HEADER TRANSFERASE 19-OCT-16 5PA1 TITLE RAT CATECHOL O-METHYLTRANSFERASE IN COMPLEX WITH SAH AND 6-(4- TITLE 2 FLUOROPHENYL)QUINOLIN-8-OL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATECHOL O-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SOLUBLE FORM, RESIDUES 44-264; COMPND 5 EC: 2.1.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: COMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS METHYLTRANSFERASE, NEUROTRANSMITTER DEGRADATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.EHLER,C.LERNER,M.G.RUDOLPH REVDAT 4 03-APR-24 5PA1 1 REMARK REVDAT 3 17-NOV-21 5PA1 1 REMARK REVDAT 2 21-FEB-18 5PA1 1 REMARK REVDAT 1 22-NOV-17 5PA1 0 JRNL AUTH C.LERNER,R.JAKOB-ROETNE,K.GROEBKE-ZBINDEN,B.BUETTELMANN, JRNL AUTH 2 M.G.RUDOLPH JRNL TITL CRYSTAL STRUCTURE OF A COMT COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 56777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1679 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.044 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.045 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.568 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1845 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1207 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2518 ; 2.036 ; 2.032 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2979 ; 1.071 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ; 5.053 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;39.837 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 325 ;11.554 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;26.206 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 283 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2000 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 337 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1095 ; 2.085 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 440 ; 0.924 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1777 ; 2.966 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 750 ; 4.383 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 731 ; 5.976 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3052 ; 2.062 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 251 ;11.764 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3008 ; 4.241 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NNN IS A CHES MOLECULE. HYDROGENS HAVE REMARK 3 BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED REMARK 3 INDIVIDUALLY REMARK 4 REMARK 4 5PA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1001400406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62737 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.240 REMARK 200 RESOLUTION RANGE LOW (A) : 32.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.910 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.05800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INHOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, CHES, PH 9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.02350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.46600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.10250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.46600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.02350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.10250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 216 REMARK 465 SER A 217 REMARK 465 PRO A 218 REMARK 465 ASP A 219 REMARK 465 LYS A 220 REMARK 465 SER A 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 536 O HOH A 613 1.73 REMARK 500 O HOH A 527 O HOH A 613 1.79 REMARK 500 O HOH A 541 O HOH A 595 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 450 O HOH A 518 3555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 161 CG ARG A 161 CD -0.191 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 21 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 55 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 75 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 95 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 95 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 146 CG - CD - NE ANGL. DEV. = 12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 36 -62.41 -121.20 REMARK 500 MET A 40 39.55 -81.02 REMARK 500 TYR A 68 -109.54 61.27 REMARK 500 ASP A 133 -79.56 -91.97 REMARK 500 ASP A 141 42.60 -157.69 REMARK 500 HIS A 142 -154.54 -109.61 REMARK 500 SER A 196 -145.79 -153.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 646 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 647 DISTANCE = 7.51 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 OD1 REMARK 620 2 ASP A 169 OD2 92.6 REMARK 620 3 ASN A 170 OD1 88.8 84.6 REMARK 620 4 7JS A 308 O11 161.7 104.1 85.2 REMARK 620 5 HOH A 420 O 98.4 91.2 171.9 89.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7JS A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues D1D A 305 and NHE A REMARK 800 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues D1D A 305 and NHE A REMARK 800 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues D1D A 305 and NHE A REMARK 800 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues D1D A 305 and NHE A REMARK 800 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues D1D A 305 and NHE A REMARK 800 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues D1D A 305 and NHE A REMARK 800 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues D1D A 305 and NHE A REMARK 800 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues D1D A 305 and NHE A REMARK 800 306 DBREF 5PA1 A 1 221 UNP P22734 COMT_RAT 44 264 SEQRES 1 A 221 MET GLY ASP THR LYS GLU GLN ARG ILE LEU ARG TYR VAL SEQRES 2 A 221 GLN GLN ASN ALA LYS PRO GLY ASP PRO GLN SER VAL LEU SEQRES 3 A 221 GLU ALA ILE ASP THR TYR CYS THR GLN LYS GLU TRP ALA SEQRES 4 A 221 MET ASN VAL GLY ASP ALA LYS GLY GLN ILE MET ASP ALA SEQRES 5 A 221 VAL ILE ARG GLU TYR SER PRO SER LEU VAL LEU GLU LEU SEQRES 6 A 221 GLY ALA TYR CYS GLY TYR SER ALA VAL ARG MET ALA ARG SEQRES 7 A 221 LEU LEU GLN PRO GLY ALA ARG LEU LEU THR MET GLU MET SEQRES 8 A 221 ASN PRO ASP TYR ALA ALA ILE THR GLN GLN MET LEU ASN SEQRES 9 A 221 PHE ALA GLY LEU GLN ASP LYS VAL THR ILE LEU ASN GLY SEQRES 10 A 221 ALA SER GLN ASP LEU ILE PRO GLN LEU LYS LYS LYS TYR SEQRES 11 A 221 ASP VAL ASP THR LEU ASP MET VAL PHE LEU ASP HIS TRP SEQRES 12 A 221 LYS ASP ARG TYR LEU PRO ASP THR LEU LEU LEU GLU LYS SEQRES 13 A 221 CYS GLY LEU LEU ARG LYS GLY THR VAL LEU LEU ALA ASP SEQRES 14 A 221 ASN VAL ILE VAL PRO GLY THR PRO ASP PHE LEU ALA TYR SEQRES 15 A 221 VAL ARG GLY SER SER SER PHE GLU CYS THR HIS TYR SER SEQRES 16 A 221 SER TYR LEU GLU TYR MET LYS VAL VAL ASP GLY LEU GLU SEQRES 17 A 221 LYS ALA ILE TYR GLN GLY PRO SER SER PRO ASP LYS SER HET MG A 301 1 HET CL A 302 1 HET SO4 A 303 5 HET SO4 A 304 5 HET D1D A 305 8 HET NHE A 306 13 HET SAH A 307 26 HET 7JS A 308 18 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM D1D (4S,5S)-1,2-DITHIANE-4,5-DIOL HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM 7JS 6-(4-FLUOROPHENYL)QUINOLIN-8-OL HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 2 MG MG 2+ FORMUL 3 CL CL 1- FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 D1D C4 H8 O2 S2 FORMUL 7 NHE C8 H17 N O3 S FORMUL 8 SAH C14 H20 N6 O5 S FORMUL 9 7JS C15 H10 F N O FORMUL 10 HOH *247(H2 O) HELIX 1 AA1 THR A 4 ALA A 17 1 14 HELIX 2 AA2 ASP A 21 LYS A 36 1 16 HELIX 3 AA3 VAL A 42 SER A 58 1 17 HELIX 4 AA4 GLY A 70 ARG A 78 1 9 HELIX 5 AA5 ASN A 92 GLY A 107 1 16 HELIX 6 AA6 ALA A 118 ILE A 123 1 6 HELIX 7 AA7 PRO A 124 LEU A 126 5 3 HELIX 8 AA8 TRP A 143 ASP A 145 5 3 HELIX 9 AA9 ARG A 146 CYS A 157 1 12 HELIX 10 AB1 THR A 176 SER A 186 1 11 SHEET 1 AA1 7 VAL A 112 ASN A 116 0 SHEET 2 AA1 7 ARG A 85 GLU A 90 1 N THR A 88 O THR A 113 SHEET 3 AA1 7 LEU A 61 LEU A 65 1 N GLU A 64 O LEU A 87 SHEET 4 AA1 7 MET A 137 LEU A 140 1 O PHE A 139 N LEU A 63 SHEET 5 AA1 7 VAL A 165 ALA A 168 1 O LEU A 167 N VAL A 138 SHEET 6 AA1 7 VAL A 204 TYR A 212 -1 O GLU A 208 N ALA A 168 SHEET 7 AA1 7 PHE A 189 TYR A 197 -1 N TYR A 194 O LEU A 207 LINK S1 D1D A 305 C3' NHE A 306 1555 1555 1.62 LINK C1 D1D A 305 C2' NHE A 306 1555 1555 1.61 LINK C2 D1D A 305 C3' NHE A 306 1555 1555 1.64 LINK O2 D1D A 305 C2' NHE A 306 1555 1555 1.51 LINK C3 D1D A 305 C1' NHE A 306 1555 1555 1.63 LINK C4 D1D A 305 C4' NHE A 306 1555 1555 1.40 LINK S4 D1D A 305 C5' NHE A 306 1555 1555 1.78 LINK S4 D1D A 305 C4' NHE A 306 1555 1555 1.56 LINK OD1 ASP A 141 MG MG A 301 1555 1555 2.07 LINK OD2 ASP A 169 MG MG A 301 1555 1555 2.08 LINK OD1 ASN A 170 MG MG A 301 1555 1555 2.19 LINK MG MG A 301 O11 7JS A 308 1555 1555 2.15 LINK MG MG A 301 O HOH A 420 1555 1555 1.99 CISPEP 1 VAL A 173 PRO A 174 0 -3.73 CISPEP 2 VAL A 173 PRO A 174 0 -0.71 SITE 1 AC1 5 ASP A 141 ASP A 169 ASN A 170 7JS A 308 SITE 2 AC1 5 HOH A 420 SITE 1 AC2 3 ASP A 44 ALA A 45 TYR A 200 SITE 1 AC3 5 PRO A 82 GLY A 83 ARG A 85 LYS A 111 SITE 2 AC3 5 LYS A 128 SITE 1 AC4 5 TRP A 143 LYS A 144 7JS A 308 HOH A 408 SITE 2 AC4 5 HOH A 508 SITE 1 AC5 22 MET A 40 ASN A 41 VAL A 42 GLY A 66 SITE 2 AC5 22 ALA A 67 TYR A 68 TYR A 71 SER A 72 SITE 3 AC5 22 GLU A 90 MET A 91 TYR A 95 GLY A 117 SITE 4 AC5 22 ALA A 118 SER A 119 GLN A 120 ASP A 141 SITE 5 AC5 22 HIS A 142 TRP A 143 7JS A 308 HOH A 430 SITE 6 AC5 22 HOH A 489 HOH A 526 SITE 1 AC6 16 ALA A 97 GLN A 100 GLN A 101 ASP A 141 SITE 2 AC6 16 HIS A 142 TRP A 143 LYS A 144 ASP A 169 SITE 3 AC6 16 ASN A 170 GLU A 199 MG A 301 SO4 A 304 SITE 4 AC6 16 D1D A 305 NHE A 306 SAH A 307 HOH A 420 SITE 1 AC7 13 GLU A 37 TRP A 38 ALA A 96 ALA A 97 SITE 2 AC7 13 GLN A 100 ILE A 114 LEU A 115 ASN A 116 SITE 3 AC7 13 MET A 201 7JS A 308 HOH A 405 HOH A 429 SITE 4 AC7 13 HOH A 537 SITE 1 AC8 13 GLU A 37 TRP A 38 ALA A 96 ALA A 97 SITE 2 AC8 13 GLN A 100 ILE A 114 LEU A 115 ASN A 116 SITE 3 AC8 13 MET A 201 7JS A 308 HOH A 405 HOH A 429 SITE 4 AC8 13 HOH A 537 SITE 1 AC9 13 GLU A 37 TRP A 38 ALA A 96 ALA A 97 SITE 2 AC9 13 GLN A 100 ILE A 114 LEU A 115 ASN A 116 SITE 3 AC9 13 MET A 201 7JS A 308 HOH A 405 HOH A 429 SITE 4 AC9 13 HOH A 537 SITE 1 AD1 13 GLU A 37 TRP A 38 ALA A 96 ALA A 97 SITE 2 AD1 13 GLN A 100 ILE A 114 LEU A 115 ASN A 116 SITE 3 AD1 13 MET A 201 7JS A 308 HOH A 405 HOH A 429 SITE 4 AD1 13 HOH A 537 SITE 1 AD2 13 GLU A 37 TRP A 38 ALA A 96 ALA A 97 SITE 2 AD2 13 GLN A 100 ILE A 114 LEU A 115 ASN A 116 SITE 3 AD2 13 MET A 201 7JS A 308 HOH A 405 HOH A 429 SITE 4 AD2 13 HOH A 537 SITE 1 AD3 13 GLU A 37 TRP A 38 ALA A 96 ALA A 97 SITE 2 AD3 13 GLN A 100 ILE A 114 LEU A 115 ASN A 116 SITE 3 AD3 13 MET A 201 7JS A 308 HOH A 405 HOH A 429 SITE 4 AD3 13 HOH A 537 SITE 1 AD4 13 GLU A 37 TRP A 38 ALA A 96 ALA A 97 SITE 2 AD4 13 GLN A 100 ILE A 114 LEU A 115 ASN A 116 SITE 3 AD4 13 MET A 201 7JS A 308 HOH A 405 HOH A 429 SITE 4 AD4 13 HOH A 537 SITE 1 AD5 13 GLU A 37 TRP A 38 ALA A 96 ALA A 97 SITE 2 AD5 13 GLN A 100 ILE A 114 LEU A 115 ASN A 116 SITE 3 AD5 13 MET A 201 7JS A 308 HOH A 405 HOH A 429 SITE 4 AD5 13 HOH A 537 CRYST1 50.047 54.205 80.932 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019981 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012356 0.00000