HEADER VIRAL PROTEIN 11-SEP-17 5OYL TITLE VSV G CR2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR; COMPND 6 CHAIN: D; COMPND 7 SYNONYM: LDL RECEPTOR; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RECOMBINANT VESICULAR STOMATITIS INDIANA VIRUS SOURCE 3 RVSV-G/GFP; SOURCE 4 ORGANISM_TAXID: 582817; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: LDLR; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS C, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.A.ALBERTINI,L.BELOT,P.LEGRAND,Y.GAUDIN REVDAT 4 17-JAN-24 5OYL 1 HETSYN REVDAT 3 29-JUL-20 5OYL 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 18-APR-18 5OYL 1 JRNL REVDAT 1 21-MAR-18 5OYL 0 JRNL AUTH J.NIKOLIC,L.BELOT,H.RAUX,P.LEGRAND,Y.GAUDIN,A.A ALBERTINI JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF LDL-RECEPTOR FAMILY JRNL TITL 2 MEMBERS BY VSV GLYCOPROTEIN. JRNL REF NAT COMMUN V. 9 1029 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29531262 JRNL DOI 10.1038/S41467-018-03432-4 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.4 REMARK 3 NUMBER OF REFLECTIONS : 29832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1493 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3577 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.230 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OYL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978570 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39498 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 49.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.18400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5I2S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29% PEG 3000, 100 MM TRIS-HCL PH 8.5, REMARK 280 200 MM LISO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 45.02000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.99231 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 171.92667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 45.02000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.99231 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 171.92667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 45.02000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.99231 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 171.92667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 45.02000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.99231 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 171.92667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 45.02000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.99231 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 171.92667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 45.02000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.99231 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 171.92667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.98462 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 343.85333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.98462 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 343.85333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.98462 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 343.85333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.98462 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 343.85333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.98462 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 343.85333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.98462 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 343.85333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 690 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 719 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 726 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 605 O HOH A 643 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 630 O HOH A 630 2655 1.78 REMARK 500 O HOH A 715 O HOH A 715 11565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 74.31 -115.02 REMARK 500 ASN A 34 -115.11 47.82 REMARK 500 LYS A 47 -22.66 -150.96 REMARK 500 TYR A 73 -78.53 -66.90 REMARK 500 PRO A 107 1.64 -66.11 REMARK 500 SER A 113 76.59 -103.23 REMARK 500 TYR A 116 -70.37 -75.14 REMARK 500 HIS A 132 107.14 -160.06 REMARK 500 LYS A 225 -6.99 74.50 REMARK 500 ASP A 358 70.27 -154.72 REMARK 500 ASP A 359 86.98 -155.47 REMARK 500 GLU A 364 -124.52 45.05 REMARK 500 VAL A 366 -161.73 -128.24 REMARK 500 HIS A 409 38.81 -92.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 502 REMARK 610 NAG A 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP D 66 O REMARK 620 2 ASP D 69 OD1 91.2 REMARK 620 3 GLN D 71 O 173.9 82.8 REMARK 620 4 ASP D 73 OD2 92.8 100.5 88.7 REMARK 620 5 ASP D 79 OD2 106.2 160.8 79.7 87.1 REMARK 620 6 GLU D 80 OE2 94.3 76.5 83.9 172.4 93.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5OY9 RELATED DB: PDB DBREF 5OYL A 1 410 UNP B7UCZ5 B7UCZ5_9RHAB 17 426 DBREF 5OYL D 44 85 UNP P01130 LDLR_HUMAN 65 106 SEQADV 5OYL GLY D 40 UNP P01130 EXPRESSION TAG SEQADV 5OYL PRO D 41 UNP P01130 EXPRESSION TAG SEQADV 5OYL LEU D 42 UNP P01130 EXPRESSION TAG SEQADV 5OYL GLY D 43 UNP P01130 EXPRESSION TAG SEQRES 1 A 410 LYS PHE THR ILE VAL PHE PRO HIS ASN GLN LYS GLY ASN SEQRES 2 A 410 TRP LYS ASN VAL PRO SER ASN TYR HIS TYR CYS PRO SER SEQRES 3 A 410 SER SER ASP LEU ASN TRP HIS ASN ASP LEU ILE GLY THR SEQRES 4 A 410 ALA LEU GLN VAL LYS MET PRO LYS SER HIS MLZ ALA ILE SEQRES 5 A 410 GLN ALA ASP GLY TRP MET CYS HIS ALA SER LYS TRP VAL SEQRES 6 A 410 THR THR CYS ASP PHE ARG TRP TYR GLY PRO LYS TYR ILE SEQRES 7 A 410 THR HIS SER ILE ARG SER PHE THR PRO SER VAL GLU GLN SEQRES 8 A 410 CYS LYS GLU SER ILE GLU GLN THR LYS GLN GLY THR TRP SEQRES 9 A 410 LEU ASN PRO GLY PHE PRO PRO GLN SER CYS GLY TYR ALA SEQRES 10 A 410 THR VAL THR ASP ALA GLU ALA VAL ILE VAL GLN VAL THR SEQRES 11 A 410 PRO HIS HIS VAL LEU VAL ASP GLU TYR THR GLY GLU TRP SEQRES 12 A 410 VAL ASP SER GLN PHE ILE ASN GLY LYS CYS SER ASN TYR SEQRES 13 A 410 ILE CYS PRO THR VAL HIS ASN SER THR THR TRP HIS SER SEQRES 14 A 410 ASP TYR LYS VAL LYS GLY LEU CYS ASP SER ASN LEU ILE SEQRES 15 A 410 SER MET ASP ILE THR PHE PHE SER GLU ASP GLY GLU LEU SEQRES 16 A 410 SER SER LEU GLY LYS GLU GLY THR GLY PHE ARG SER ASN SEQRES 17 A 410 TYR PHE ALA TYR GLU THR GLY GLY LYS ALA CYS LYS MET SEQRES 18 A 410 GLN TYR CYS LYS HIS TRP GLY VAL ARG LEU PRO SER GLY SEQRES 19 A 410 VAL TRP PHE GLU MET ALA ASP LYS ASP LEU PHE ALA ALA SEQRES 20 A 410 ALA ARG PHE PRO GLU CYS PRO GLU GLY SER SER ILE SER SEQRES 21 A 410 ALA PRO SER GLN THR SER VAL ASP VAL SER LEU ILE GLN SEQRES 22 A 410 ASP VAL GLU ARG ILE LEU ASP TYR SER LEU CYS GLN GLU SEQRES 23 A 410 THR TRP SER LYS ILE ARG ALA GLY LEU PRO ILE SER PRO SEQRES 24 A 410 VAL ASP LEU SER TYR LEU ALA PRO LYS ASN PRO GLY THR SEQRES 25 A 410 GLY PRO ALA PHE THR ILE ILE ASN GLY THR LEU LYS TYR SEQRES 26 A 410 PHE GLU THR ARG TYR ILE ARG VAL ASP ILE ALA ALA PRO SEQRES 27 A 410 ILE LEU SER ARG MET VAL GLY MET ILE SER GLY THR THR SEQRES 28 A 410 THR GLU ARG GLU LEU TRP ASP ASP TRP ALA PRO TYR GLU SEQRES 29 A 410 ASP VAL GLU ILE GLY PRO ASN GLY VAL LEU ARG THR SER SEQRES 30 A 410 SER GLY TYR LYS PHE PRO LEU TYR MET ILE GLY HIS GLY SEQRES 31 A 410 MET LEU ASP SER ASP LEU HIS LEU SER SER LYS ALA GLN SEQRES 32 A 410 VAL PHE GLU HIS PRO HIS ILE SEQRES 1 D 46 GLY PRO LEU GLY SER VAL THR CYS LYS SER GLY ASP PHE SEQRES 2 D 46 SER CYS GLY GLY ARG VAL ASN ARG CYS ILE PRO GLN PHE SEQRES 3 D 46 TRP ARG CYS ASP GLY GLN VAL ASP CYS ASP ASN GLY SER SEQRES 4 D 46 ASP GLU GLN GLY CYS PRO PRO MODRES 5OYL MLZ A 50 LYS MODIFIED RESIDUE HET MLZ A 50 10 HET NAG A 501 14 HET NAG A 502 14 HET NAG A 503 14 HET CA A 504 1 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET GOL A 510 6 HET GOL D 101 6 HET CA D 102 1 HETNAM MLZ N-METHYL-LYSINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MLZ C7 H16 N2 O2 FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 6 CA 2(CA 2+) FORMUL 7 GOL 7(C3 H8 O3) FORMUL 15 HOH *149(H2 O) HELIX 1 AA1 LYS A 47 ILE A 52 5 6 HELIX 2 AA2 SER A 88 GLN A 101 1 14 HELIX 3 AA3 PHE A 148 ASN A 150 5 3 HELIX 4 AA4 GLU A 194 LEU A 198 5 5 HELIX 5 AA5 ASP A 241 ARG A 249 1 9 HELIX 6 AA6 ASP A 268 ILE A 272 5 5 HELIX 7 AA7 GLN A 273 ALA A 293 1 21 HELIX 8 AA8 SER A 298 TYR A 304 1 7 HELIX 9 AA9 PRO A 370 GLY A 372 5 3 HELIX 10 AB1 PHE A 382 ILE A 387 1 6 HELIX 11 AB2 ASP A 393 LEU A 398 5 6 HELIX 12 AB3 PRO D 63 ARG D 67 5 5 HELIX 13 AB4 GLY D 77 GLN D 81 5 5 SHEET 1 AA1 3 PHE A 2 PRO A 7 0 SHEET 2 AA1 3 THR A 322 ILE A 335 -1 O VAL A 333 N ILE A 4 SHEET 3 AA1 3 GLY A 311 ILE A 319 -1 N GLY A 313 O THR A 328 SHEET 1 AA2 4 LYS A 15 ASN A 16 0 SHEET 2 AA2 4 THR A 322 ILE A 335 -1 O TYR A 325 N LYS A 15 SHEET 3 AA2 4 VAL A 344 ILE A 347 -1 O MET A 346 N ASP A 334 SHEET 4 AA2 4 GLU A 353 GLU A 355 -1 O ARG A 354 N GLY A 345 SHEET 1 AA3 7 GLU A 213 THR A 214 0 SHEET 2 AA3 7 GLY A 204 ARG A 206 -1 N PHE A 205 O GLU A 213 SHEET 3 AA3 7 ILE A 182 SER A 190 -1 N PHE A 189 O GLY A 204 SHEET 4 AA3 7 ILE A 37 MET A 45 -1 N VAL A 43 O MET A 184 SHEET 5 AA3 7 TRP A 236 MET A 239 -1 O GLU A 238 N LYS A 44 SHEET 6 AA3 7 HIS A 226 ARG A 230 -1 N VAL A 229 O PHE A 237 SHEET 7 AA3 7 CYS A 219 TYR A 223 -1 N CYS A 219 O ARG A 230 SHEET 1 AA4 3 HIS A 80 PHE A 85 0 SHEET 2 AA4 3 GLY A 56 THR A 67 -1 N LYS A 63 O ARG A 83 SHEET 3 AA4 3 ASP A 121 PRO A 131 -1 O THR A 130 N MET A 58 SHEET 1 AA5 4 HIS A 80 PHE A 85 0 SHEET 2 AA5 4 GLY A 56 THR A 67 -1 N LYS A 63 O ARG A 83 SHEET 3 AA5 4 THR A 166 SER A 169 -1 O THR A 166 N CYS A 59 SHEET 4 AA5 4 ILE A 157 PRO A 159 -1 N CYS A 158 O TRP A 167 SHEET 1 AA6 3 LEU A 135 VAL A 136 0 SHEET 2 AA6 3 TRP A 143 VAL A 144 -1 O VAL A 144 N LEU A 135 SHEET 3 AA6 3 LYS A 152 CYS A 153 -1 O CYS A 153 N TRP A 143 SHEET 1 AA7 5 ILE A 339 LEU A 340 0 SHEET 2 AA7 5 GLY A 379 LYS A 381 -1 O TYR A 380 N LEU A 340 SHEET 3 AA7 5 LEU A 374 THR A 376 -1 N LEU A 374 O LYS A 381 SHEET 4 AA7 5 VAL A 366 ILE A 368 -1 N GLU A 367 O ARG A 375 SHEET 5 AA7 5 ALA A 361 TYR A 363 -1 N TYR A 363 O VAL A 366 SHEET 1 AA8 2 PHE D 52 SER D 53 0 SHEET 2 AA8 2 CYS D 61 ILE D 62 -1 O ILE D 62 N PHE D 52 SSBOND 1 CYS A 24 CYS A 284 1555 1555 2.07 SSBOND 2 CYS A 59 CYS A 92 1555 1555 2.06 SSBOND 3 CYS A 68 CYS A 114 1555 1555 2.04 SSBOND 4 CYS A 153 CYS A 158 1555 1555 2.07 SSBOND 5 CYS A 177 CYS A 224 1555 1555 2.04 SSBOND 6 CYS A 219 CYS A 253 1555 1555 2.03 SSBOND 7 CYS D 47 CYS D 61 1555 1555 2.03 SSBOND 8 CYS D 54 CYS D 74 1555 1555 2.04 SSBOND 9 CYS D 68 CYS D 83 1555 1555 2.07 LINK C HIS A 49 N MLZ A 50 1555 1555 1.34 LINK C MLZ A 50 N ALA A 51 1555 1555 1.33 LINK ND2 ASN A 163 C1 NAG A 501 1555 1555 1.44 LINK OE2 GLU A 201 CA CA A 504 1555 1555 2.98 LINK O TRP D 66 CA CA D 102 1555 1555 2.31 LINK OD1 ASP D 69 CA CA D 102 1555 1555 2.47 LINK O GLN D 71 CA CA D 102 1555 1555 2.28 LINK OD2 ASP D 73 CA CA D 102 1555 1555 2.26 LINK OD2 ASP D 79 CA CA D 102 1555 1555 2.41 LINK OE2 GLU D 80 CA CA D 102 1555 1555 2.36 CISPEP 1 CYS D 83 PRO D 84 0 4.24 CRYST1 90.040 90.040 515.780 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011106 0.006412 0.000000 0.00000 SCALE2 0.000000 0.012824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001939 0.00000