HEADER SURFACTANT PROTEIN 07-SEP-17 5OXS TITLE CRYSTAL STRUCTURE OF HUMAN LUNG SURFACTANT PROTEIN D TRIMERIC FRAGMENT TITLE 2 WITH BOUND LIGAND SALMONELLA ENTERICA MINNESOTA R5 OLIGOSACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PULMONARY SURFACTANT-ASSOCIATED PROTEIN D; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: TRIMERIC NECK + CARBOHYDRATE RECOGNITION DOMAIN; COMPND 5 SYNONYM: SP-D,COLLECTIN-7,LUNG SURFACTANT PROTEIN D; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFTPD, COLEC7, PSPD, SFTP4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRIMERIC RECOMBINANT COLLECTIN FRAGMENT, NECK+CRD, ALPHA-HELICAL KEYWDS 2 COILED COIL, CARBOHYDRATE RECOGNITION DOMAIN, LECTIN, SUGAR BINDING KEYWDS 3 PROTEIN, SURFACTANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SHRIVE,T.J.GREENHOUGH REVDAT 4 17-JAN-24 5OXS 1 HETSYN LINK REVDAT 3 29-JUL-20 5OXS 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 27-JUN-18 5OXS 1 JRNL REVDAT 1 20-JUN-18 5OXS 0 JRNL AUTH J.R.LITTLEJOHN,R.F.DA SILVA,W.A.NEALE,C.C.SMALLCOMBE, JRNL AUTH 2 H.W.CLARK,R.A.MACKAY,A.S.WATSON,J.MADSEN,D.W.HOOD,I.BURNS, JRNL AUTH 3 T.J.GREENHOUGH,A.K.SHRIVE JRNL TITL STRUCTURAL DEFINITION OF HSP-D RECOGNITION OF SALMONELLA JRNL TITL 2 ENTERICA LPS INNER CORE OLIGOSACCHARIDES REVEALS ALTERNATIVE JRNL TITL 3 BINDING MODES FOR THE SAME LPS. JRNL REF PLOS ONE V. 13 99175 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 29912941 JRNL DOI 10.1371/JOURNAL.PONE.0199175 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.W.CLARK,R.M.MACKAY,M.E.DEADMAN,D.W.HOOD,J.MADSEN, REMARK 1 AUTH 2 E.R.MOXON,J.P.TOWNSEND,K.B.M.REID,A.AHMED,A.J.SHAW, REMARK 1 AUTH 3 T.J.GREENHOUGH,A.K.SHRIVE REMARK 1 TITL CRYSTAL STRUCTURE OF A COMPLEX OF SURFACTANT PROTEIN D REMARK 1 TITL 2 (SP-D) AND HAEMOPHILUS INFLUENZAE LIPOPOLYSACCHARIDE REVEALS REMARK 1 TITL 3 SHIELDING OF CORE STRUCTURES IN SP-D-RESISTANT STRAINS. REMARK 1 REF INFECT. IMMUN. V. 84 1585 2016 REMARK 1 REFN ESSN 1098-5522 REMARK 1 PMID 26953329 REMARK 1 DOI 10.1128/IAI.01239-15 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 70522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3647 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5182 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 293 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 161 REMARK 3 SOLVENT ATOMS : 477 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.683 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3786 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3317 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5141 ; 1.324 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7801 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 5.321 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;37.538 ;26.057 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 598 ;10.956 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ; 8.401 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 592 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4156 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 708 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5OXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74199 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 56.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDBID 1PW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.0, 16% PEG 6000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.25500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 GLY A 182 REMARK 465 LEU A 183 REMARK 465 LYS A 184 REMARK 465 GLY A 185 REMARK 465 ASP A 186 REMARK 465 LYS A 187 REMARK 465 GLY A 188 REMARK 465 ILE A 189 REMARK 465 PRO A 190 REMARK 465 GLY A 191 REMARK 465 ASP A 192 REMARK 465 LYS A 193 REMARK 465 GLY A 194 REMARK 465 ALA A 195 REMARK 465 LYS A 196 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 SER A 199 REMARK 465 GLY A 200 REMARK 465 LEU A 201 REMARK 465 PRO A 202 REMARK 465 ASP A 203 REMARK 465 GLY B 179 REMARK 465 SER B 180 REMARK 465 PRO B 181 REMARK 465 GLY B 182 REMARK 465 LEU B 183 REMARK 465 LYS B 184 REMARK 465 GLY B 185 REMARK 465 ASP B 186 REMARK 465 LYS B 187 REMARK 465 GLY B 188 REMARK 465 ILE B 189 REMARK 465 PRO B 190 REMARK 465 GLY B 191 REMARK 465 ASP B 192 REMARK 465 LYS B 193 REMARK 465 GLY B 194 REMARK 465 ALA B 195 REMARK 465 LYS B 196 REMARK 465 GLY B 197 REMARK 465 GLU B 198 REMARK 465 SER B 199 REMARK 465 GLY B 200 REMARK 465 LEU B 201 REMARK 465 PRO B 202 REMARK 465 GLY C 179 REMARK 465 SER C 180 REMARK 465 PRO C 181 REMARK 465 GLY C 182 REMARK 465 LEU C 183 REMARK 465 LYS C 184 REMARK 465 GLY C 185 REMARK 465 ASP C 186 REMARK 465 LYS C 187 REMARK 465 GLY C 188 REMARK 465 ILE C 189 REMARK 465 PRO C 190 REMARK 465 GLY C 191 REMARK 465 ASP C 192 REMARK 465 LYS C 193 REMARK 465 GLY C 194 REMARK 465 ALA C 195 REMARK 465 LYS C 196 REMARK 465 GLY C 197 REMARK 465 GLU C 198 REMARK 465 SER C 199 REMARK 465 GLY C 200 REMARK 465 LEU C 201 REMARK 465 PRO C 202 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 316 50.53 -140.89 REMARK 500 SER A 328 56.27 -157.61 REMARK 500 SER B 328 50.12 -142.57 REMARK 500 VAL C 313 -88.38 -106.61 REMARK 500 ASN C 316 52.35 -140.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 297 OD1 REMARK 620 2 ASP A 297 OD2 50.2 REMARK 620 3 GLU A 301 OE1 99.2 79.2 REMARK 620 4 GLU A 301 OE2 120.9 72.9 49.9 REMARK 620 5 ASP A 324 OD1 160.2 148.8 84.2 76.1 REMARK 620 6 GLU A 329 O 90.4 125.8 151.7 142.5 78.4 REMARK 620 7 ASP A 330 OD1 72.0 113.4 80.5 129.1 89.5 77.2 REMARK 620 8 HOH A 525 O 103.2 80.2 127.9 78.3 89.6 74.5 151.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 321 OE1 REMARK 620 2 ASN A 323 OD1 76.1 REMARK 620 3 GLU A 329 OE1 144.9 75.0 REMARK 620 4 ASN A 341 OD1 67.6 142.1 142.7 REMARK 620 5 ASP A 342 O 126.1 140.5 70.2 73.8 REMARK 620 6 ASP A 342 OD1 72.3 85.9 86.1 93.0 73.8 REMARK 620 7 GLC D 4 O3 76.7 77.6 115.5 83.8 134.8 147.5 REMARK 620 8 GLC D 4 O4 132.9 117.4 78.9 82.2 73.8 147.3 64.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 297 OD1 REMARK 620 2 ASP B 297 OD2 46.6 REMARK 620 3 GLU B 301 OE1 100.0 75.2 REMARK 620 4 GLU B 301 OE2 119.6 74.2 45.2 REMARK 620 5 ASP B 324 OD1 160.9 151.0 84.8 76.8 REMARK 620 6 GLU B 329 O 87.2 124.2 155.6 146.9 81.4 REMARK 620 7 ASP B 330 OD1 69.5 102.3 78.3 123.0 93.8 82.7 REMARK 620 8 HOH B 520 O 106.0 87.3 122.9 77.9 86.2 76.1 158.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 321 OE1 REMARK 620 2 ASN B 323 OD1 73.2 REMARK 620 3 GLU B 329 OE1 144.0 76.6 REMARK 620 4 ASN B 341 OD1 67.4 137.4 145.9 REMARK 620 5 ASP B 342 O 126.1 144.8 72.8 75.2 REMARK 620 6 ASP B 342 OD1 72.5 84.6 85.5 98.2 76.2 REMARK 620 7 GMH E 2 O6 76.9 77.1 115.0 78.9 132.0 147.8 REMARK 620 8 GMH E 2 O7 134.8 118.1 77.5 81.5 71.6 146.7 65.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 321 OE1 REMARK 620 2 ASN C 323 OD1 74.9 REMARK 620 3 GLU C 329 OE1 145.8 77.4 REMARK 620 4 ASN C 341 OD1 67.1 139.8 142.8 REMARK 620 5 ASP C 342 O 125.0 143.4 71.0 73.4 REMARK 620 6 ASP C 342 OD1 73.4 85.0 84.6 95.9 74.4 REMARK 620 7 GMH F 2 O7 135.3 118.6 76.3 82.6 71.3 144.6 REMARK 620 8 GMH F 2 O6 77.2 77.6 115.7 81.8 132.9 148.9 66.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5OXR RELATED DB: PDB REMARK 900 CONTAINS SAME PROTEIN COMPLEXED WITH A SHORTER OLIGOSACCHARIDE REMARK 900 LIGAND (S. MINNESOTA R7) DBREF 5OXS A 181 355 UNP P35247 SFTPD_HUMAN 201 375 DBREF 5OXS B 181 355 UNP P35247 SFTPD_HUMAN 201 375 DBREF 5OXS C 181 355 UNP P35247 SFTPD_HUMAN 201 375 SEQADV 5OXS GLY A 179 UNP P35247 EXPRESSION TAG SEQADV 5OXS SER A 180 UNP P35247 EXPRESSION TAG SEQADV 5OXS GLY B 179 UNP P35247 EXPRESSION TAG SEQADV 5OXS SER B 180 UNP P35247 EXPRESSION TAG SEQADV 5OXS GLY C 179 UNP P35247 EXPRESSION TAG SEQADV 5OXS SER C 180 UNP P35247 EXPRESSION TAG SEQRES 1 A 177 GLY SER PRO GLY LEU LYS GLY ASP LYS GLY ILE PRO GLY SEQRES 2 A 177 ASP LYS GLY ALA LYS GLY GLU SER GLY LEU PRO ASP VAL SEQRES 3 A 177 ALA SER LEU ARG GLN GLN VAL GLU ALA LEU GLN GLY GLN SEQRES 4 A 177 VAL GLN HIS LEU GLN ALA ALA PHE SER GLN TYR LYS LYS SEQRES 5 A 177 VAL GLU LEU PHE PRO ASN GLY GLN SER VAL GLY GLU LYS SEQRES 6 A 177 ILE PHE LYS THR ALA GLY PHE VAL LYS PRO PHE THR GLU SEQRES 7 A 177 ALA GLN LEU LEU CYS THR GLN ALA GLY GLY GLN LEU ALA SEQRES 8 A 177 SER PRO ARG SER ALA ALA GLU ASN ALA ALA LEU GLN GLN SEQRES 9 A 177 LEU VAL VAL ALA LYS ASN GLU ALA ALA PHE LEU SER MET SEQRES 10 A 177 THR ASP SER LYS THR GLU GLY LYS PHE THR TYR PRO THR SEQRES 11 A 177 GLY GLU SER LEU VAL TYR SER ASN TRP ALA PRO GLY GLU SEQRES 12 A 177 PRO ASN ASP ASP GLY GLY SER GLU ASP CYS VAL GLU ILE SEQRES 13 A 177 PHE THR ASN GLY LYS TRP ASN ASP ARG ALA CYS GLY GLU SEQRES 14 A 177 LYS ARG LEU VAL VAL CYS GLU PHE SEQRES 1 B 177 GLY SER PRO GLY LEU LYS GLY ASP LYS GLY ILE PRO GLY SEQRES 2 B 177 ASP LYS GLY ALA LYS GLY GLU SER GLY LEU PRO ASP VAL SEQRES 3 B 177 ALA SER LEU ARG GLN GLN VAL GLU ALA LEU GLN GLY GLN SEQRES 4 B 177 VAL GLN HIS LEU GLN ALA ALA PHE SER GLN TYR LYS LYS SEQRES 5 B 177 VAL GLU LEU PHE PRO ASN GLY GLN SER VAL GLY GLU LYS SEQRES 6 B 177 ILE PHE LYS THR ALA GLY PHE VAL LYS PRO PHE THR GLU SEQRES 7 B 177 ALA GLN LEU LEU CYS THR GLN ALA GLY GLY GLN LEU ALA SEQRES 8 B 177 SER PRO ARG SER ALA ALA GLU ASN ALA ALA LEU GLN GLN SEQRES 9 B 177 LEU VAL VAL ALA LYS ASN GLU ALA ALA PHE LEU SER MET SEQRES 10 B 177 THR ASP SER LYS THR GLU GLY LYS PHE THR TYR PRO THR SEQRES 11 B 177 GLY GLU SER LEU VAL TYR SER ASN TRP ALA PRO GLY GLU SEQRES 12 B 177 PRO ASN ASP ASP GLY GLY SER GLU ASP CYS VAL GLU ILE SEQRES 13 B 177 PHE THR ASN GLY LYS TRP ASN ASP ARG ALA CYS GLY GLU SEQRES 14 B 177 LYS ARG LEU VAL VAL CYS GLU PHE SEQRES 1 C 177 GLY SER PRO GLY LEU LYS GLY ASP LYS GLY ILE PRO GLY SEQRES 2 C 177 ASP LYS GLY ALA LYS GLY GLU SER GLY LEU PRO ASP VAL SEQRES 3 C 177 ALA SER LEU ARG GLN GLN VAL GLU ALA LEU GLN GLY GLN SEQRES 4 C 177 VAL GLN HIS LEU GLN ALA ALA PHE SER GLN TYR LYS LYS SEQRES 5 C 177 VAL GLU LEU PHE PRO ASN GLY GLN SER VAL GLY GLU LYS SEQRES 6 C 177 ILE PHE LYS THR ALA GLY PHE VAL LYS PRO PHE THR GLU SEQRES 7 C 177 ALA GLN LEU LEU CYS THR GLN ALA GLY GLY GLN LEU ALA SEQRES 8 C 177 SER PRO ARG SER ALA ALA GLU ASN ALA ALA LEU GLN GLN SEQRES 9 C 177 LEU VAL VAL ALA LYS ASN GLU ALA ALA PHE LEU SER MET SEQRES 10 C 177 THR ASP SER LYS THR GLU GLY LYS PHE THR TYR PRO THR SEQRES 11 C 177 GLY GLU SER LEU VAL TYR SER ASN TRP ALA PRO GLY GLU SEQRES 12 C 177 PRO ASN ASP ASP GLY GLY SER GLU ASP CYS VAL GLU ILE SEQRES 13 C 177 PHE THR ASN GLY LYS TRP ASN ASP ARG ALA CYS GLY GLU SEQRES 14 C 177 LYS ARG LEU VAL VAL CYS GLU PHE HET K5B D 1 15 HET GMH D 2 13 HET GMH D 3 13 HET GLC D 4 11 HET K5B E 1 15 HET GMH E 2 13 HET GMH E 3 13 HET GLC E 4 11 HET K5B F 1 15 HET GMH F 2 13 HET GMH F 3 13 HET GLC F 4 11 HET CA A 401 1 HET CA A 402 1 HET CA B 401 1 HET CA B 402 1 HET CA C 402 1 HETNAM K5B 4,7-ANHYDRO-3-DEOXY-D-GLUCO-OCT-2-ULOSONIC ACID HETNAM GMH L-GLYCERO-ALPHA-D-MANNO-HEPTOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN K5B 4,7-ANHYDRO-3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID HETSYN GMH L-GLYCERO-ALPHA-D-MANNO-HEPTOSE; L-GLYCERO-D-MANNO- HETSYN 2 GMH HEPTOSE; L-GLYCERO-MANNO-HEPTOSE; L-GLYCERO-D-MANNO- HETSYN 3 GMH HEPTOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 4 K5B 3(C8 H12 O7) FORMUL 4 GMH 6(C7 H14 O7) FORMUL 4 GLC 3(C6 H12 O6) FORMUL 7 CA 5(CA 2+) FORMUL 12 HOH *477(H2 O) HELIX 1 AA1 VAL A 204 PHE A 234 1 31 HELIX 2 AA2 PHE A 254 ALA A 264 1 11 HELIX 3 AA3 SER A 273 ASN A 288 1 16 HELIX 4 AA4 ASP A 324 SER A 328 5 5 HELIX 5 AA5 VAL B 204 PHE B 234 1 31 HELIX 6 AA6 PHE B 254 ALA B 264 1 11 HELIX 7 AA7 SER B 273 ASN B 288 1 16 HELIX 8 AA8 ASP B 324 SER B 328 5 5 HELIX 9 AA9 VAL C 204 PHE C 234 1 31 HELIX 10 AB1 PHE C 254 ALA C 264 1 11 HELIX 11 AB2 SER C 273 ASN C 288 1 16 HELIX 12 AB3 ASP C 324 SER C 328 5 5 SHEET 1 AA1 4 GLY A 237 VAL A 240 0 SHEET 2 AA1 4 LYS A 243 PRO A 253 -1 O PHE A 245 N GLN A 238 SHEET 3 AA1 4 LYS A 348 PHE A 355 -1 O ARG A 349 N LYS A 252 SHEET 4 AA1 4 GLN A 267 LEU A 268 -1 N GLN A 267 O GLU A 354 SHEET 1 AA2 3 ALA A 291 PHE A 292 0 SHEET 2 AA2 3 CYS A 331 ILE A 334 -1 O ILE A 334 N ALA A 291 SHEET 3 AA2 3 TRP A 340 ARG A 343 -1 O ASN A 341 N GLU A 333 SHEET 1 AA3 4 GLY B 237 VAL B 240 0 SHEET 2 AA3 4 LYS B 243 PRO B 253 -1 O PHE B 245 N GLN B 238 SHEET 3 AA3 4 LYS B 348 PHE B 355 -1 O CYS B 353 N LYS B 246 SHEET 4 AA3 4 GLN B 267 LEU B 268 -1 N GLN B 267 O GLU B 354 SHEET 1 AA4 3 ALA B 291 PHE B 292 0 SHEET 2 AA4 3 CYS B 331 ILE B 334 -1 O ILE B 334 N ALA B 291 SHEET 3 AA4 3 TRP B 340 ARG B 343 -1 O ASN B 341 N GLU B 333 SHEET 1 AA5 4 GLY C 237 VAL C 240 0 SHEET 2 AA5 4 LYS C 243 PRO C 253 -1 O LYS C 243 N VAL C 240 SHEET 3 AA5 4 LYS C 348 PHE C 355 -1 O PHE C 355 N ILE C 244 SHEET 4 AA5 4 GLN C 267 LEU C 268 -1 N GLN C 267 O GLU C 354 SHEET 1 AA6 4 LYS C 303 THR C 305 0 SHEET 2 AA6 4 ALA C 291 SER C 298 -1 N SER C 298 O LYS C 303 SHEET 3 AA6 4 CYS C 331 ILE C 334 -1 O VAL C 332 N LEU C 293 SHEET 4 AA6 4 TRP C 340 ARG C 343 -1 O ASN C 341 N GLU C 333 SSBOND 1 CYS A 261 CYS A 353 1555 1555 2.03 SSBOND 2 CYS A 331 CYS A 345 1555 1555 2.07 SSBOND 3 CYS B 261 CYS B 353 1555 1555 2.07 SSBOND 4 CYS B 331 CYS B 345 1555 1555 2.05 SSBOND 5 CYS C 261 CYS C 353 1555 1555 2.05 SSBOND 6 CYS C 331 CYS C 345 1555 1555 2.06 LINK O5 K5B D 1 C1 GMH D 2 1555 1555 1.44 LINK O3 GMH D 2 C1 GMH D 3 1555 1555 1.45 LINK O3 GMH D 3 C1 GLC D 4 1555 1555 1.44 LINK O5 K5B E 1 C1 GMH E 2 1555 1555 1.44 LINK O3 GMH E 2 C1 GMH E 3 1555 1555 1.44 LINK O3 GMH E 3 C1 GLC E 4 1555 1555 1.44 LINK O5 K5B F 1 C1 GMH F 2 1555 1555 1.44 LINK O3 GMH F 2 C1 GMH F 3 1555 1555 1.44 LINK O3 GMH F 3 C1 GLC F 4 1555 1555 1.44 LINK OD1 ASP A 297 CA CA A 402 1555 1555 2.63 LINK OD2 ASP A 297 CA CA A 402 1555 1555 2.51 LINK OE1 GLU A 301 CA CA A 402 1555 1555 2.55 LINK OE2 GLU A 301 CA CA A 402 1555 1555 2.60 LINK OE1 GLU A 321 CA CA A 401 1555 1555 2.63 LINK OD1 ASN A 323 CA CA A 401 1555 1555 2.46 LINK OD1 ASP A 324 CA CA A 402 1555 1555 2.52 LINK OE1 GLU A 329 CA CA A 401 1555 1555 2.42 LINK O GLU A 329 CA CA A 402 1555 1555 2.52 LINK OD1 ASP A 330 CA CA A 402 1555 1555 2.39 LINK OD1 ASN A 341 CA CA A 401 1555 1555 2.50 LINK O ASP A 342 CA CA A 401 1555 1555 2.61 LINK OD1 ASP A 342 CA CA A 401 1555 1555 2.47 LINK CA CA A 401 O3 GLC D 4 1555 1555 2.38 LINK CA CA A 401 O4 GLC D 4 1555 1555 2.36 LINK CA CA A 402 O HOH A 525 1555 1555 2.52 LINK OD1 ASP B 297 CA CA B 402 1555 1555 2.81 LINK OD2 ASP B 297 CA CA B 402 1555 1555 2.71 LINK OE1 GLU B 301 CA CA B 402 1555 1555 2.73 LINK OE2 GLU B 301 CA CA B 402 1555 1555 2.96 LINK OE1 GLU B 321 CA CA B 401 1555 1555 2.61 LINK OD1 ASN B 323 CA CA B 401 1555 1555 2.42 LINK OD1 ASP B 324 CA CA B 402 1555 1555 2.93 LINK OE1 GLU B 329 CA CA B 401 1555 1555 2.49 LINK O GLU B 329 CA CA B 402 1555 1555 2.51 LINK OD1 ASP B 330 CA CA B 402 1555 1555 2.68 LINK OD1 ASN B 341 CA CA B 401 1555 1555 2.45 LINK O ASP B 342 CA CA B 401 1555 1555 2.55 LINK OD1 ASP B 342 CA CA B 401 1555 1555 2.38 LINK CA CA B 401 O6 GMH E 2 1555 1555 2.34 LINK CA CA B 401 O7 GMH E 2 1555 1555 2.38 LINK CA CA B 402 O HOH B 520 1555 1555 2.15 LINK OE1 GLU C 321 CA CA C 402 1555 1555 2.57 LINK OD1 ASN C 323 CA CA C 402 1555 1555 2.47 LINK OE1 GLU C 329 CA CA C 402 1555 1555 2.44 LINK OD1 ASN C 341 CA CA C 402 1555 1555 2.44 LINK O ASP C 342 CA CA C 402 1555 1555 2.62 LINK OD1 ASP C 342 CA CA C 402 1555 1555 2.40 LINK CA CA C 402 O7 GMH F 2 1555 1555 2.34 LINK CA CA C 402 O6 GMH F 2 1555 1555 2.35 CISPEP 1 PHE A 234 PRO A 235 0 5.15 CISPEP 2 GLU A 321 PRO A 322 0 0.32 CISPEP 3 PHE B 234 PRO B 235 0 1.25 CISPEP 4 GLU B 321 PRO B 322 0 -3.74 CISPEP 5 PHE C 234 PRO C 235 0 0.39 CISPEP 6 GLU C 321 PRO C 322 0 -8.23 CRYST1 55.679 108.510 56.170 90.00 92.89 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017960 0.000000 0.000907 0.00000 SCALE2 0.000000 0.009216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017826 0.00000