 470 SER A 248 OG REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 ASP A 250 CG OD1 OD2 REMARK 470 ARG A 281 NE CZ NH1 NH2 REMARK 470 LYS A 286 CD CE NZ REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 LYS A 332 CE NZ REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 LYS A 350 CE NZ REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 ARG A 370 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 VAL A 410 CG1 CG2 REMARK 470 ARG A 411 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 413 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 623 O HOH A 655 2.08 REMARK 500 O HOH A 668 O HOH A 675 2.11 REMARK 500 O HOH A 616 O HOH A 654 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -55.15 -123.24 REMARK 500 ASN A 306 35.46 -96.82 REMARK 500 PHE A 346 75.85 -119.30 REMARK 500 GLN A 352 160.65 177.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD1 91.6 REMARK 620 3 HIS A 374 NE2 89.3 92.9 REMARK 620 4 B2E A 502 OAN 100.1 166.9 93.2 REMARK 620 5 B2E A 502 O6 84.6 95.2 170.0 80.1 REMARK 620 6 HOH A 608 O 172.8 84.8 97.1 82.9 89.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B2E A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 503 DBREF 5OX5 A 181 426 UNP Q9GZT9 EGLN1_HUMAN 181 426 SEQADV 5OX5 GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 5OX5 SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 5OX5 HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 5OX5 MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 5OX5 ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 5OX5 SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQRES 1 A 252 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO SEQRES 2 A 252 LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 252 CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 252 LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 252 ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN SEQRES 6 A 252 LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG SEQRES 7 A 252 GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY SEQRES 8 A 252 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 252 LEU ILE ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS SEQRES 10 A 252 ILE ASN GLY ARG THR LYS ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 252 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO SEQRES 12 A 252 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 252 ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU SEQRES 14 A 252 ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE SEQRES 15 A 252 GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 252 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 252 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 252 ARG ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU LYS SEQRES 19 A 252 GLY VAL ARG VAL GLU LEU ASN LYS PRO SER ASP SER VAL SEQRES 20 A 252 GLY LYS ASP VAL PHE HET MN A 501 1 HET B2E A 502 28 HET BCT A 503 5 HETNAM MN MANGANESE (II) ION HETNAM B2E (6-HYDROXY-1,3-DIMETHYL-2,4-DIOXO-1,2,3,4- HETNAM 2 B2E TETRAHYDROPYRIMIDINE-5-CARBONYL)GLYCINE HETNAM BCT BICARBONATE ION FORMUL 2 MN MN 2+ FORMUL 3 B2E C9 H11 N3 O6 FORMUL 4 BCT C H O3 1- FORMUL 5 HOH *85(H2 O) HELIX 1 AA1 PRO A 189 TYR A 197 1 9 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 THR A 232 1 18 HELIX 4 AA4 ASP A 246 ASP A 250 5 5 HELIX 5 AA5 CYS A 266 ASN A 284 1 19 HELIX 6 AA6 ASP A 335 GLY A 340 1 6 HELIX 7 AA7 ALA A 393 TYR A 403 1 11 SHEET 1 AA1 6 ILE A 207 ASP A 211 0 SHEET 2 AA1 6 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA1 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA1 6 ARG A 383 ASP A 392 -1 O VAL A 388 N CYS A 326 SHEET 5 AA1 6 ALA A 298 TYR A 303 -1 N ALA A 301 O ALA A 385 SHEET 6 AA1 6 LYS A 255 ILE A 259 -1 N THR A 257 O VAL A 300 SHEET 1 AA2 5 ILE A 207 ASP A 211 0 SHEET 2 AA2 5 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA2 5 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA2 5 ARG A 383 ASP A 392 -1 O VAL A 388 N CYS A 326 SHEET 5 AA2 5 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 1 AA3 2 LEU A 240 SER A 242 0 SHEET 2 AA3 2 ILE A 251 ARG A 252 -1 O ILE A 251 N VAL A 241 SHEET 1 AA4 4 THR A 308 HIS A 313 0 SHEET 2 AA4 4 HIS A 374 ALA A 379 -1 O HIS A 374 N HIS A 313 SHEET 3 AA4 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA4 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 LINK NE2 HIS A 313 MN MN A 501 1555 1555 2.22 LINK OD1 ASP A 315 MN MN A 501 1555 1555 2.17 LINK NE2 HIS A 374 MN MN A 501 1555 1555 2.17 LINK MN MN A 501 OAN B2E A 502 1555 1555 2.17 LINK MN MN A 501 O6 B2E A 502 1555 1555 1.90 LINK MN MN A 501 O HOH A 608 1555 1555 2.20 SITE 1 AC1 5 HIS A 313 ASP A 315 HIS A 374 B2E A 502 SITE 2 AC1 5 HOH A 608 SITE 1 AC2 16 ASP A 254 MET A 299 TYR A 303 TYR A 310 SITE 2 AC2 16 HIS A 313 ASP A 315 TYR A 329 LEU A 343 SITE 3 AC2 16 HIS A 374 VAL A 376 ARG A 383 ARG A 398 SITE 4 AC2 16 MN A 501 HOH A 608 HOH A 610 HOH A 622 SITE 1 AC3 2 ARG A 312 PRO A 373 CRYST1 110.147 110.147 39.368 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009079 0.005242 0.000000 0.00000 SCALE2 0.000000 0.010483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025401 0.00000