data_5PBR # _entry.id 5PBR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5PBR pdb_00005pbr 10.2210/pdb5pbr/pdb WWPDB D_1001400463 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-03-22 2 'Structure model' 1 1 2017-09-27 3 'Structure model' 1 2 2017-10-04 4 'Structure model' 1 3 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Structure summary' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' diffrn_source 4 2 'Structure model' pdbx_deposit_group 5 3 'Structure model' pdbx_deposit_group 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 9 4 'Structure model' pdbx_struct_special_symmetry # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation_author.name' 8 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 9 2 'Structure model' '_pdbx_deposit_group.group_title' 10 2 'Structure model' '_pdbx_deposit_group.group_type' 11 3 'Structure model' '_pdbx_deposit_group.group_title' 12 4 'Structure model' '_database_2.pdbx_DOI' 13 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 5PBR _pdbx_database_status.status_code REL _pdbx_database_status.recvd_initial_deposition_date 2017-02-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pearce, N.M.' 1 'Krojer, T.' 2 'Talon, R.' 3 'Bradley, A.R.' 4 'Fairhead, M.' 5 'Sethi, R.' 6 'Wright, N.' 7 'MacLean, E.' 8 'Collins, P.' 9 'Brandao-Neto, J.' 10 'Douangamath, A.' 11 'Renjie, Z.' 12 'Dias, A.' 13 'Vollmar, M.' 14 'Ng, J.' 15 'Brennan, P.E.' 16 'Cox, O.' 17 'Bountra, C.' 18 'Arrowsmith, C.H.' 19 'Edwards, A.' 20 'von Delft, F.' 21 # _citation.id primary _citation.title 'A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density.' _citation.journal_abbrev 'Nat Commun' _citation.journal_volume 8 _citation.page_first 15123 _citation.page_last 15123 _citation.year 2017 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2041-1723 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 28436492 _citation.pdbx_database_id_DOI 10.1038/ncomms15123 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pearce, N.M.' 1 ? primary 'Krojer, T.' 2 ? primary 'Bradley, A.R.' 3 ? primary 'Collins, P.' 4 ? primary 'Nowak, R.P.' 5 ? primary 'Talon, R.' 6 ? primary 'Marsden, B.D.' 7 ? primary 'Kelm, S.' 8 ? primary 'Shi, J.' 9 ? primary 'Deane, C.M.' 10 ? primary 'von Delft, F.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain adjacent to zinc finger domain protein 2B' 16090.326 1 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 water nat water 18.015 204 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name hWALp4 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHSSGVDLGTENLYFQSMSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTI REKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKVS ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGVDLGTENLYFQSMSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTI REKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKVS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 VAL n 1 12 ASP n 1 13 LEU n 1 14 GLY n 1 15 THR n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 PHE n 1 21 GLN n 1 22 SER n 1 23 MET n 1 24 SER n 1 25 VAL n 1 26 LYS n 1 27 LYS n 1 28 PRO n 1 29 LYS n 1 30 ARG n 1 31 ASP n 1 32 ASP n 1 33 SER n 1 34 LYS n 1 35 ASP n 1 36 LEU n 1 37 ALA n 1 38 LEU n 1 39 CYS n 1 40 SER n 1 41 MET n 1 42 ILE n 1 43 LEU n 1 44 THR n 1 45 GLU n 1 46 MET n 1 47 GLU n 1 48 THR n 1 49 HIS n 1 50 GLU n 1 51 ASP n 1 52 ALA n 1 53 TRP n 1 54 PRO n 1 55 PHE n 1 56 LEU n 1 57 LEU n 1 58 PRO n 1 59 VAL n 1 60 ASN n 1 61 LEU n 1 62 LYS n 1 63 LEU n 1 64 VAL n 1 65 PRO n 1 66 GLY n 1 67 TYR n 1 68 LYS n 1 69 LYS n 1 70 VAL n 1 71 ILE n 1 72 LYS n 1 73 LYS n 1 74 PRO n 1 75 MET n 1 76 ASP n 1 77 PHE n 1 78 SER n 1 79 THR n 1 80 ILE n 1 81 ARG n 1 82 GLU n 1 83 LYS n 1 84 LEU n 1 85 SER n 1 86 SER n 1 87 GLY n 1 88 GLN n 1 89 TYR n 1 90 PRO n 1 91 ASN n 1 92 LEU n 1 93 GLU n 1 94 THR n 1 95 PHE n 1 96 ALA n 1 97 LEU n 1 98 ASP n 1 99 VAL n 1 100 ARG n 1 101 LEU n 1 102 VAL n 1 103 PHE n 1 104 ASP n 1 105 ASN n 1 106 CYS n 1 107 GLU n 1 108 THR n 1 109 PHE n 1 110 ASN n 1 111 GLU n 1 112 ASP n 1 113 ASP n 1 114 SER n 1 115 ASP n 1 116 ILE n 1 117 GLY n 1 118 ARG n 1 119 ALA n 1 120 GLY n 1 121 HIS n 1 122 ASN n 1 123 MET n 1 124 ARG n 1 125 LYS n 1 126 TYR n 1 127 PHE n 1 128 GLU n 1 129 LYS n 1 130 LYS n 1 131 TRP n 1 132 THR n 1 133 ASP n 1 134 THR n 1 135 PHE n 1 136 LYS n 1 137 VAL n 1 138 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 138 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BAZ2B, KIAA1476' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1835 ? ? ? A . n A 1 2 HIS 2 1836 ? ? ? A . n A 1 3 HIS 3 1837 ? ? ? A . n A 1 4 HIS 4 1838 ? ? ? A . n A 1 5 HIS 5 1839 ? ? ? A . n A 1 6 HIS 6 1840 ? ? ? A . n A 1 7 HIS 7 1841 ? ? ? A . n A 1 8 SER 8 1842 ? ? ? A . n A 1 9 SER 9 1843 ? ? ? A . n A 1 10 GLY 10 1844 ? ? ? A . n A 1 11 VAL 11 1845 ? ? ? A . n A 1 12 ASP 12 1846 ? ? ? A . n A 1 13 LEU 13 1847 ? ? ? A . n A 1 14 GLY 14 1848 ? ? ? A . n A 1 15 THR 15 1849 ? ? ? A . n A 1 16 GLU 16 1850 ? ? ? A . n A 1 17 ASN 17 1851 ? ? ? A . n A 1 18 LEU 18 1852 ? ? ? A . n A 1 19 TYR 19 1853 ? ? ? A . n A 1 20 PHE 20 1854 ? ? ? A . n A 1 21 GLN 21 1855 ? ? ? A . n A 1 22 SER 22 1856 1856 SER SER A . n A 1 23 MET 23 1857 1857 MET MET A . n A 1 24 SER 24 1858 1858 SER SER A . n A 1 25 VAL 25 1859 1859 VAL VAL A . n A 1 26 LYS 26 1860 1860 LYS LYS A . n A 1 27 LYS 27 1861 1861 LYS LYS A . n A 1 28 PRO 28 1862 1862 PRO PRO A . n A 1 29 LYS 29 1863 1863 LYS LYS A . n A 1 30 ARG 30 1864 1864 ARG ARG A . n A 1 31 ASP 31 1865 1865 ASP ASP A . n A 1 32 ASP 32 1866 1866 ASP ASP A . n A 1 33 SER 33 1867 1867 SER SER A . n A 1 34 LYS 34 1868 1868 LYS LYS A . n A 1 35 ASP 35 1869 1869 ASP ASP A . n A 1 36 LEU 36 1870 1870 LEU LEU A . n A 1 37 ALA 37 1871 1871 ALA ALA A . n A 1 38 LEU 38 1872 1872 LEU LEU A . n A 1 39 CYS 39 1873 1873 CYS CYS A . n A 1 40 SER 40 1874 1874 SER SER A . n A 1 41 MET 41 1875 1875 MET MET A . n A 1 42 ILE 42 1876 1876 ILE ILE A . n A 1 43 LEU 43 1877 1877 LEU LEU A . n A 1 44 THR 44 1878 1878 THR THR A . n A 1 45 GLU 45 1879 1879 GLU GLU A . n A 1 46 MET 46 1880 1880 MET MET A . n A 1 47 GLU 47 1881 1881 GLU GLU A . n A 1 48 THR 48 1882 1882 THR THR A . n A 1 49 HIS 49 1883 1883 HIS HIS A . n A 1 50 GLU 50 1884 1884 GLU GLU A . n A 1 51 ASP 51 1885 1885 ASP ASP A . n A 1 52 ALA 52 1886 1886 ALA ALA A . n A 1 53 TRP 53 1887 1887 TRP TRP A . n A 1 54 PRO 54 1888 1888 PRO PRO A . n A 1 55 PHE 55 1889 1889 PHE PHE A . n A 1 56 LEU 56 1890 1890 LEU LEU A . n A 1 57 LEU 57 1891 1891 LEU LEU A . n A 1 58 PRO 58 1892 1892 PRO PRO A . n A 1 59 VAL 59 1893 1893 VAL VAL A . n A 1 60 ASN 60 1894 1894 ASN ASN A . n A 1 61 LEU 61 1895 1895 LEU LEU A . n A 1 62 LYS 62 1896 1896 LYS LYS A . n A 1 63 LEU 63 1897 1897 LEU LEU A . n A 1 64 VAL 64 1898 1898 VAL VAL A . n A 1 65 PRO 65 1899 1899 PRO PRO A . n A 1 66 GLY 66 1900 1900 GLY GLY A . n A 1 67 TYR 67 1901 1901 TYR TYR A . n A 1 68 LYS 68 1902 1902 LYS LYS A . n A 1 69 LYS 69 1903 1903 LYS LYS A . n A 1 70 VAL 70 1904 1904 VAL VAL A . n A 1 71 ILE 71 1905 1905 ILE ILE A . n A 1 72 LYS 72 1906 1906 LYS LYS A . n A 1 73 LYS 73 1907 1907 LYS LYS A . n A 1 74 PRO 74 1908 1908 PRO PRO A . n A 1 75 MET 75 1909 1909 MET MET A . n A 1 76 ASP 76 1910 1910 ASP ASP A . n A 1 77 PHE 77 1911 1911 PHE PHE A . n A 1 78 SER 78 1912 1912 SER SER A . n A 1 79 THR 79 1913 1913 THR THR A . n A 1 80 ILE 80 1914 1914 ILE ILE A . n A 1 81 ARG 81 1915 1915 ARG ARG A . n A 1 82 GLU 82 1916 1916 GLU GLU A . n A 1 83 LYS 83 1917 1917 LYS LYS A . n A 1 84 LEU 84 1918 1918 LEU LEU A . n A 1 85 SER 85 1919 1919 SER SER A . n A 1 86 SER 86 1920 1920 SER SER A . n A 1 87 GLY 87 1921 1921 GLY GLY A . n A 1 88 GLN 88 1922 1922 GLN GLN A . n A 1 89 TYR 89 1923 1923 TYR TYR A . n A 1 90 PRO 90 1924 1924 PRO PRO A . n A 1 91 ASN 91 1925 1925 ASN ASN A . n A 1 92 LEU 92 1926 1926 LEU LEU A . n A 1 93 GLU 93 1927 1927 GLU GLU A . n A 1 94 THR 94 1928 1928 THR THR A . n A 1 95 PHE 95 1929 1929 PHE PHE A . n A 1 96 ALA 96 1930 1930 ALA ALA A . n A 1 97 LEU 97 1931 1931 LEU LEU A . n A 1 98 ASP 98 1932 1932 ASP ASP A . n A 1 99 VAL 99 1933 1933 VAL VAL A . n A 1 100 ARG 100 1934 1934 ARG ARG A . n A 1 101 LEU 101 1935 1935 LEU LEU A . n A 1 102 VAL 102 1936 1936 VAL VAL A . n A 1 103 PHE 103 1937 1937 PHE PHE A . n A 1 104 ASP 104 1938 1938 ASP ASP A . n A 1 105 ASN 105 1939 1939 ASN ASN A . n A 1 106 CYS 106 1940 1940 CYS CYS A . n A 1 107 GLU 107 1941 1941 GLU GLU A . n A 1 108 THR 108 1942 1942 THR THR A . n A 1 109 PHE 109 1943 1943 PHE PHE A . n A 1 110 ASN 110 1944 1944 ASN ASN A . n A 1 111 GLU 111 1945 1945 GLU GLU A . n A 1 112 ASP 112 1946 1946 ASP ASP A . n A 1 113 ASP 113 1947 1947 ASP ASP A . n A 1 114 SER 114 1948 1948 SER SER A . n A 1 115 ASP 115 1949 1949 ASP ASP A . n A 1 116 ILE 116 1950 1950 ILE ILE A . n A 1 117 GLY 117 1951 1951 GLY GLY A . n A 1 118 ARG 118 1952 1952 ARG ARG A . n A 1 119 ALA 119 1953 1953 ALA ALA A . n A 1 120 GLY 120 1954 1954 GLY GLY A . n A 1 121 HIS 121 1955 1955 HIS HIS A . n A 1 122 ASN 122 1956 1956 ASN ASN A . n A 1 123 MET 123 1957 1957 MET MET A . n A 1 124 ARG 124 1958 1958 ARG ARG A . n A 1 125 LYS 125 1959 1959 LYS LYS A . n A 1 126 TYR 126 1960 1960 TYR TYR A . n A 1 127 PHE 127 1961 1961 PHE PHE A . n A 1 128 GLU 128 1962 1962 GLU GLU A . n A 1 129 LYS 129 1963 1963 LYS LYS A . n A 1 130 LYS 130 1964 1964 LYS LYS A . n A 1 131 TRP 131 1965 1965 TRP TRP A . n A 1 132 THR 132 1966 1966 THR THR A . n A 1 133 ASP 133 1967 1967 ASP ASP A . n A 1 134 THR 134 1968 1968 THR THR A . n A 1 135 PHE 135 1969 1969 PHE PHE A . n A 1 136 LYS 136 1970 1970 LYS LYS A . n A 1 137 VAL 137 1971 ? ? ? A . n A 1 138 SER 138 1972 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 2001 1 EDO EDO A . C 3 HOH 1 2101 116 HOH HOH A . C 3 HOH 2 2102 196 HOH HOH A . C 3 HOH 3 2103 84 HOH HOH A . C 3 HOH 4 2104 92 HOH HOH A . C 3 HOH 5 2105 100 HOH HOH A . C 3 HOH 6 2106 120 HOH HOH A . C 3 HOH 7 2107 21 HOH HOH A . C 3 HOH 8 2108 154 HOH HOH A . C 3 HOH 9 2109 68 HOH HOH A . C 3 HOH 10 2110 107 HOH HOH A . C 3 HOH 11 2111 51 HOH HOH A . C 3 HOH 12 2112 44 HOH HOH A . C 3 HOH 13 2113 40 HOH HOH A . C 3 HOH 14 2114 28 HOH HOH A . C 3 HOH 15 2115 36 HOH HOH A . C 3 HOH 16 2116 13 HOH HOH A . C 3 HOH 17 2117 52 HOH HOH A . C 3 HOH 18 2118 38 HOH HOH A . C 3 HOH 19 2119 72 HOH HOH A . C 3 HOH 20 2120 5 HOH HOH A . C 3 HOH 21 2121 34 HOH HOH A . C 3 HOH 22 2122 47 HOH HOH A . C 3 HOH 23 2123 9 HOH HOH A . C 3 HOH 24 2124 163 HOH HOH A . C 3 HOH 25 2125 2 HOH HOH A . C 3 HOH 26 2126 76 HOH HOH A . C 3 HOH 27 2127 74 HOH HOH A . C 3 HOH 28 2128 14 HOH HOH A . C 3 HOH 29 2129 39 HOH HOH A . C 3 HOH 30 2130 7 HOH HOH A . C 3 HOH 31 2131 158 HOH HOH A . C 3 HOH 32 2132 149 HOH HOH A . C 3 HOH 33 2133 37 HOH HOH A . C 3 HOH 34 2134 70 HOH HOH A . C 3 HOH 35 2135 114 HOH HOH A . C 3 HOH 36 2136 6 HOH HOH A . C 3 HOH 37 2137 10 HOH HOH A . C 3 HOH 38 2138 48 HOH HOH A . C 3 HOH 39 2139 129 HOH HOH A . C 3 HOH 40 2140 59 HOH HOH A . C 3 HOH 41 2141 152 HOH HOH A . C 3 HOH 42 2142 23 HOH HOH A . C 3 HOH 43 2143 20 HOH HOH A . C 3 HOH 44 2144 62 HOH HOH A . C 3 HOH 45 2145 26 HOH HOH A . C 3 HOH 46 2146 167 HOH HOH A . C 3 HOH 47 2147 75 HOH HOH A . C 3 HOH 48 2148 46 HOH HOH A . C 3 HOH 49 2149 25 HOH HOH A . C 3 HOH 50 2150 30 HOH HOH A . C 3 HOH 51 2151 16 HOH HOH A . C 3 HOH 52 2152 77 HOH HOH A . C 3 HOH 53 2153 169 HOH HOH A . C 3 HOH 54 2154 174 HOH HOH A . C 3 HOH 55 2155 190 HOH HOH A . C 3 HOH 56 2156 173 HOH HOH A . C 3 HOH 57 2157 61 HOH HOH A . C 3 HOH 58 2158 32 HOH HOH A . C 3 HOH 59 2159 146 HOH HOH A . C 3 HOH 60 2160 93 HOH HOH A . C 3 HOH 61 2161 15 HOH HOH A . C 3 HOH 62 2162 90 HOH HOH A . C 3 HOH 63 2163 27 HOH HOH A . C 3 HOH 64 2164 73 HOH HOH A . C 3 HOH 65 2165 139 HOH HOH A . C 3 HOH 66 2166 170 HOH HOH A . C 3 HOH 67 2167 35 HOH HOH A . C 3 HOH 68 2168 193 HOH HOH A . C 3 HOH 69 2169 4 HOH HOH A . C 3 HOH 70 2170 45 HOH HOH A . C 3 HOH 71 2171 105 HOH HOH A . C 3 HOH 72 2172 88 HOH HOH A . C 3 HOH 73 2173 137 HOH HOH A . C 3 HOH 74 2174 41 HOH HOH A . C 3 HOH 75 2175 91 HOH HOH A . C 3 HOH 76 2176 166 HOH HOH A . C 3 HOH 77 2177 64 HOH HOH A . C 3 HOH 78 2178 19 HOH HOH A . C 3 HOH 79 2179 81 HOH HOH A . C 3 HOH 80 2180 56 HOH HOH A . C 3 HOH 81 2181 106 HOH HOH A . C 3 HOH 82 2182 80 HOH HOH A . C 3 HOH 83 2183 57 HOH HOH A . C 3 HOH 84 2184 17 HOH HOH A . C 3 HOH 85 2185 53 HOH HOH A . C 3 HOH 86 2186 50 HOH HOH A . C 3 HOH 87 2187 1 HOH HOH A . C 3 HOH 88 2188 200 HOH HOH A . C 3 HOH 89 2189 191 HOH HOH A . C 3 HOH 90 2190 182 HOH HOH A . C 3 HOH 91 2191 24 HOH HOH A . C 3 HOH 92 2192 63 HOH HOH A . C 3 HOH 93 2193 171 HOH HOH A . C 3 HOH 94 2194 148 HOH HOH A . C 3 HOH 95 2195 18 HOH HOH A . C 3 HOH 96 2196 65 HOH HOH A . C 3 HOH 97 2197 113 HOH HOH A . C 3 HOH 98 2198 168 HOH HOH A . C 3 HOH 99 2199 144 HOH HOH A . C 3 HOH 100 2200 54 HOH HOH A . C 3 HOH 101 2201 164 HOH HOH A . C 3 HOH 102 2202 12 HOH HOH A . C 3 HOH 103 2203 11 HOH HOH A . C 3 HOH 104 2204 145 HOH HOH A . C 3 HOH 105 2205 33 HOH HOH A . C 3 HOH 106 2206 8 HOH HOH A . C 3 HOH 107 2207 82 HOH HOH A . C 3 HOH 108 2208 172 HOH HOH A . C 3 HOH 109 2209 181 HOH HOH A . C 3 HOH 110 2210 117 HOH HOH A . C 3 HOH 111 2211 95 HOH HOH A . C 3 HOH 112 2212 66 HOH HOH A . C 3 HOH 113 2213 189 HOH HOH A . C 3 HOH 114 2214 188 HOH HOH A . C 3 HOH 115 2215 126 HOH HOH A . C 3 HOH 116 2216 103 HOH HOH A . C 3 HOH 117 2217 22 HOH HOH A . C 3 HOH 118 2218 101 HOH HOH A . C 3 HOH 119 2219 29 HOH HOH A . C 3 HOH 120 2220 83 HOH HOH A . C 3 HOH 121 2221 156 HOH HOH A . C 3 HOH 122 2222 3 HOH HOH A . C 3 HOH 123 2223 147 HOH HOH A . C 3 HOH 124 2224 85 HOH HOH A . C 3 HOH 125 2225 138 HOH HOH A . C 3 HOH 126 2226 69 HOH HOH A . C 3 HOH 127 2227 143 HOH HOH A . C 3 HOH 128 2228 98 HOH HOH A . C 3 HOH 129 2229 157 HOH HOH A . C 3 HOH 130 2230 124 HOH HOH A . C 3 HOH 131 2231 99 HOH HOH A . C 3 HOH 132 2232 153 HOH HOH A . C 3 HOH 133 2233 192 HOH HOH A . C 3 HOH 134 2234 130 HOH HOH A . C 3 HOH 135 2235 108 HOH HOH A . C 3 HOH 136 2236 185 HOH HOH A . C 3 HOH 137 2237 141 HOH HOH A . C 3 HOH 138 2238 132 HOH HOH A . C 3 HOH 139 2239 97 HOH HOH A . C 3 HOH 140 2240 194 HOH HOH A . C 3 HOH 141 2241 127 HOH HOH A . C 3 HOH 142 2242 112 HOH HOH A . C 3 HOH 143 2243 162 HOH HOH A . C 3 HOH 144 2244 43 HOH HOH A . C 3 HOH 145 2245 176 HOH HOH A . C 3 HOH 146 2246 49 HOH HOH A . C 3 HOH 147 2247 31 HOH HOH A . C 3 HOH 148 2248 183 HOH HOH A . C 3 HOH 149 2249 135 HOH HOH A . C 3 HOH 150 2250 96 HOH HOH A . C 3 HOH 151 2251 102 HOH HOH A . C 3 HOH 152 2252 60 HOH HOH A . C 3 HOH 153 2253 119 HOH HOH A . C 3 HOH 154 2254 151 HOH HOH A . C 3 HOH 155 2255 187 HOH HOH A . C 3 HOH 156 2256 161 HOH HOH A . C 3 HOH 157 2257 123 HOH HOH A . C 3 HOH 158 2258 195 HOH HOH A . C 3 HOH 159 2259 94 HOH HOH A . C 3 HOH 160 2260 178 HOH HOH A . C 3 HOH 161 2261 128 HOH HOH A . C 3 HOH 162 2262 58 HOH HOH A . C 3 HOH 163 2263 121 HOH HOH A . C 3 HOH 164 2264 202 HOH HOH A . C 3 HOH 165 2265 110 HOH HOH A . C 3 HOH 166 2266 201 HOH HOH A . C 3 HOH 167 2267 155 HOH HOH A . C 3 HOH 168 2268 86 HOH HOH A . C 3 HOH 169 2269 150 HOH HOH A . C 3 HOH 170 2270 134 HOH HOH A . C 3 HOH 171 2271 104 HOH HOH A . C 3 HOH 172 2272 79 HOH HOH A . C 3 HOH 173 2273 115 HOH HOH A . C 3 HOH 174 2274 71 HOH HOH A . C 3 HOH 175 2275 55 HOH HOH A . C 3 HOH 176 2276 78 HOH HOH A . C 3 HOH 177 2277 199 HOH HOH A . C 3 HOH 178 2278 89 HOH HOH A . C 3 HOH 179 2279 180 HOH HOH A . C 3 HOH 180 2280 177 HOH HOH A . C 3 HOH 181 2281 118 HOH HOH A . C 3 HOH 182 2282 160 HOH HOH A . C 3 HOH 183 2283 42 HOH HOH A . C 3 HOH 184 2284 159 HOH HOH A . C 3 HOH 185 2285 87 HOH HOH A . C 3 HOH 186 2286 198 HOH HOH A . C 3 HOH 187 2287 109 HOH HOH A . C 3 HOH 188 2288 136 HOH HOH A . C 3 HOH 189 2289 111 HOH HOH A . C 3 HOH 190 2290 165 HOH HOH A . C 3 HOH 191 2291 184 HOH HOH A . C 3 HOH 192 2292 179 HOH HOH A . C 3 HOH 193 2293 197 HOH HOH A . C 3 HOH 194 2294 204 HOH HOH A . C 3 HOH 195 2295 67 HOH HOH A . C 3 HOH 196 2296 131 HOH HOH A . C 3 HOH 197 2297 140 HOH HOH A . C 3 HOH 198 2298 186 HOH HOH A . C 3 HOH 199 2299 122 HOH HOH A . C 3 HOH 200 2300 142 HOH HOH A . C 3 HOH 201 2301 175 HOH HOH A . C 3 HOH 202 2302 203 HOH HOH A . C 3 HOH 203 2303 133 HOH HOH A . C 3 HOH 204 2304 125 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 1863 ? CG ? A LYS 29 CG 2 1 Y 1 A LYS 1863 ? CD ? A LYS 29 CD 3 1 Y 1 A LYS 1863 ? CE ? A LYS 29 CE 4 1 Y 1 A LYS 1863 ? NZ ? A LYS 29 NZ 5 1 Y 1 A LYS 1868 ? CE ? A LYS 34 CE 6 1 Y 1 A LYS 1868 ? NZ ? A LYS 34 NZ 7 1 Y 1 A LYS 1970 ? CG ? A LYS 136 CG 8 1 Y 1 A LYS 1970 ? CD ? A LYS 136 CD 9 1 Y 1 A LYS 1970 ? CE ? A LYS 136 CE 10 1 Y 1 A LYS 1970 ? NZ ? A LYS 136 NZ # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.8.0131 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 Aimless 0.1.29 21/08/12 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 PDB_EXTRACT 3.23 'SEP. 23, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? program ? ? 'data reduction' ? ? ? 5 REFMAC . ? program ? ? phasing ? ? ? # _cell.entry_id 5PBR _cell.length_a 82.323 _cell.length_b 96.598 _cell.length_c 57.962 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PBR _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # _exptl.crystals_number 1 _exptl.entry_id 5PBR _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.150 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 3.58 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 65.65 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '30% PEG600 -- 0.1M MES pH 6.0' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? # _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.pdbx_collection_date 2013-03-10 _diffrn_detector.diffrn_id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9200 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_wavelength_list 0.9200 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5PBR _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 28.980 _reflns.d_resolution_high 1.810 _reflns.number_obs 21531 _reflns.number_all ? _reflns.percent_possible_obs 99.500 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.600 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.600 _reflns.pdbx_Rrim_I_all 0.052 _reflns.pdbx_Rpim_I_all 0.020 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 141795 _reflns.pdbx_scaling_rejects 0 _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.810 1.840 ? 7229 ? ? 0.732 ? ? ? 6.100 ? 2.400 ? 1188 ? ? ? ? 93.100 0.799 0.314 0.855 1 2 9.030 28.980 ? 1221 ? ? 0.022 ? ? ? 6.100 ? 85.400 ? 201 ? ? ? ? 97.100 0.024 0.009 1.000 # _refine.entry_id 5PBR _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.8100 _refine.ls_d_res_low 28.980 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.4000 _refine.ls_number_reflns_obs 20440 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1801 _refine.ls_R_factor_R_work 0.1789 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2022 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 1076 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 33.1810 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 3.0500 _refine.aniso_B[2][2] -1.0800 _refine.aniso_B[3][3] -1.9700 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9630 _refine.correlation_coeff_Fo_to_Fc_free 0.9540 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0890 _refine.pdbx_overall_ESU_R_Free 0.0880 _refine.overall_SU_ML 0.0680 _refine.overall_SU_B 2.2820 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3G0L _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 94.170 _refine.B_iso_min 16.420 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8100 _refine_hist.d_res_low 28.980 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 204 _refine_hist.number_atoms_total 1138 _refine_hist.pdbx_number_residues_total 115 _refine_hist.pdbx_B_iso_mean_ligand 40.95 _refine_hist.pdbx_B_iso_mean_solvent 47.44 _refine_hist.pdbx_number_atoms_protein 930 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 968 0.024 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 916 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1305 2.010 1.975 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2126 1.109 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 116 6.024 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 45 35.456 24.667 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 181 12.699 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 5 21.947 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 142 0.115 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1064 0.011 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 209 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 464 3.569 2.902 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 463 3.570 2.892 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 580 4.795 4.323 ? ? # _refine_ls_shell.d_res_high 1.8050 _refine_ls_shell.d_res_low 1.8520 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 94.2600 _refine_ls_shell.number_reflns_R_work 1395 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2850 _refine_ls_shell.R_factor_R_free 0.3030 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 84 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1479 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 5PBR _struct.title 'PanDDA analysis group deposition -- Crystal Structure of BAZ2B after initial refinement with no ligand modelled (structure 12)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5PBR _struct_keywords.text 'PanDDA, SGC - Diamond I04-1 fragment screening, bromodomain, epigenetics, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BAZ2B_HUMAN _struct_ref.pdbx_db_accession Q9UIF8 _struct_ref.pdbx_db_isoform Q9UIF8-2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVF DNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKVS ; _struct_ref.pdbx_align_begin 1954 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5PBR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 24 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 138 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UIF8 _struct_ref_seq.db_align_beg 1954 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 2068 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1858 _struct_ref_seq.pdbx_auth_seq_align_end 1972 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5PBR MET A 1 ? UNP Q9UIF8 ? ? 'expression tag' 1835 1 1 5PBR HIS A 2 ? UNP Q9UIF8 ? ? 'expression tag' 1836 2 1 5PBR HIS A 3 ? UNP Q9UIF8 ? ? 'expression tag' 1837 3 1 5PBR HIS A 4 ? UNP Q9UIF8 ? ? 'expression tag' 1838 4 1 5PBR HIS A 5 ? UNP Q9UIF8 ? ? 'expression tag' 1839 5 1 5PBR HIS A 6 ? UNP Q9UIF8 ? ? 'expression tag' 1840 6 1 5PBR HIS A 7 ? UNP Q9UIF8 ? ? 'expression tag' 1841 7 1 5PBR SER A 8 ? UNP Q9UIF8 ? ? 'expression tag' 1842 8 1 5PBR SER A 9 ? UNP Q9UIF8 ? ? 'expression tag' 1843 9 1 5PBR GLY A 10 ? UNP Q9UIF8 ? ? 'expression tag' 1844 10 1 5PBR VAL A 11 ? UNP Q9UIF8 ? ? 'expression tag' 1845 11 1 5PBR ASP A 12 ? UNP Q9UIF8 ? ? 'expression tag' 1846 12 1 5PBR LEU A 13 ? UNP Q9UIF8 ? ? 'expression tag' 1847 13 1 5PBR GLY A 14 ? UNP Q9UIF8 ? ? 'expression tag' 1848 14 1 5PBR THR A 15 ? UNP Q9UIF8 ? ? 'expression tag' 1849 15 1 5PBR GLU A 16 ? UNP Q9UIF8 ? ? 'expression tag' 1850 16 1 5PBR ASN A 17 ? UNP Q9UIF8 ? ? 'expression tag' 1851 17 1 5PBR LEU A 18 ? UNP Q9UIF8 ? ? 'expression tag' 1852 18 1 5PBR TYR A 19 ? UNP Q9UIF8 ? ? 'expression tag' 1853 19 1 5PBR PHE A 20 ? UNP Q9UIF8 ? ? 'expression tag' 1854 20 1 5PBR GLN A 21 ? UNP Q9UIF8 ? ? 'expression tag' 1855 21 1 5PBR SER A 22 ? UNP Q9UIF8 ? ? 'expression tag' 1856 22 1 5PBR MET A 23 ? UNP Q9UIF8 ? ? 'expression tag' 1857 23 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 34 ? HIS A 49 ? LYS A 1868 HIS A 1883 1 ? 16 HELX_P HELX_P2 AA2 GLU A 50 ? LEU A 56 ? GLU A 1884 LEU A 1890 5 ? 7 HELX_P HELX_P3 AA3 GLY A 66 ? ILE A 71 ? GLY A 1900 ILE A 1905 1 ? 6 HELX_P HELX_P4 AA4 ASP A 76 ? SER A 86 ? ASP A 1910 SER A 1920 1 ? 11 HELX_P HELX_P5 AA5 ASN A 91 ? ASN A 110 ? ASN A 1925 ASN A 1944 1 ? 20 HELX_P HELX_P6 AA6 SER A 114 ? LYS A 136 ? SER A 1948 LYS A 1970 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id EDO _struct_site.pdbx_auth_seq_id 2001 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'binding site for residue EDO A 2001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASN A 110 ? ASN A 1944 . ? 1_555 ? 2 AC1 3 HOH C . ? HOH A 2118 . ? 1_555 ? 3 AC1 3 HOH C . ? HOH A 2139 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2214 ? ? O A HOH 2256 ? ? 2.11 2 1 OE1 A GLU 1945 ? A O A HOH 2101 ? ? 2.13 3 1 O A HOH 2290 ? ? O A HOH 2297 ? ? 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MET _pdbx_validate_rmsd_bond.auth_seq_id_1 1880 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MET _pdbx_validate_rmsd_bond.auth_seq_id_2 1880 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.713 _pdbx_validate_rmsd_bond.bond_target_value 1.509 _pdbx_validate_rmsd_bond.bond_deviation 0.204 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.032 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 1947 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -96.74 _pdbx_validate_torsion.psi 56.60 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2146 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _phasing.method MR # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2300 ? . 5.96 2 1 O ? A HOH 2301 ? 5.97 . 3 1 O ? A HOH 2302 ? 6.87 . 4 1 O ? A HOH 2303 ? 7.44 . 5 1 O ? A HOH 2304 ? 7.82 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1835 ? A MET 1 2 1 Y 1 A HIS 1836 ? A HIS 2 3 1 Y 1 A HIS 1837 ? A HIS 3 4 1 Y 1 A HIS 1838 ? A HIS 4 5 1 Y 1 A HIS 1839 ? A HIS 5 6 1 Y 1 A HIS 1840 ? A HIS 6 7 1 Y 1 A HIS 1841 ? A HIS 7 8 1 Y 1 A SER 1842 ? A SER 8 9 1 Y 1 A SER 1843 ? A SER 9 10 1 Y 1 A GLY 1844 ? A GLY 10 11 1 Y 1 A VAL 1845 ? A VAL 11 12 1 Y 1 A ASP 1846 ? A ASP 12 13 1 Y 1 A LEU 1847 ? A LEU 13 14 1 Y 1 A GLY 1848 ? A GLY 14 15 1 Y 1 A THR 1849 ? A THR 15 16 1 Y 1 A GLU 1850 ? A GLU 16 17 1 Y 1 A ASN 1851 ? A ASN 17 18 1 Y 1 A LEU 1852 ? A LEU 18 19 1 Y 1 A TYR 1853 ? A TYR 19 20 1 Y 1 A PHE 1854 ? A PHE 20 21 1 Y 1 A GLN 1855 ? A GLN 21 22 1 Y 1 A VAL 1971 ? A VAL 137 23 1 Y 1 A SER 1972 ? A SER 138 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 PRO N N N N 283 PRO CA C N S 284 PRO C C N N 285 PRO O O N N 286 PRO CB C N N 287 PRO CG C N N 288 PRO CD C N N 289 PRO OXT O N N 290 PRO H H N N 291 PRO HA H N N 292 PRO HB2 H N N 293 PRO HB3 H N N 294 PRO HG2 H N N 295 PRO HG3 H N N 296 PRO HD2 H N N 297 PRO HD3 H N N 298 PRO HXT H N N 299 SER N N N N 300 SER CA C N S 301 SER C C N N 302 SER O O N N 303 SER CB C N N 304 SER OG O N N 305 SER OXT O N N 306 SER H H N N 307 SER H2 H N N 308 SER HA H N N 309 SER HB2 H N N 310 SER HB3 H N N 311 SER HG H N N 312 SER HXT H N N 313 THR N N N N 314 THR CA C N S 315 THR C C N N 316 THR O O N N 317 THR CB C N R 318 THR OG1 O N N 319 THR CG2 C N N 320 THR OXT O N N 321 THR H H N N 322 THR H2 H N N 323 THR HA H N N 324 THR HB H N N 325 THR HG1 H N N 326 THR HG21 H N N 327 THR HG22 H N N 328 THR HG23 H N N 329 THR HXT H N N 330 TRP N N N N 331 TRP CA C N S 332 TRP C C N N 333 TRP O O N N 334 TRP CB C N N 335 TRP CG C Y N 336 TRP CD1 C Y N 337 TRP CD2 C Y N 338 TRP NE1 N Y N 339 TRP CE2 C Y N 340 TRP CE3 C Y N 341 TRP CZ2 C Y N 342 TRP CZ3 C Y N 343 TRP CH2 C Y N 344 TRP OXT O N N 345 TRP H H N N 346 TRP H2 H N N 347 TRP HA H N N 348 TRP HB2 H N N 349 TRP HB3 H N N 350 TRP HD1 H N N 351 TRP HE1 H N N 352 TRP HE3 H N N 353 TRP HZ2 H N N 354 TRP HZ3 H N N 355 TRP HH2 H N N 356 TRP HXT H N N 357 TYR N N N N 358 TYR CA C N S 359 TYR C C N N 360 TYR O O N N 361 TYR CB C N N 362 TYR CG C Y N 363 TYR CD1 C Y N 364 TYR CD2 C Y N 365 TYR CE1 C Y N 366 TYR CE2 C Y N 367 TYR CZ C Y N 368 TYR OH O N N 369 TYR OXT O N N 370 TYR H H N N 371 TYR H2 H N N 372 TYR HA H N N 373 TYR HB2 H N N 374 TYR HB3 H N N 375 TYR HD1 H N N 376 TYR HD2 H N N 377 TYR HE1 H N N 378 TYR HE2 H N N 379 TYR HH H N N 380 TYR HXT H N N 381 VAL N N N N 382 VAL CA C N S 383 VAL C C N N 384 VAL O O N N 385 VAL CB C N N 386 VAL CG1 C N N 387 VAL CG2 C N N 388 VAL OXT O N N 389 VAL H H N N 390 VAL H2 H N N 391 VAL HA H N N 392 VAL HB H N N 393 VAL HG11 H N N 394 VAL HG12 H N N 395 VAL HG13 H N N 396 VAL HG21 H N N 397 VAL HG22 H N N 398 VAL HG23 H N N 399 VAL HXT H N N 400 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 PHE N CA sing N N 246 PHE N H sing N N 247 PHE N H2 sing N N 248 PHE CA C sing N N 249 PHE CA CB sing N N 250 PHE CA HA sing N N 251 PHE C O doub N N 252 PHE C OXT sing N N 253 PHE CB CG sing N N 254 PHE CB HB2 sing N N 255 PHE CB HB3 sing N N 256 PHE CG CD1 doub Y N 257 PHE CG CD2 sing Y N 258 PHE CD1 CE1 sing Y N 259 PHE CD1 HD1 sing N N 260 PHE CD2 CE2 doub Y N 261 PHE CD2 HD2 sing N N 262 PHE CE1 CZ doub Y N 263 PHE CE1 HE1 sing N N 264 PHE CE2 CZ sing Y N 265 PHE CE2 HE2 sing N N 266 PHE CZ HZ sing N N 267 PHE OXT HXT sing N N 268 PRO N CA sing N N 269 PRO N CD sing N N 270 PRO N H sing N N 271 PRO CA C sing N N 272 PRO CA CB sing N N 273 PRO CA HA sing N N 274 PRO C O doub N N 275 PRO C OXT sing N N 276 PRO CB CG sing N N 277 PRO CB HB2 sing N N 278 PRO CB HB3 sing N N 279 PRO CG CD sing N N 280 PRO CG HG2 sing N N 281 PRO CG HG3 sing N N 282 PRO CD HD2 sing N N 283 PRO CD HD3 sing N N 284 PRO OXT HXT sing N N 285 SER N CA sing N N 286 SER N H sing N N 287 SER N H2 sing N N 288 SER CA C sing N N 289 SER CA CB sing N N 290 SER CA HA sing N N 291 SER C O doub N N 292 SER C OXT sing N N 293 SER CB OG sing N N 294 SER CB HB2 sing N N 295 SER CB HB3 sing N N 296 SER OG HG sing N N 297 SER OXT HXT sing N N 298 THR N CA sing N N 299 THR N H sing N N 300 THR N H2 sing N N 301 THR CA C sing N N 302 THR CA CB sing N N 303 THR CA HA sing N N 304 THR C O doub N N 305 THR C OXT sing N N 306 THR CB OG1 sing N N 307 THR CB CG2 sing N N 308 THR CB HB sing N N 309 THR OG1 HG1 sing N N 310 THR CG2 HG21 sing N N 311 THR CG2 HG22 sing N N 312 THR CG2 HG23 sing N N 313 THR OXT HXT sing N N 314 TRP N CA sing N N 315 TRP N H sing N N 316 TRP N H2 sing N N 317 TRP CA C sing N N 318 TRP CA CB sing N N 319 TRP CA HA sing N N 320 TRP C O doub N N 321 TRP C OXT sing N N 322 TRP CB CG sing N N 323 TRP CB HB2 sing N N 324 TRP CB HB3 sing N N 325 TRP CG CD1 doub Y N 326 TRP CG CD2 sing Y N 327 TRP CD1 NE1 sing Y N 328 TRP CD1 HD1 sing N N 329 TRP CD2 CE2 doub Y N 330 TRP CD2 CE3 sing Y N 331 TRP NE1 CE2 sing Y N 332 TRP NE1 HE1 sing N N 333 TRP CE2 CZ2 sing Y N 334 TRP CE3 CZ3 doub Y N 335 TRP CE3 HE3 sing N N 336 TRP CZ2 CH2 doub Y N 337 TRP CZ2 HZ2 sing N N 338 TRP CZ3 CH2 sing Y N 339 TRP CZ3 HZ3 sing N N 340 TRP CH2 HH2 sing N N 341 TRP OXT HXT sing N N 342 TYR N CA sing N N 343 TYR N H sing N N 344 TYR N H2 sing N N 345 TYR CA C sing N N 346 TYR CA CB sing N N 347 TYR CA HA sing N N 348 TYR C O doub N N 349 TYR C OXT sing N N 350 TYR CB CG sing N N 351 TYR CB HB2 sing N N 352 TYR CB HB3 sing N N 353 TYR CG CD1 doub Y N 354 TYR CG CD2 sing Y N 355 TYR CD1 CE1 sing Y N 356 TYR CD1 HD1 sing N N 357 TYR CD2 CE2 doub Y N 358 TYR CD2 HD2 sing N N 359 TYR CE1 CZ doub Y N 360 TYR CE1 HE1 sing N N 361 TYR CE2 CZ sing Y N 362 TYR CE2 HE2 sing N N 363 TYR CZ OH sing N N 364 TYR OH HH sing N N 365 TYR OXT HXT sing N N 366 VAL N CA sing N N 367 VAL N H sing N N 368 VAL N H2 sing N N 369 VAL CA C sing N N 370 VAL CA CB sing N N 371 VAL CA HA sing N N 372 VAL C O doub N N 373 VAL C OXT sing N N 374 VAL CB CG1 sing N N 375 VAL CB CG2 sing N N 376 VAL CB HB sing N N 377 VAL CG1 HG11 sing N N 378 VAL CG1 HG12 sing N N 379 VAL CG1 HG13 sing N N 380 VAL CG2 HG21 sing N N 381 VAL CG2 HG22 sing N N 382 VAL CG2 HG23 sing N N 383 VAL OXT HXT sing N N 384 # _pdbx_deposit_group.group_id G_1002019 _pdbx_deposit_group.group_description ;bromodomain of human BAZ2B screened against the ZENOBIA Fragment Library by X-ray Crystallography at the XChem facility of Diamond Light Source beamline I04-1. Check out the PanDDA event maps at https://zenodo.org/record/290199/files/0_index.html ; _pdbx_deposit_group.group_title 'PanDDA analysis group deposition of models of ground state datasets' _pdbx_deposit_group.group_type 'ground state' # _atom_sites.entry_id 5PBR _atom_sites.fract_transf_matrix[1][1] 0.012147 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010352 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017253 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_