HEADER DNA BINDING PROTEIN 03-FEB-17 5PBP TITLE PANDDA ANALYSIS GROUP DEPOSITION -- CRYSTAL STRUCTURE OF BAZ2B AFTER TITLE 2 INITIAL REFINEMENT WITH NO LIGAND MODELLED (STRUCTURE 10) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HWALP4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAZ2B, KIAA1476; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PANDDA, SGC - DIAMOND I04-1 FRAGMENT SCREENING, BROMODOMAIN, KEYWDS 2 EPIGENETICS, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.M.PEARCE,T.KROJER,R.TALON,A.R.BRADLEY,M.FAIRHEAD,R.SETHI,N.WRIGHT, AUTHOR 2 E.MACLEAN,P.COLLINS,J.BRANDAO-NETO,A.DOUANGAMATH,Z.RENJIE,A.DIAS, AUTHOR 3 M.VOLLMAR,J.NG,P.E.BRENNAN,O.COX,C.BOUNTRA,C.H.ARROWSMITH,A.EDWARDS, AUTHOR 4 F.VON DELFT REVDAT 4 06-MAR-24 5PBP 1 REMARK REVDAT 3 04-OCT-17 5PBP 1 REMARK REVDAT 2 27-SEP-17 5PBP 1 JRNL REMARK REVDAT 1 22-MAR-17 5PBP 0 JRNL AUTH N.M.PEARCE,T.KROJER,A.R.BRADLEY,P.COLLINS,R.P.NOWAK,R.TALON, JRNL AUTH 2 B.D.MARSDEN,S.KELM,J.SHI,C.M.DEANE,F.VON DELFT JRNL TITL A MULTI-CRYSTAL METHOD FOR EXTRACTING OBSCURED JRNL TITL 2 CRYSTALLOGRAPHIC STATES FROM CONVENTIONALLY UNINTERPRETABLE JRNL TITL 3 ELECTRON DENSITY. JRNL REF NAT COMMUN V. 8 15123 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28436492 JRNL DOI 10.1038/NCOMMS15123 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 18045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 942 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1241 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.95000 REMARK 3 B22 (A**2) : -1.47000 REMARK 3 B33 (A**2) : -2.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.290 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 968 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 916 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1305 ; 1.926 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2126 ; 1.089 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 116 ; 6.200 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 45 ;37.546 ;24.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 181 ;11.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;18.870 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 142 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1064 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 209 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 464 ; 3.828 ; 3.356 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 463 ; 3.833 ; 3.346 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 580 ; 5.028 ; 4.997 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5PBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1001400461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19001 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 28.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 1.04400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3G0L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG600 -- 0.1M MES PH 6.0, PH 7, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.93300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.93300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.83800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.45100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.83800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.45100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.93300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.83800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.45100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.93300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.83800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.45100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2164 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1835 REMARK 465 HIS A 1836 REMARK 465 HIS A 1837 REMARK 465 HIS A 1838 REMARK 465 HIS A 1839 REMARK 465 HIS A 1840 REMARK 465 HIS A 1841 REMARK 465 SER A 1842 REMARK 465 SER A 1843 REMARK 465 GLY A 1844 REMARK 465 VAL A 1845 REMARK 465 ASP A 1846 REMARK 465 LEU A 1847 REMARK 465 GLY A 1848 REMARK 465 THR A 1849 REMARK 465 GLU A 1850 REMARK 465 ASN A 1851 REMARK 465 LEU A 1852 REMARK 465 TYR A 1853 REMARK 465 PHE A 1854 REMARK 465 GLN A 1855 REMARK 465 VAL A 1971 REMARK 465 SER A 1972 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1863 CG CD CE NZ REMARK 470 LYS A1868 CE NZ REMARK 470 LYS A1970 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2161 O HOH A 2239 2.04 REMARK 500 O HOH A 2221 O HOH A 2255 2.08 REMARK 500 OE1 GLU A 1945 O HOH A 2101 2.08 REMARK 500 O HOH A 2178 O HOH A 2207 2.09 REMARK 500 O HOH A 2238 O HOH A 2267 2.12 REMARK 500 OE1 GLU A 1927 O HOH A 2102 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2301 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A2302 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A2303 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH A2304 DISTANCE = 7.67 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 2001 DBREF 5PBP A 1858 1972 UNP Q9UIF8 BAZ2B_HUMAN 1954 2068 SEQADV 5PBP MET A 1835 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP HIS A 1836 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP HIS A 1837 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP HIS A 1838 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP HIS A 1839 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP HIS A 1840 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP HIS A 1841 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP SER A 1842 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP SER A 1843 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP GLY A 1844 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP VAL A 1845 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP ASP A 1846 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP LEU A 1847 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP GLY A 1848 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP THR A 1849 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP GLU A 1850 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP ASN A 1851 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP LEU A 1852 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP TYR A 1853 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP PHE A 1854 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP GLN A 1855 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP SER A 1856 UNP Q9UIF8 EXPRESSION TAG SEQADV 5PBP MET A 1857 UNP Q9UIF8 EXPRESSION TAG SEQRES 1 A 138 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 138 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER VAL LYS SEQRES 3 A 138 LYS PRO LYS ARG ASP ASP SER LYS ASP LEU ALA LEU CYS SEQRES 4 A 138 SER MET ILE LEU THR GLU MET GLU THR HIS GLU ASP ALA SEQRES 5 A 138 TRP PRO PHE LEU LEU PRO VAL ASN LEU LYS LEU VAL PRO SEQRES 6 A 138 GLY TYR LYS LYS VAL ILE LYS LYS PRO MET ASP PHE SER SEQRES 7 A 138 THR ILE ARG GLU LYS LEU SER SER GLY GLN TYR PRO ASN SEQRES 8 A 138 LEU GLU THR PHE ALA LEU ASP VAL ARG LEU VAL PHE ASP SEQRES 9 A 138 ASN CYS GLU THR PHE ASN GLU ASP ASP SER ASP ILE GLY SEQRES 10 A 138 ARG ALA GLY HIS ASN MET ARG LYS TYR PHE GLU LYS LYS SEQRES 11 A 138 TRP THR ASP THR PHE LYS VAL SER HET EDO A2001 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *204(H2 O) HELIX 1 AA1 LYS A 1868 THR A 1882 1 15 HELIX 2 AA2 HIS A 1883 LEU A 1890 5 8 HELIX 3 AA3 GLY A 1900 ILE A 1905 1 6 HELIX 4 AA4 ASP A 1910 SER A 1920 1 11 HELIX 5 AA5 ASN A 1925 ASN A 1944 1 20 HELIX 6 AA6 SER A 1948 LYS A 1970 1 23 SITE 1 AC1 3 ASN A1944 HOH A2119 HOH A2148 CRYST1 81.676 96.902 57.866 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012243 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010320 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017281 0.00000 TER 944 LYS A1970 HETATM 945 C1 EDO A2001 14.409 41.288 29.541 1.00 53.81 C HETATM 946 O1 EDO A2001 13.716 41.842 30.698 1.00 59.94 O HETATM 947 C2 EDO A2001 14.715 39.823 29.808 1.00 50.40 C HETATM 948 O2 EDO A2001 16.012 39.682 30.333 1.00 40.49 O HETATM 949 O HOH A2101 15.810 47.164 42.689 1.00 74.78 O HETATM 950 O HOH A2102 33.640 25.088 28.498 1.00 58.91 O HETATM 951 O HOH A2103 24.417 16.473 36.880 1.00 47.46 O HETATM 952 O HOH A2104 48.599 20.693 23.763 1.00 45.79 O HETATM 953 O HOH A2105 24.628 30.975 39.292 1.00 41.31 O HETATM 954 O HOH A2106 13.901 48.370 39.451 1.00 67.65 O HETATM 955 O HOH A2107 14.034 25.625 22.881 1.00 38.08 O HETATM 956 O HOH A2108 14.077 40.153 47.433 1.00 56.23 O HETATM 957 O HOH A2109 14.939 46.985 22.293 1.00 40.87 O HETATM 958 O HOH A2110 17.183 34.109 17.281 1.00 39.89 O HETATM 959 O HOH A2111 28.896 30.298 33.758 1.00 34.66 O HETATM 960 O HOH A2112 55.524 18.949 14.020 1.00 35.40 O HETATM 961 O HOH A2113 10.011 36.919 21.025 1.00 51.84 O HETATM 962 O HOH A2114 17.738 17.605 36.571 1.00 46.57 O HETATM 963 O HOH A2115 26.367 33.116 19.067 1.00 37.31 O HETATM 964 O HOH A2116 17.555 35.174 26.727 1.00 26.92 O HETATM 965 O HOH A2117 28.845 24.015 12.864 1.00 40.83 O HETATM 966 O HOH A2118 28.877 35.866 27.262 1.00 35.65 O HETATM 967 O HOH A2119 18.280 38.992 29.082 1.00 37.56 O HETATM 968 O HOH A2120 19.824 32.630 42.398 1.00 72.99 O HETATM 969 O HOH A2121 19.306 37.618 25.127 1.00 26.71 O HETATM 970 O HOH A2122 29.111 34.252 19.562 1.00 67.38 O HETATM 971 O HOH A2123 20.806 43.881 19.835 1.00 47.74 O HETATM 972 O HOH A2124 20.523 36.015 18.382 1.00 47.96 O HETATM 973 O HOH A2125 26.523 15.426 42.366 1.00 67.78 O HETATM 974 O HOH A2126 13.887 26.160 18.424 1.00 33.09 O HETATM 975 O HOH A2127 19.918 36.953 42.141 1.00 57.13 O HETATM 976 O HOH A2128 29.579 33.325 26.208 1.00 33.54 O HETATM 977 O HOH A2129 32.515 17.023 17.832 1.00 37.65 O HETATM 978 O HOH A2130 10.226 25.504 31.512 1.00 36.21 O HETATM 979 O HOH A2131 14.396 24.149 16.440 1.00 42.19 O HETATM 980 O HOH A2132 13.610 18.551 23.990 1.00 55.89 O HETATM 981 O HOH A2133 18.330 26.525 11.330 1.00 42.28 O HETATM 982 O HOH A2134 16.091 44.623 36.793 1.00 42.74 O HETATM 983 O HOH A2135 24.682 46.260 33.064 1.00 37.54 O HETATM 984 O HOH A2136 26.935 29.092 43.754 1.00 62.68 O HETATM 985 O HOH A2137 14.802 20.299 34.260 1.00 35.55 O HETATM 986 O HOH A2138 17.787 35.638 21.386 1.00 25.65 O HETATM 987 O HOH A2139 23.215 37.235 18.887 1.00 45.45 O HETATM 988 O HOH A2140 32.374 18.375 20.345 1.00 34.11 O HETATM 989 O HOH A2141 25.679 30.062 13.041 1.00 54.63 O HETATM 990 O HOH A2142 36.253 17.086 22.040 1.00 67.76 O HETATM 991 O HOH A2143 16.178 39.374 21.159 1.00 30.63 O HETATM 992 O HOH A2144 48.610 10.309 20.389 1.00 37.88 O HETATM 993 O HOH A2145 23.160 46.828 19.515 1.00 53.07 O HETATM 994 O HOH A2146 18.093 46.268 43.263 1.00 60.59 O HETATM 995 O HOH A2147 34.489 11.293 25.662 1.00 61.08 O HETATM 996 O HOH A2148 11.443 43.198 31.366 1.00 64.91 O HETATM 997 O HOH A2149 22.087 35.412 34.783 1.00 24.82 O HETATM 998 O HOH A2150 21.194 39.810 37.376 1.00 30.40 O HETATM 999 O HOH A2151 18.764 46.032 12.914 1.00 78.44 O HETATM 1000 O HOH A2152 18.981 36.355 28.603 1.00 33.67 O HETATM 1001 O HOH A2153 32.780 30.054 28.619 1.00 44.11 O HETATM 1002 O HOH A2154 10.877 33.511 26.956 1.00 29.00 O HETATM 1003 O HOH A2155 26.463 24.408 39.804 1.00 48.41 O HETATM 1004 O HOH A2156 26.698 37.839 39.413 1.00 63.04 O HETATM 1005 O HOH A2157 22.268 20.757 37.674 1.00 39.18 O HETATM 1006 O HOH A2158 15.050 35.527 26.336 1.00 27.12 O HETATM 1007 O HOH A2159 29.917 35.737 33.505 1.00 50.74 O HETATM 1008 O HOH A2160 50.632 17.804 19.833 1.00 34.87 O HETATM 1009 O HOH A2161 29.657 36.897 22.936 1.00 68.86 O HETATM 1010 O HOH A2162 16.600 15.553 24.719 1.00 50.21 O HETATM 1011 O HOH A2163 18.640 19.505 18.931 1.00 38.06 O HETATM 1012 O HOH A2164 12.488 48.385 28.810 0.50 94.17 O HETATM 1013 O HOH A2165 30.840 23.808 34.465 1.00 38.45 O HETATM 1014 O HOH A2166 27.763 35.184 37.764 1.00 54.22 O HETATM 1015 O HOH A2167 22.257 43.687 40.295 1.00 42.72 O HETATM 1016 O HOH A2168 30.514 33.578 30.536 1.00 40.20 O HETATM 1017 O HOH A2169 28.825 30.115 20.251 1.00 35.49 O HETATM 1018 O HOH A2170 19.845 43.938 42.684 1.00 42.42 O HETATM 1019 O HOH A2171 13.856 41.973 35.875 1.00 49.18 O HETATM 1020 O HOH A2172 10.901 40.990 39.633 1.00 50.28 O HETATM 1021 O HOH A2173 18.493 17.592 13.442 1.00 51.59 O HETATM 1022 O HOH A2174 22.739 31.399 13.419 1.00 55.84 O HETATM 1023 O HOH A2175 33.260 27.067 26.014 1.00 57.66 O HETATM 1024 O HOH A2176 8.773 36.236 43.836 1.00 59.68 O HETATM 1025 O HOH A2177 12.526 27.267 24.100 1.00 36.54 O HETATM 1026 O HOH A2178 28.354 28.557 16.400 1.00 47.67 O HETATM 1027 O HOH A2179 10.246 40.026 25.216 1.00 35.75 O HETATM 1028 O HOH A2180 28.596 32.608 21.831 1.00 48.19 O HETATM 1029 O HOH A2181 37.379 14.988 20.211 1.00 64.57 O HETATM 1030 O HOH A2182 20.886 37.303 36.373 1.00 27.39 O HETATM 1031 O HOH A2183 14.791 21.613 16.666 1.00 49.41 O HETATM 1032 O HOH A2184 23.787 32.922 16.420 1.00 43.11 O HETATM 1033 O HOH A2185 14.240 31.448 17.901 1.00 62.11 O HETATM 1034 O HOH A2186 33.891 20.953 28.520 1.00 68.00 O HETATM 1035 O HOH A2187 19.636 13.344 22.958 1.00 58.62 O HETATM 1036 O HOH A2188 25.684 12.581 19.262 1.00 35.03 O HETATM 1037 O HOH A2189 25.984 33.444 39.164 1.00 55.49 O HETATM 1038 O HOH A2190 19.309 29.198 12.448 1.00 39.34 O HETATM 1039 O HOH A2191 41.519 14.396 20.904 1.00 68.53 O HETATM 1040 O HOH A2192 23.968 34.454 36.496 1.00 37.36 O HETATM 1041 O HOH A2193 19.631 30.561 44.500 1.00 48.77 O HETATM 1042 O HOH A2194 7.204 27.487 42.456 1.00 52.54 O HETATM 1043 O HOH A2195 25.011 41.128 38.230 1.00 47.50 O HETATM 1044 O HOH A2196 32.918 13.357 27.713 1.00 66.04 O HETATM 1045 O HOH A2197 36.209 22.113 16.529 1.00 50.19 O HETATM 1046 O HOH A2198 31.079 12.016 23.301 1.00 44.42 O HETATM 1047 O HOH A2199 11.950 40.245 37.031 1.00 32.50 O HETATM 1048 O HOH A2200 16.938 37.414 23.165 1.00 23.99 O HETATM 1049 O HOH A2201 6.399 39.360 22.497 1.00 63.44 O HETATM 1050 O HOH A2202 12.007 20.536 25.950 1.00 64.72 O HETATM 1051 O HOH A2203 12.369 41.020 44.215 1.00 59.76 O HETATM 1052 O HOH A2204 12.304 22.841 37.733 1.00 37.81 O HETATM 1053 O HOH A2205 9.729 37.214 24.533 1.00 57.34 O HETATM 1054 O HOH A2206 23.033 30.817 10.051 1.00 63.04 O HETATM 1055 O HOH A2207 27.919 30.100 17.740 1.00 41.61 O HETATM 1056 O HOH A2208 25.125 21.628 16.020 1.00 30.59 O HETATM 1057 O HOH A2209 17.245 49.557 22.397 1.00 50.90 O HETATM 1058 O HOH A2210 15.040 52.249 23.907 1.00 50.22 O HETATM 1059 O HOH A2211 17.171 15.264 29.171 1.00 54.24 O HETATM 1060 O HOH A2212 26.186 43.171 25.143 1.00 43.26 O HETATM 1061 O HOH A2213 12.684 40.743 18.396 1.00 47.90 O HETATM 1062 O HOH A2214 23.857 44.521 18.299 1.00 66.74 O HETATM 1063 O HOH A2215 28.568 27.656 12.404 1.00 57.97 O HETATM 1064 O HOH A2216 12.058 37.561 28.427 1.00 49.80 O HETATM 1065 O HOH A2217 17.889 38.050 45.246 1.00 58.21 O HETATM 1066 O HOH A2218 33.897 24.759 31.090 1.00 51.17 O HETATM 1067 O HOH A2219 11.156 36.090 26.023 1.00 45.22 O HETATM 1068 O HOH A2220 22.042 18.181 37.679 1.00 50.69 O HETATM 1069 O HOH A2221 10.702 49.934 22.400 1.00 57.26 O HETATM 1070 O HOH A2222 7.771 31.826 29.061 1.00 60.50 O HETATM 1071 O HOH A2223 9.839 24.367 27.089 1.00 52.10 O HETATM 1072 O HOH A2224 10.707 41.847 29.333 1.00 84.28 O HETATM 1073 O HOH A2225 17.098 16.020 34.607 1.00 61.85 O HETATM 1074 O HOH A2226 43.804 20.319 22.806 1.00 67.70 O HETATM 1075 O HOH A2227 30.623 31.997 32.436 1.00 56.47 O HETATM 1076 O HOH A2228 27.696 39.546 32.576 1.00 52.70 O HETATM 1077 O HOH A2229 28.984 23.297 39.110 1.00 66.66 O HETATM 1078 O HOH A2230 9.046 27.759 31.907 1.00 41.55 O HETATM 1079 O HOH A2231 12.039 21.708 22.387 1.00 62.18 O HETATM 1080 O HOH A2232 8.205 23.855 32.051 1.00 69.60 O HETATM 1081 O HOH A2233 32.877 28.242 33.331 1.00 57.18 O HETATM 1082 O HOH A2234 47.596 19.590 27.530 1.00 57.23 O HETATM 1083 O HOH A2235 30.759 33.660 34.638 1.00 64.81 O HETATM 1084 O HOH A2236 29.954 34.505 23.176 1.00 47.29 O HETATM 1085 O HOH A2237 10.092 27.506 23.577 1.00 63.50 O HETATM 1086 O HOH A2238 30.905 38.678 30.373 1.00 67.97 O HETATM 1087 O HOH A2239 31.549 37.454 23.445 1.00 66.93 O HETATM 1088 O HOH A2240 33.425 23.521 33.603 1.00 53.99 O HETATM 1089 O HOH A2241 14.909 17.594 33.754 1.00 59.85 O HETATM 1090 O HOH A2242 25.176 18.321 44.248 1.00 58.66 O HETATM 1091 O HOH A2243 34.052 20.246 31.433 1.00 74.41 O HETATM 1092 O HOH A2244 19.803 30.680 10.906 1.00 65.19 O HETATM 1093 O HOH A2245 31.533 25.158 36.712 1.00 64.64 O HETATM 1094 O HOH A2246 11.528 40.048 27.934 1.00 56.36 O HETATM 1095 O HOH A2247 34.815 19.034 20.695 1.00 48.20 O HETATM 1096 O HOH A2248 33.294 30.370 31.792 1.00 63.53 O HETATM 1097 O HOH A2249 18.627 30.058 14.739 1.00 55.86 O HETATM 1098 O HOH A2250 17.924 36.195 18.642 1.00 31.81 O HETATM 1099 O HOH A2251 14.183 20.945 37.977 1.00 47.07 O HETATM 1100 O HOH A2252 8.064 32.157 26.635 1.00 60.22 O HETATM 1101 O HOH A2253 10.431 38.678 19.263 1.00 55.80 O HETATM 1102 O HOH A2254 11.426 48.856 17.478 1.00 95.90 O HETATM 1103 O HOH A2255 12.656 50.226 21.754 1.00 54.21 O HETATM 1104 O HOH A2256 22.132 12.949 17.790 1.00 69.76 O HETATM 1105 O HOH A2257 19.937 17.473 18.087 1.00 54.94 O HETATM 1106 O HOH A2258 10.890 42.763 33.683 1.00 60.41 O HETATM 1107 O HOH A2259 10.812 23.566 23.852 1.00 66.16 O HETATM 1108 O HOH A2260 29.142 17.626 43.175 1.00 65.64 O HETATM 1109 O HOH A2261 14.690 39.044 17.614 1.00 55.20 O HETATM 1110 O HOH A2262 7.755 36.639 22.300 1.00 63.75 O HETATM 1111 O HOH A2263 28.023 39.630 23.894 1.00 38.42 O HETATM 1112 O HOH A2264 31.291 32.548 28.179 1.00 39.57 O HETATM 1113 O HOH A2265 7.710 35.879 29.470 1.00 64.07 O HETATM 1114 O HOH A2266 12.475 25.049 20.614 1.00 40.83 O HETATM 1115 O HOH A2267 29.216 39.882 30.823 1.00 59.62 O HETATM 1116 O HOH A2268 29.100 15.241 42.789 1.00 70.21 O HETATM 1117 O HOH A2269 29.625 30.384 36.525 1.00 54.53 O HETATM 1118 O HOH A2270 7.118 25.059 35.069 1.00 65.33 O HETATM 1119 O HOH A2271 16.456 14.101 27.313 1.00 60.88 O HETATM 1120 O HOH A2272 28.758 38.536 26.481 1.00 36.58 O HETATM 1121 O HOH A2273 10.195 37.446 30.001 1.00 57.94 O HETATM 1122 O HOH A2274 21.800 38.877 16.911 1.00 52.07 O HETATM 1123 O HOH A2275 9.491 50.450 17.427 1.00 86.01 O HETATM 1124 O HOH A2276 20.076 34.818 43.216 1.00 50.07 O HETATM 1125 O HOH A2277 16.900 38.779 18.674 1.00 31.54 O HETATM 1126 O HOH A2278 7.894 41.742 25.074 1.00 66.47 O HETATM 1127 O HOH A2279 25.305 35.441 18.277 1.00 48.08 O HETATM 1128 O HOH A2280 7.800 21.036 30.423 1.00 64.81 O HETATM 1129 O HOH A2281 21.653 34.171 16.651 1.00 48.37 O HETATM 1130 O HOH A2282 20.244 42.635 17.735 1.00 46.62 O HETATM 1131 O HOH A2283 11.752 22.435 19.955 1.00 65.41 O HETATM 1132 O HOH A2284 20.559 31.791 14.804 1.00 52.42 O HETATM 1133 O HOH A2285 31.357 30.944 19.502 1.00 73.84 O HETATM 1134 O HOH A2286 31.488 27.805 37.136 1.00 70.00 O HETATM 1135 O HOH A2287 9.441 39.493 35.767 1.00 43.24 O HETATM 1136 O HOH A2288 14.953 35.680 16.457 1.00 61.80 O HETATM 1137 O HOH A2289 31.385 28.843 15.702 1.00 62.07 O HETATM 1138 O HOH A2290 10.100 27.213 20.934 1.00 50.44 O HETATM 1139 O HOH A2291 8.059 28.482 23.965 1.00 60.30 O HETATM 1140 O HOH A2292 10.762 17.641 27.507 1.00 80.23 O HETATM 1141 O HOH A2293 11.924 15.692 28.792 1.00 70.69 O HETATM 1142 O HOH A2294 18.921 40.246 17.370 1.00 42.89 O HETATM 1143 O HOH A2295 9.972 25.960 16.266 1.00 72.50 O HETATM 1144 O HOH A2296 12.726 36.984 17.191 1.00 76.11 O HETATM 1145 O HOH A2297 9.126 39.098 31.376 1.00 70.64 O HETATM 1146 O HOH A2298 7.301 29.911 25.609 1.00 49.19 O HETATM 1147 O HOH A2299 49.616 8.384 24.317 1.00 54.38 O HETATM 1148 O HOH A2300 31.330 24.513 46.256 1.00 75.44 O HETATM 1149 O HOH A2301 6.549 34.252 25.356 1.00 70.43 O HETATM 1150 O HOH A2302 6.652 27.924 21.650 1.00 72.72 O HETATM 1151 O HOH A2303 5.145 30.689 23.199 1.00 72.10 O HETATM 1152 O HOH A2304 5.971 30.462 20.486 1.00 64.45 O CONECT 945 946 947 CONECT 946 945 CONECT 947 945 948 CONECT 948 947 MASTER 333 0 1 6 0 0 1 6 1138 1 4 11 END