data_5OXE # _entry.id 5OXE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.318 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5OXE WWPDB D_1200006326 EMDB EMD-3857 # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structure of major capsid protein VP1 of Aeropyrum pernix bacilliform virus 1 APBV1' _pdbx_database_related.db_id EMD-3857 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5OXE _pdbx_database_status.recvd_initial_deposition_date 2017-09-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huiskonen, J.T.' 1 0000-0002-0348-7323 'Ptchelkine, D.' 2 ? 'Phillpps, S.E.V.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first 1436 _citation.page_last 1436 _citation.title 'Unique architecture of thermophilic archaeal virus APBV1 and its genome packaging.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-017-01668-0 _citation.pdbx_database_id_PubMed 29127347 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ptchelkine, D.' 1 ? primary 'Gillum, A.' 2 ? primary 'Mochizuki, T.' 3 ? primary 'Lucas-Staat, S.' 4 ? primary 'Liu, Y.' 5 ? primary 'Krupovic, M.' 6 ? primary 'Phillips, S.E.V.' 7 ? primary 'Prangishvili, D.' 8 ? primary 'Huiskonen, J.T.' 9 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5OXE _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.0 _cell.length_a_esd ? _cell.length_b 1.0 _cell.length_b_esd ? _cell.length_c 1.0 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Major virion protein' _entity.formula_weight 8272.858 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAPKATLVKKFKGLAVGVGALLAAPPIMGLASYAVNGISSYLSITINSTTYDFAPLAQAVMVFGGIGLVAYGLHRILGRG L ; _entity_poly.pdbx_seq_one_letter_code_can ;MAPKATLVKKFKGLAVGVGALLAAPPIMGLASYAVNGISSYLSITINSTTYDFAPLAQAVMVFGGIGLVAYGLHRILGRG L ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 PRO n 1 4 LYS n 1 5 ALA n 1 6 THR n 1 7 LEU n 1 8 VAL n 1 9 LYS n 1 10 LYS n 1 11 PHE n 1 12 LYS n 1 13 GLY n 1 14 LEU n 1 15 ALA n 1 16 VAL n 1 17 GLY n 1 18 VAL n 1 19 GLY n 1 20 ALA n 1 21 LEU n 1 22 LEU n 1 23 ALA n 1 24 ALA n 1 25 PRO n 1 26 PRO n 1 27 ILE n 1 28 MET n 1 29 GLY n 1 30 LEU n 1 31 ALA n 1 32 SER n 1 33 TYR n 1 34 ALA n 1 35 VAL n 1 36 ASN n 1 37 GLY n 1 38 ILE n 1 39 SER n 1 40 SER n 1 41 TYR n 1 42 LEU n 1 43 SER n 1 44 ILE n 1 45 THR n 1 46 ILE n 1 47 ASN n 1 48 SER n 1 49 THR n 1 50 THR n 1 51 TYR n 1 52 ASP n 1 53 PHE n 1 54 ALA n 1 55 PRO n 1 56 LEU n 1 57 ALA n 1 58 GLN n 1 59 ALA n 1 60 VAL n 1 61 MET n 1 62 VAL n 1 63 PHE n 1 64 GLY n 1 65 GLY n 1 66 ILE n 1 67 GLY n 1 68 LEU n 1 69 VAL n 1 70 ALA n 1 71 TYR n 1 72 GLY n 1 73 LEU n 1 74 HIS n 1 75 ARG n 1 76 ILE n 1 77 LEU n 1 78 GLY n 1 79 ARG n 1 80 GLY n 1 81 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 81 _entity_src_nat.common_name 'isolate -/Japan/Tanaka/2005' _entity_src_nat.pdbx_organism_scientific 'Aeropyrum pernix bacilliform virus 1' _entity_src_nat.pdbx_ncbi_taxonomy_id 1289471 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D4QF72_APBV1 _struct_ref.pdbx_db_accession D4QF72 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAPKATLVKKFKGLAVGVGALLAAPPIMGLASYAVNGISSYLSITINSTTYDFAPLAQAVMVFGGIGLVAYGLHRILGRG L ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5OXE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 81 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D4QF72 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 81 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 81 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5OXE _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] 0.95 _refine.aniso_B[1][2] 2.73 _refine.aniso_B[1][3] 0.16 _refine.aniso_B[2][2] -0.70 _refine.aniso_B[2][3] 1.59 _refine.aniso_B[3][3] -0.25 _refine.B_iso_max ? _refine.B_iso_mean 86.033 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.898 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5OXE _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.50 _refine.ls_d_res_low 113.40 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 43610 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.00 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.27071 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.27071 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.328 _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein ? _refine_hist.pdbx_number_atoms_nucleic_acid ? _refine_hist.pdbx_number_atoms_ligand ? _refine_hist.number_atoms_solvent ? _refine_hist.number_atoms_total 3528 _refine_hist.d_res_high . _refine_hist.d_res_low . # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.012 0.019 3598 ? r_bond_refined_d ? ? 'ELECTRON MICROSCOPY' ? 0.000 0.020 3591 ? r_bond_other_d ? ? 'ELECTRON MICROSCOPY' ? 1.984 1.986 4886 ? r_angle_refined_deg ? ? 'ELECTRON MICROSCOPY' ? 3.742 3.000 8232 ? r_angle_other_deg ? ? 'ELECTRON MICROSCOPY' ? 7.011 5.000 483 ? r_dihedral_angle_1_deg ? ? 'ELECTRON MICROSCOPY' ? 31.726 21.429 98 ? r_dihedral_angle_2_deg ? ? 'ELECTRON MICROSCOPY' ? 24.644 15.000 539 ? r_dihedral_angle_3_deg ? ? 'ELECTRON MICROSCOPY' ? 15.731 15.000 14 ? r_dihedral_angle_4_deg ? ? 'ELECTRON MICROSCOPY' ? 0.123 0.200 588 ? r_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.007 0.021 3997 ? r_gen_planes_refined ? ? 'ELECTRON MICROSCOPY' ? 0.006 0.020 749 ? r_gen_planes_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? 8.228 7.857 1953 ? r_mcbond_it ? ? 'ELECTRON MICROSCOPY' ? 8.226 7.846 1952 ? r_mcbond_other ? ? 'ELECTRON MICROSCOPY' ? 13.873 11.709 2429 ? r_mcangle_it ? ? 'ELECTRON MICROSCOPY' ? 13.872 11.721 2430 ? r_mcangle_other ? ? 'ELECTRON MICROSCOPY' ? 11.654 9.396 1645 ? r_scbond_it ? ? 'ELECTRON MICROSCOPY' ? 11.650 9.400 1646 ? r_scbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_scangle_it ? ? 'ELECTRON MICROSCOPY' ? 19.055 13.412 2458 ? r_scangle_other ? ? 'ELECTRON MICROSCOPY' ? 22.829 95.935 4239 ? r_long_range_B_refined ? ? 'ELECTRON MICROSCOPY' ? 22.828 95.939 4240 ? r_long_range_B_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_rigid_bond_restr ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_free ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_ls_shell.d_res_high 3.500 _refine_ls_shell.d_res_low 3.591 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 0 _refine_ls_shell.number_reflns_R_work 3199 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.773 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5OXE _struct.title 'Structure of major capsid protein VP1 of Aeropyrum pernix bacilliform virus 1 APBV1' _struct.pdbx_descriptor 'Major virion protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5OXE _struct_keywords.text 'archaeal virus, thermophile, capsid, helical, VIRUS' _struct_keywords.pdbx_keywords VIRUS # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 10 ? ALA A 23 ? LYS A 10 ALA A 23 1 ? 14 HELX_P HELX_P2 AA2 ALA A 23 ? SER A 40 ? ALA A 23 SER A 40 1 ? 18 HELX_P HELX_P3 AA3 PHE A 53 ? ILE A 76 ? PHE A 53 ILE A 76 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 43 ? THR A 45 ? SER A 43 THR A 45 AA1 2 THR A 50 ? ASP A 52 ? THR A 50 ASP A 52 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 44 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 44 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id TYR _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 51 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id TYR _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 51 # _atom_sites.entry_id 5OXE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 PRO 3 3 ? ? ? A . n A 1 4 LYS 4 4 ? ? ? A . n A 1 5 ALA 5 5 ? ? ? A . n A 1 6 THR 6 6 ? ? ? A . n A 1 7 LEU 7 7 ? ? ? A . n A 1 8 VAL 8 8 ? ? ? A . n A 1 9 LYS 9 9 ? ? ? A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 MET 28 28 28 MET MET A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 HIS 74 74 74 HIS HIS A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 GLY 80 80 ? ? ? A . n A 1 81 LEU 81 81 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 135-meric _pdbx_struct_assembly.oligomeric_count 135 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135 ; _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'point symmetry operation' ? ? 1.000000 0.000000 0.000000 0.00000 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 2 'point symmetry operation' ? ? -0.856718 -0.515786 0.000000 285.75260 0.515786 -0.856718 0.000000 163.61950 0.000000 0.000000 1.000000 -54.90000 3 'point symmetry operation' ? ? -0.674302 -0.738455 0.000000 290.88976 0.738455 -0.674302 0.000000 114.70233 0.000000 0.000000 1.000000 -48.80000 4 'point symmetry operation' ? ? -0.436017 -0.899939 0.000000 281.87994 0.899939 -0.436017 0.000000 66.34839 0.000000 0.000000 1.000000 -42.70000 5 'point symmetry operation' ? ? -0.161604 -0.986856 0.000000 259.46967 0.986856 -0.161604 0.000000 22.56415 0.000000 0.000000 1.000000 -36.60000 6 'point symmetry operation' ? ? 0.126199 -0.992005 0.000000 225.51580 0.992005 0.126199 0.000000 -13.02257 -0.000000 0.000000 1.000000 -30.50000 7 'point symmetry operation' ? ? 0.403545 -0.914960 0.000000 182.83163 0.914960 0.403545 0.000000 -37.46316 -0.000000 0.000000 1.000000 -24.40000 8 'point symmetry operation' ? ? 0.647455 -0.762104 0.000000 134.95386 0.762104 0.647455 0.000000 -48.73254 -0.000000 0.000000 1.000000 -18.30000 9 'point symmetry operation' ? ? 0.837719 -0.546102 0.000000 85.84948 0.546102 0.837719 0.000000 -45.89697 -0.000000 0.000000 1.000000 -12.20000 10 'point symmetry operation' ? ? 0.958572 -0.284852 0.000000 39.58715 0.284852 0.958572 0.000000 -29.19140 -0.000000 0.000000 1.000000 -6.10000 11 'point symmetry operation' ? ? 0.958572 0.284852 0.000000 -29.63188 -0.284852 0.958572 0.000000 39.25852 0.000000 -0.000000 1.000000 6.10000 12 'point symmetry operation' ? ? 0.837719 0.546102 0.000000 -46.85329 -0.546102 0.837719 0.000000 85.33133 0.000000 -0.000000 1.000000 12.20000 13 'point symmetry operation' ? ? 0.647455 0.762104 0.000000 -50.23732 -0.762104 0.647455 0.000000 134.40096 0.000000 -0.000000 1.000000 18.30000 14 'point symmetry operation' ? ? 0.403545 0.914960 0.000000 -39.50357 -0.914960 0.403545 0.000000 182.40165 0.000000 -0.000000 1.000000 24.40000 15 'point symmetry operation' ? ? 0.126199 0.992005 0.000000 -15.54141 -0.992005 0.126199 0.000000 225.35622 0.000000 -0.000000 1.000000 30.50000 16 'point symmetry operation' ? ? -0.161604 0.986856 0.000000 19.66373 -0.986856 -0.161604 0.000000 259.70558 0.000000 0.000000 1.000000 36.60000 17 'point symmetry operation' ? ? -0.436017 0.899939 0.000000 63.19485 -0.899939 -0.436017 0.000000 282.60364 0.000000 0.000000 1.000000 42.70000 18 'point symmetry operation' ? ? -0.674302 0.738455 0.000000 111.44511 -0.738455 -0.674302 0.000000 292.15315 0.000000 0.000000 1.000000 48.80000 19 'point symmetry operation' ? ? -0.856718 0.515786 0.000000 160.41662 -0.515786 -0.856718 0.000000 287.56285 0.000000 0.000000 1.000000 54.90000 20 'point symmetry operation' ? ? -0.968148 0.250380 0.000000 206.05177 -0.250380 -0.968148 0.000000 269.21310 0.000000 0.000000 1.000000 61.00000 21 'point symmetry operation' ? ? -0.999360 -0.035772 0.000000 244.56935 0.035772 -0.999360 0.000000 238.62428 0.000000 0.000000 1.000000 67.10000 22 'point symmetry operation' ? ? -0.947768 -0.318959 0.000000 272.77793 0.318959 -0.947768 0.000000 198.33090 0.000000 0.000000 1.000000 73.20000 23 'point symmetry operation' ? ? -0.817648 -0.575719 0.000000 288.34022 0.575719 -0.817648 0.000000 151.67155 0.000000 0.000000 1.000000 79.30000 24 'point symmetry operation' ? ? -0.619779 -0.784776 0.000000 289.96678 0.784776 -0.619779 0.000000 102.51227 0.000000 0.000000 1.000000 85.40000 25 'point symmetry operation' ? ? -0.370557 -0.928810 0.000000 277.52284 0.928810 -0.370557 0.000000 54.92626 0.000000 0.000000 1.000000 91.50000 26 'point symmetry operation' ? ? -0.090633 -0.995884 0.000000 252.03946 0.995884 -0.090633 0.000000 12.85635 0.000000 0.000000 1.000000 97.60000 27 'point symmetry operation' ? ? 0.196802 -0.980443 0.000000 215.62812 0.980443 0.196802 0.000000 -20.21168 -0.000000 0.000000 1.000000 103.70000 28 'point symmetry operation' ? ? -0.755282 0.655400 0.000000 131.26599 -0.655400 -0.755282 0.000000 292.01307 0.000000 0.000000 1.000000 -54.90000 29 'point symmetry operation' ? ? -0.910684 0.413104 0.000000 179.37645 -0.413104 -0.910684 0.000000 281.78256 0.000000 0.000000 1.000000 -48.80000 30 'point symmetry operation' ? ? -0.990629 0.136580 0.000000 222.57959 -0.136580 -0.990629 0.000000 258.27153 0.000000 0.000000 1.000000 -42.70000 31 'point symmetry operation' ? ? -0.988494 -0.151261 0.000000 257.29573 0.151261 -0.988494 0.000000 223.42802 0.000000 0.000000 1.000000 -36.60000 32 'point symmetry operation' ? ? -0.904455 -0.426569 0.000000 280.64839 0.426569 -0.904455 0.000000 180.13907 0.000000 0.000000 1.000000 -30.50000 33 'point symmetry operation' ? ? -0.745476 -0.666532 0.000000 290.70264 0.666532 -0.745476 0.000000 131.99146 0.000000 0.000000 1.000000 -24.40000 34 'point symmetry operation' ? ? -0.524729 -0.851269 0.000000 286.62541 0.851269 -0.524729 0.000000 82.97456 0.000000 0.000000 1.000000 -18.30000 35 'point symmetry operation' ? ? -0.260505 -0.965473 0.000000 268.75454 0.965473 -0.260505 0.000000 37.14976 0.000000 0.000000 1.000000 -12.20000 36 'point symmetry operation' ? ? 0.025305 -0.999680 0.000000 238.57075 0.999680 0.025305 0.000000 -1.68603 -0.000000 0.000000 1.000000 -6.10000 37 'point symmetry operation' ? ? 0.309017 -0.951057 0.000000 198.57497 0.951057 0.309017 0.000000 -30.31501 -0.000000 0.000000 1.000000 0.00000 38 'point symmetry operation' ? ? 0.567125 -0.823632 0.000000 152.08114 0.823632 0.567125 0.000000 -46.36505 -0.000000 0.000000 1.000000 6.10000 39 'point symmetry operation' ? ? 0.778243 -0.627963 0.000000 102.94160 0.627963 0.778243 0.000000 -48.50630 -0.000000 0.000000 1.000000 12.20000 40 'point symmetry operation' ? ? 0.924878 -0.380263 0.000000 55.22789 0.380263 0.924878 0.000000 -36.56135 -0.000000 0.000000 1.000000 18.30000 41 'point symmetry operation' ? ? 0.994881 -0.101056 0.000000 12.89342 0.101056 0.994881 0.000000 -11.51992 -0.000000 0.000000 1.000000 24.40000 42 'point symmetry operation' ? ? 0.982450 0.186524 0.000000 -20.55409 -0.186524 0.982450 0.000000 24.54314 0.000000 -0.000000 1.000000 30.50000 43 'point symmetry operation' ? ? 0.888617 0.458650 0.000000 -42.34328 -0.458650 0.888617 0.000000 68.63975 0.000000 -0.000000 1.000000 36.60000 44 'point symmetry operation' ? ? 0.721156 0.692773 0.000000 -50.66878 -0.692773 0.721156 0.000000 117.11620 0.000000 -0.000000 1.000000 42.70000 45 'point symmetry operation' ? ? 0.493942 0.869495 0.000000 -44.84075 -0.869495 0.493942 0.000000 165.95588 0.000000 -0.000000 1.000000 48.80000 46 'point symmetry operation' ? ? 0.225801 0.974173 0.000000 -25.34209 -0.974173 0.225801 0.000000 211.11208 0.000000 -0.000000 1.000000 54.90000 47 'point symmetry operation' ? ? -0.061049 0.998135 0.000000 6.21160 -0.998135 -0.061049 0.000000 248.84329 0.000000 0.000000 1.000000 61.00000 48 'point symmetry operation' ? ? -0.342840 0.939394 0.000000 47.20589 -0.939394 -0.342840 0.000000 276.02323 0.000000 0.000000 1.000000 67.10000 49 'point symmetry operation' ? ? -0.596225 0.802817 0.000000 94.24410 -0.802817 -0.596225 0.000000 290.39984 0.000000 0.000000 1.000000 73.20000 50 'point symmetry operation' ? ? -0.800208 0.599722 0.000000 143.42879 -0.599722 -0.800208 0.000000 290.78193 0.000000 0.000000 1.000000 79.30000 51 'point symmetry operation' ? ? -0.937889 0.346936 0.000000 190.68467 -0.346936 -0.937889 0.000000 277.13782 0.000000 0.000000 1.000000 85.40000 52 'point symmetry operation' ? ? -0.997859 0.065403 0.000000 232.09627 -0.065403 -0.997859 0.000000 250.59805 0.000000 0.000000 1.000000 91.50000 53 'point symmetry operation' ? ? -0.975149 -0.221548 0.000000 264.23234 0.221548 -0.975149 0.000000 213.36159 0.000000 0.000000 1.000000 97.60000 54 'point symmetry operation' ? ? -0.871642 -0.490143 0.000000 284.43018 0.490143 -0.871642 0.000000 168.51377 0.000000 0.000000 1.000000 103.70000 55 'point symmetry operation' ? ? 0.389928 0.920845 0.000000 -38.58254 -0.920845 0.389928 0.000000 184.76337 0.000000 -0.000000 1.000000 -54.90000 56 'point symmetry operation' ? ? 0.111469 0.993768 0.000000 -13.98579 -0.993768 0.111469 0.000000 227.35774 0.000000 -0.000000 1.000000 -48.80000 57 'point symmetry operation' ? ? -0.176226 0.984350 0.000000 21.72503 -0.984350 -0.176226 0.000000 261.18106 0.000000 0.000000 1.000000 -42.70000 58 'point symmetry operation' ? ? -0.449319 0.893371 0.000000 65.59105 -0.893371 -0.449319 0.000000 283.43083 0.000000 0.000000 1.000000 -36.60000 59 'point symmetry operation' ? ? -0.685183 0.728371 0.000000 113.97766 -0.728371 -0.685183 0.000000 292.26351 0.000000 0.000000 1.000000 -30.50000 60 'point symmetry operation' ? ? -0.864275 0.503020 0.000000 162.87569 -0.503020 -0.864275 0.000000 286.94724 0.000000 0.000000 1.000000 -24.40000 61 'point symmetry operation' ? ? -0.971755 0.235990 0.000000 208.23360 -0.235990 -0.971755 0.000000 267.92251 0.000000 0.000000 1.000000 -18.30000 62 'point symmetry operation' ? ? -0.998719 -0.050593 0.000000 246.29317 0.050593 -0.998719 0.000000 236.76566 0.000000 0.000000 1.000000 -12.20000 63 'point symmetry operation' ? ? -0.942932 -0.332984 0.000000 273.90090 0.332984 -0.942932 0.000000 196.05825 0.000000 0.000000 1.000000 -6.10000 64 'point symmetry operation' ? ? -0.809017 -0.587785 0.000000 288.76930 0.587785 -0.809017 0.000000 149.17317 0.000000 0.000000 1.000000 0.00000 65 'point symmetry operation' ? ? -0.608069 -0.793884 0.000000 289.66641 0.793884 -0.608069 0.000000 99.99517 0.000000 0.000000 1.000000 6.10000 66 'point symmetry operation' ? ? -0.356738 -0.934204 0.000000 276.51791 0.934204 -0.356738 0.000000 52.59900 0.000000 0.000000 1.000000 12.20000 67 'point symmetry operation' ? ? -0.075849 -0.997119 0.000000 250.41324 0.997119 -0.075849 0.000000 10.91176 0.000000 0.000000 1.000000 18.30000 68 'point symmetry operation' ? ? 0.211325 -0.977416 0.000000 213.51536 0.977416 0.211325 0.000000 -21.61248 -0.000000 0.000000 1.000000 24.40000 69 'point symmetry operation' ? ? 0.480989 -0.876727 0.000000 168.88150 0.876727 0.480989 0.000000 -42.27886 -0.000000 0.000000 1.000000 30.50000 70 'point symmetry operation' ? ? 0.710799 -0.703395 0.000000 120.20990 0.703395 0.710799 0.000000 -49.37501 -0.000000 0.000000 1.000000 36.60000 71 'point symmetry operation' ? ? 0.881715 -0.471782 0.000000 71.53334 0.471782 0.881715 0.000000 -42.31298 -0.000000 0.000000 1.000000 42.70000 72 'point symmetry operation' ? ? 0.979575 -0.201078 0.000000 26.88500 0.201078 0.979575 0.000000 -21.67791 -0.000000 0.000000 1.000000 48.80000 73 'point symmetry operation' ? ? 0.996270 0.086286 0.000000 -10.03568 -0.086286 0.996270 0.000000 10.82046 0.000000 -0.000000 1.000000 54.90000 74 'point symmetry operation' ? ? 0.930418 0.366501 0.000000 -36.16957 -0.366501 0.930418 0.000000 52.48939 0.000000 -0.000000 1.000000 61.00000 75 'point symmetry operation' ? ? 0.787473 0.616349 0.000000 -49.35130 -0.616349 0.787473 0.000000 99.87633 0.000000 -0.000000 1.000000 67.10000 76 'point symmetry operation' ? ? 0.579281 0.815128 0.000000 -48.48866 -0.815128 0.579281 0.000000 149.05494 0.000000 -0.000000 1.000000 73.20000 77 'point symmetry operation' ? ? 0.323092 0.946368 0.000000 -33.65314 -0.946368 0.323092 0.000000 195.95044 0.000000 -0.000000 1.000000 79.30000 78 'point symmetry operation' ? ? 0.040132 0.999194 0.000000 -6.07395 -0.999194 0.040132 0.000000 236.67719 0.000000 -0.000000 1.000000 85.40000 79 'point symmetry operation' ? ? -0.246153 0.969231 0.000000 31.96376 -0.969231 -0.246153 0.000000 267.86072 0.000000 0.000000 1.000000 91.50000 80 'point symmetry operation' ? ? -0.512043 0.858960 0.000000 77.30832 -0.858960 -0.512043 0.000000 286.91724 0.000000 0.000000 1.000000 97.60000 81 'point symmetry operation' ? ? -0.735506 0.677518 0.000000 126.20261 -0.677518 -0.735506 0.000000 292.26779 0.000000 0.000000 1.000000 103.70000 82 'point symmetry operation' ? ? 0.996270 -0.086286 0.000000 10.93191 0.086286 0.996270 0.000000 -9.91416 -0.000000 0.000000 1.000000 -54.90000 83 'point symmetry operation' ? ? 0.979575 0.201078 0.000000 -21.97693 -0.201078 0.979575 0.000000 26.64112 0.000000 -0.000000 1.000000 -48.80000 84 'point symmetry operation' ? ? 0.881715 0.471782 0.000000 -43.10957 -0.471782 0.881715 0.000000 71.05611 0.000000 -0.000000 1.000000 -42.70000 85 'point symmetry operation' ? ? 0.710799 0.703395 0.000000 -50.71501 -0.703395 0.710799 0.000000 119.65074 0.000000 -0.000000 1.000000 -36.60000 86 'point symmetry operation' ? ? 0.480989 0.876727 0.000000 -44.16310 -0.876727 0.480989 0.000000 168.39858 0.000000 -0.000000 1.000000 -30.50000 87 'point symmetry operation' ? ? 0.211325 0.977416 0.000000 -23.99671 -0.977416 0.211325 0.000000 213.26056 0.000000 -0.000000 1.000000 -24.40000 88 'point symmetry operation' ? ? -0.075849 0.997119 0.000000 8.11325 -0.997119 -0.075849 0.000000 250.51953 0.000000 0.000000 1.000000 -18.30000 89 'point symmetry operation' ? ? -0.356738 0.934204 0.000000 49.50623 -0.934204 -0.356738 0.000000 277.08833 0.000000 0.000000 1.000000 -12.20000 90 'point symmetry operation' ? ? -0.608069 0.793884 0.000000 96.75253 -0.793884 -0.608069 0.000000 290.76556 0.000000 0.000000 1.000000 -6.10000 91 'point symmetry operation' ? ? -0.809017 0.587785 0.000000 145.93748 -0.587785 -0.809017 0.000000 290.41796 0.000000 0.000000 1.000000 0.00000 92 'point symmetry operation' ? ? -0.942932 0.332984 0.000000 192.98576 -0.332984 -0.942932 0.000000 276.07433 0.000000 0.000000 1.000000 6.10000 93 'point symmetry operation' ? ? -0.998719 0.050593 0.000000 233.99909 -0.050593 -0.998719 0.000000 248.92314 0.000000 0.000000 1.000000 12.20000 94 'point symmetry operation' ? ? -0.971755 -0.235990 0.000000 265.57923 0.235990 -0.971755 0.000000 211.21406 0.000000 0.000000 1.000000 18.30000 95 'point symmetry operation' ? ? -0.864275 -0.503020 0.000000 285.10954 0.503020 -0.864275 0.000000 166.07154 0.000000 0.000000 1.000000 24.40000 96 'point symmetry operation' ? ? -0.685183 -0.728371 0.000000 290.97181 0.728371 -0.685183 0.000000 117.23596 0.000000 0.000000 1.000000 30.50000 97 'point symmetry operation' ? ? -0.449319 -0.893371 0.000000 282.68030 0.893371 -0.449319 0.000000 68.75369 0.000000 0.000000 1.000000 36.60000 98 'point symmetry operation' ? ? -0.176226 -0.984350 0.000000 260.92203 0.984350 -0.176226 0.000000 24.64181 0.000000 0.000000 1.000000 42.70000 99 'point symmetry operation' ? ? 0.111469 -0.993768 0.000000 227.49981 0.993768 0.111469 0.000000 -11.44469 -0.000000 0.000000 1.000000 48.80000 100 'point symmetry operation' ? ? 0.389928 -0.920845 0.000000 185.18291 0.920845 0.389928 0.000000 -36.51580 -0.000000 0.000000 1.000000 54.90000 101 'point symmetry operation' ? ? 0.636078 -0.771625 0.000000 137.47759 0.771625 0.636078 0.000000 -48.49420 -0.000000 0.000000 1.000000 61.00000 102 'point symmetry operation' ? ? 0.829525 -0.558469 0.000000 88.33655 0.558469 0.829525 0.000000 -46.38739 -0.000000 0.000000 1.000000 67.10000 103 'point symmetry operation' ? ? 0.954240 -0.299041 0.000000 41.83148 0.299041 0.954240 0.000000 -30.36995 -0.000000 0.000000 1.000000 73.20000 104 'point symmetry operation' ? ? 0.999890 -0.014835 0.000000 1.81564 0.014835 0.999890 0.000000 -1.76903 -0.000000 0.000000 1.000000 79.30000 105 'point symmetry operation' ? ? 0.962692 0.270600 0.000000 -28.39537 -0.270600 0.962692 0.000000 37.04560 0.000000 -0.000000 1.000000 85.40000 106 'point symmetry operation' ? ? 0.845728 0.533615 0.000000 -46.29836 -0.533615 0.845728 0.000000 82.85785 0.000000 -0.000000 1.000000 91.50000 107 'point symmetry operation' ? ? 0.658689 0.752415 0.000000 -50.40995 -0.752415 0.658689 0.000000 131.87188 0.000000 -0.000000 1.000000 97.60000 108 'point symmetry operation' ? ? 0.417074 0.908872 0.000000 -40.38946 -0.908872 0.417074 0.000000 180.02653 0.000000 -0.000000 1.000000 103.70000 109 'point symmetry operation' ? ? 0.225801 -0.974173 0.000000 211.38204 0.974173 0.225801 0.000000 -22.98179 -0.000000 0.000000 1.000000 -54.90000 110 'point symmetry operation' ? ? 0.493942 -0.869495 0.000000 166.44652 0.869495 0.493942 0.000000 -42.98375 -0.000000 0.000000 1.000000 -48.80000 111 'point symmetry operation' ? ? 0.721156 -0.692773 0.000000 117.67500 0.692773 0.721156 0.000000 -49.35709 -0.000000 0.000000 1.000000 -42.70000 112 'point symmetry operation' ? ? 0.888617 -0.458650 0.000000 69.10856 0.458650 0.888617 0.000000 -41.57374 -0.000000 0.000000 1.000000 -36.60000 113 'point symmetry operation' ? ? 0.982450 -0.186524 0.000000 24.77126 0.186524 0.982450 0.000000 -20.27859 -0.000000 0.000000 1.000000 -30.50000 114 'point symmetry operation' ? ? 0.994881 0.101056 0.000000 -11.66326 -0.101056 0.994881 0.000000 12.76391 0.000000 -0.000000 1.000000 -24.40000 115 'point symmetry operation' ? ? 0.924878 0.380263 0.000000 -37.17612 -0.380263 0.924878 0.000000 54.81594 0.000000 -0.000000 1.000000 -18.30000 116 'point symmetry operation' ? ? 0.778243 0.627963 0.000000 -49.65343 -0.627963 0.778243 0.000000 102.39322 0.000000 -0.000000 1.000000 -12.20000 117 'point symmetry operation' ? ? 0.567125 0.823632 0.000000 -48.06133 -0.823632 0.567125 0.000000 151.55362 0.000000 -0.000000 1.000000 -6.10000 118 'point symmetry operation' ? ? 0.309017 0.951057 0.000000 -32.53176 -0.951057 0.309017 0.000000 198.22388 0.000000 -0.000000 1.000000 0.00000 119 'point symmetry operation' ? ? 0.025305 0.999680 0.000000 -4.35144 -0.999680 0.025305 0.000000 238.53702 0.000000 -0.000000 1.000000 6.10000 120 'point symmetry operation' ? ? -0.260505 0.965473 0.000000 34.14469 -0.965473 -0.260505 0.000000 269.15283 0.000000 0.000000 1.000000 12.20000 121 'point symmetry operation' ? ? -0.524729 0.851269 0.000000 79.76696 -0.851269 -0.524729 0.000000 287.53458 0.000000 0.000000 1.000000 18.30000 122 'point symmetry operation' ? ? -0.745476 0.666532 0.000000 128.73525 -0.666532 -0.745476 0.000000 292.15921 0.000000 0.000000 1.000000 24.40000 123 'point symmetry operation' ? ? -0.904455 0.426569 0.000000 176.99218 -0.426569 -0.904455 0.000000 282.64353 0.000000 0.000000 1.000000 30.50000 124 'point symmetry operation' ? ? -0.988494 0.151261 0.000000 220.53935 -0.151261 -0.988494 0.000000 259.77599 0.000000 0.000000 1.000000 36.60000 125 'point symmetry operation' ? ? -0.990629 -0.136580 0.000000 255.76856 0.136580 -0.990629 0.000000 225.45133 0.000000 0.000000 1.000000 42.70000 126 'point symmetry operation' ? ? -0.910684 -0.413104 0.000000 279.76083 0.413104 -0.910684 0.000000 182.51357 0.000000 0.000000 1.000000 48.80000 127 'point symmetry operation' ? ? -0.755282 -0.655400 0.000000 290.52823 0.655400 -0.755282 0.000000 134.52041 0.000000 0.000000 1.000000 54.90000 128 'point symmetry operation' ? ? -0.537300 -0.843391 0.000000 287.17861 0.843391 -0.537300 0.000000 85.44842 0.000000 0.000000 1.000000 61.00000 129 'point symmetry operation' ? ? -0.274798 -0.961502 0.000000 269.98950 0.961502 -0.274798 0.000000 39.36356 0.000000 0.000000 1.000000 67.10000 130 'point symmetry operation' ? ? 0.010472 -0.999945 0.000000 240.38515 0.999945 0.010472 0.000000 0.08427 -0.000000 0.000000 1.000000 73.20000 131 'point symmetry operation' ? ? 0.294874 -0.955536 0.000000 200.81848 0.955536 0.294874 0.000000 -29.13488 -0.000000 0.000000 1.000000 79.30000 132 'point symmetry operation' ? ? 0.554844 -0.831954 0.000000 154.56787 0.831954 0.554844 0.000000 -45.87289 -0.000000 0.000000 1.000000 85.40000 133 'point symmetry operation' ? ? 0.768842 -0.639439 0.000000 105.46549 0.639439 0.768842 0.000000 -48.74288 -0.000000 0.000000 1.000000 91.50000 134 'point symmetry operation' ? ? 0.919135 -0.393942 0.000000 57.57983 0.393942 0.919135 0.000000 -37.50706 -0.000000 0.000000 1.000000 97.60000 135 'point symmetry operation' ? ? 0.993272 -0.115804 0.000000 14.87854 0.115804 0.993272 0.000000 -13.09641 -0.000000 0.000000 1.000000 103.70000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-11-22 2 'Structure model' 1 1 2018-10-17 3 'Structure model' 1 2 2019-11-06 4 'Structure model' 1 3 2019-12-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' refine 2 3 'Structure model' em_software 3 4 'Structure model' atom_sites # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_software.name' 2 3 'Structure model' '_em_software.version' 3 4 'Structure model' '_atom_sites.fract_transf_matrix[1][1]' 4 4 'Structure model' '_atom_sites.fract_transf_matrix[2][2]' 5 4 'Structure model' '_atom_sites.fract_transf_matrix[3][3]' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0158 _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 5OXE _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 5OXE _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 94645 _em_3d_reconstruction.resolution 3.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details 'distilled water' _em_buffer.pH 7.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Aeropyrum pernix bacilliform virus 1' _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 5OXE _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 50.0 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification 37037 _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI POLARA 300' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.0 _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate SPECIES _em_virus_entity.virus_type VIRION _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 5OXE _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 5OXE _em_experiment.id 1 _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 5OXE _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 47 ? ? -113.37 -75.40 2 1 SER A 48 ? ? -130.85 -41.59 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A PRO 3 ? A PRO 3 4 1 Y 1 A LYS 4 ? A LYS 4 5 1 Y 1 A ALA 5 ? A ALA 5 6 1 Y 1 A THR 6 ? A THR 6 7 1 Y 1 A LEU 7 ? A LEU 7 8 1 Y 1 A VAL 8 ? A VAL 8 9 1 Y 1 A LYS 9 ? A LYS 9 10 1 Y 1 A GLY 80 ? A GLY 80 11 1 Y 1 A LEU 81 ? A LEU 81 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 700542 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Aeropyrum pernix bacilliform virus 1' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 1.0 _em_image_recording.average_exposure_time 0.2 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 QUANTUM (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower 0 _em_imaging_optics.energyfilter_name 'K2 Summit' _em_imaging_optics.energyfilter_upper 20 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details 'Overlapping segments extracted from helical particles' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 169316 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? SerialEM ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 3 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? SPRING ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? SPRING ? 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? SPRING ? 1 ? ? 13 'MODEL REFINEMENT' ? REFMAC ? ? 1 ? 14 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.id 1 _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.ncbi_tax_id 56636 _em_virus_natural_host.organism 'Aeropyrum pernix' _em_virus_natural_host.strain ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Wellcome Trust' 'United Kingdom' 203141/Z/16/Z 1 'Wellcome Trust' 'United Kingdom' 060208/Z/00/Z 2 'Wellcome Trust' 'United Kingdom' 093305/Z/10/Z 3 'European Research Council' 'United Kingdom' 649053 4 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? #