HEADER GENE REGULATION 07-FEB-17 5PON TITLE PANDDA ANALYSIS GROUP DEPOSITION -- CRYSTAL STRUCTURE OF BRD1 IN TITLE 2 COMPLEX WITH N10980A COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BR140-LIKE PROTEIN,BROMODOMAIN AND PHD FINGER-CONTAINING COMPND 5 PROTEIN 2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD1, BRL, BRPF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PANDDA, SGC - DIAMOND I04-1 FRAGMENT SCREENING, BROMODOMAIN, KEYWDS 2 EPIGENETICS, XCHEMEXPLORER, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR N.M.PEARCE,T.KROJER,R.TALON,A.R.BRADLEY,M.FAIRHEAD,R.SETHI,N.WRIGHT, AUTHOR 2 E.MACLEAN,P.COLLINS,J.BRANDAO-NETO,A.DOUANGAMATH,Z.RENJIE,A.DIAS, AUTHOR 3 J.NG,P.E.BRENNAN,O.COX,C.BOUNTRA,C.H.ARROWSMITH,A.EDWARDS,F.VON AUTHOR 4 DELFT REVDAT 4 06-MAR-24 5PON 1 LINK REVDAT 3 04-OCT-17 5PON 1 REMARK REVDAT 2 27-SEP-17 5PON 1 JRNL REMARK REVDAT 1 15-MAR-17 5PON 0 JRNL AUTH N.M.PEARCE,T.KROJER,A.R.BRADLEY,P.COLLINS,R.P.NOWAK,R.TALON, JRNL AUTH 2 B.D.MARSDEN,S.KELM,J.SHI,C.M.DEANE,F.VON DELFT JRNL TITL A MULTI-CRYSTAL METHOD FOR EXTRACTING OBSCURED JRNL TITL 2 CRYSTALLOGRAPHIC STATES FROM CONVENTIONALLY UNINTERPRETABLE JRNL TITL 3 ELECTRON DENSITY. JRNL REF NAT COMMUN V. 8 15123 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28436492 JRNL DOI 10.1038/NCOMMS15123 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1682 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 50270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0819 - 3.9781 0.99 2832 151 0.1672 0.1857 REMARK 3 2 3.9781 - 3.1587 0.99 2720 139 0.1772 0.1772 REMARK 3 3 3.1587 - 2.7598 1.00 2721 150 0.1940 0.2110 REMARK 3 4 2.7598 - 2.5076 1.00 2730 116 0.1957 0.2284 REMARK 3 5 2.5076 - 2.3280 0.99 2646 143 0.1892 0.2329 REMARK 3 6 2.3280 - 2.1908 0.98 2646 119 0.1894 0.2283 REMARK 3 7 2.1908 - 2.0811 0.99 2658 110 0.1897 0.2333 REMARK 3 8 2.0811 - 1.9905 0.99 2668 130 0.1974 0.2464 REMARK 3 9 1.9905 - 1.9139 0.99 2663 136 0.2071 0.2385 REMARK 3 10 1.9139 - 1.8479 0.99 2619 133 0.2048 0.2474 REMARK 3 11 1.8479 - 1.7901 0.99 2639 140 0.2018 0.2398 REMARK 3 12 1.7901 - 1.7389 1.00 2639 149 0.2017 0.2139 REMARK 3 13 1.7389 - 1.6932 1.00 2614 148 0.2131 0.2342 REMARK 3 14 1.6932 - 1.6519 0.99 2559 182 0.2334 0.2710 REMARK 3 15 1.6519 - 1.6143 0.98 2581 133 0.2498 0.2984 REMARK 3 16 1.6143 - 1.5800 1.00 2679 133 0.2490 0.3059 REMARK 3 17 1.5800 - 1.5484 0.99 2629 137 0.2722 0.2932 REMARK 3 18 1.5484 - 1.5191 0.98 2563 115 0.2780 0.2738 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2129 REMARK 3 ANGLE : 0.929 2888 REMARK 3 CHIRALITY : 0.036 314 REMARK 3 PLANARITY : 0.004 392 REMARK 3 DIHEDRAL : 13.532 884 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5PON COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1001400922. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50330 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 29.077 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.86600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5AMF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 7.0 -- 30% PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.25250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.86650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.09400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.86650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.25250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.09400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 GLU A 16 REMARK 465 ASN A 17 REMARK 465 LEU A 18 REMARK 465 TYR A 19 REMARK 465 PHE A 20 REMARK 465 GLN A 21 REMARK 465 LEU A 143 REMARK 465 GLU A 144 REMARK 465 GLU A 145 REMARK 465 ALA A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 MET A 149 REMARK 465 HIS A 150 REMARK 465 LEU A 151 REMARK 465 PRO A 152 REMARK 465 GLU A 153 REMARK 465 ARG A 154 REMARK 465 PRO A 155 REMARK 465 ALA A 156 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 VAL B 11 REMARK 465 ASP B 12 REMARK 465 LEU B 13 REMARK 465 GLY B 14 REMARK 465 THR B 15 REMARK 465 GLU B 16 REMARK 465 ASN B 17 REMARK 465 LEU B 18 REMARK 465 TYR B 19 REMARK 465 PHE B 20 REMARK 465 GLN B 21 REMARK 465 GLU B 145 REMARK 465 ALA B 146 REMARK 465 SER B 147 REMARK 465 GLY B 148 REMARK 465 MET B 149 REMARK 465 HIS B 150 REMARK 465 LEU B 151 REMARK 465 PRO B 152 REMARK 465 GLU B 153 REMARK 465 ARG B 154 REMARK 465 PRO B 155 REMARK 465 ALA B 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 MET A 28 CE REMARK 470 LEU A 30 CG CD1 CD2 REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 62 CD CE NZ REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 141 CG1 CG2 CD1 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 ARG B 136 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 34 O HOH B 301 2.11 REMARK 500 O HOH B 341 O HOH B 451 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 339 O HOH B 418 2454 1.92 REMARK 500 O HOH B 309 O HOH B 421 3455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 113 45.02 -95.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 418 DISTANCE = 6.01 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 YES CC(N1CCN(CC1)C1CCCCN1)=O -12.93 REMARK 600 15.27 15.27 CC(N1CCN(CC1)C1CCCCN1)=O < REMARK 600 CONFIDENCE>4 - HIGH CONFIDENCE NONE REMARK 600 0.99 21.414666666666662 1.2081390100797351 REMARK 600 0.94799999999999995 0.074999999999999997 REMARK 600 0.5 1.2280783905489636 -33.44 3.58 3.58 REMARK 600 CC(N1CCN(CC1)C1CCCCN1)=O 4 - HIGH CONFIDENCE NONE 1.0 20.792000000000005 0.9535549129266091 0.95899999999999996 0.066000000000000003< REMARK 600 /RSR> 0.29999999999999999 0.11380392494695996 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 108 O REMARK 620 2 HOH A 370 O 74.9 REMARK 620 3 MET B 107 O 89.7 162.9 REMARK 620 4 ASN B 110 O 158.0 101.7 89.6 REMARK 620 5 HOH B 367 O 100.9 88.5 102.2 100.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8RA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8RA B 203 DBREF 5PON A 23 156 UNP O95696 BRD1_HUMAN 555 688 DBREF 5PON B 23 156 UNP O95696 BRD1_HUMAN 555 688 SEQADV 5PON MET A 1 UNP O95696 EXPRESSION TAG SEQADV 5PON HIS A 2 UNP O95696 EXPRESSION TAG SEQADV 5PON HIS A 3 UNP O95696 EXPRESSION TAG SEQADV 5PON HIS A 4 UNP O95696 EXPRESSION TAG SEQADV 5PON HIS A 5 UNP O95696 EXPRESSION TAG SEQADV 5PON HIS A 6 UNP O95696 EXPRESSION TAG SEQADV 5PON HIS A 7 UNP O95696 EXPRESSION TAG SEQADV 5PON SER A 8 UNP O95696 EXPRESSION TAG SEQADV 5PON SER A 9 UNP O95696 EXPRESSION TAG SEQADV 5PON GLY A 10 UNP O95696 EXPRESSION TAG SEQADV 5PON VAL A 11 UNP O95696 EXPRESSION TAG SEQADV 5PON ASP A 12 UNP O95696 EXPRESSION TAG SEQADV 5PON LEU A 13 UNP O95696 EXPRESSION TAG SEQADV 5PON GLY A 14 UNP O95696 EXPRESSION TAG SEQADV 5PON THR A 15 UNP O95696 EXPRESSION TAG SEQADV 5PON GLU A 16 UNP O95696 EXPRESSION TAG SEQADV 5PON ASN A 17 UNP O95696 EXPRESSION TAG SEQADV 5PON LEU A 18 UNP O95696 EXPRESSION TAG SEQADV 5PON TYR A 19 UNP O95696 EXPRESSION TAG SEQADV 5PON PHE A 20 UNP O95696 EXPRESSION TAG SEQADV 5PON GLN A 21 UNP O95696 EXPRESSION TAG SEQADV 5PON SER A 22 UNP O95696 EXPRESSION TAG SEQADV 5PON MET A 23 UNP O95696 VAL 555 ENGINEERED MUTATION SEQADV 5PON GLU A 34 UNP O95696 PRO 566 ENGINEERED MUTATION SEQADV 5PON ARG A 37 UNP O95696 VAL 569 ENGINEERED MUTATION SEQADV 5PON MET B 1 UNP O95696 EXPRESSION TAG SEQADV 5PON HIS B 2 UNP O95696 EXPRESSION TAG SEQADV 5PON HIS B 3 UNP O95696 EXPRESSION TAG SEQADV 5PON HIS B 4 UNP O95696 EXPRESSION TAG SEQADV 5PON HIS B 5 UNP O95696 EXPRESSION TAG SEQADV 5PON HIS B 6 UNP O95696 EXPRESSION TAG SEQADV 5PON HIS B 7 UNP O95696 EXPRESSION TAG SEQADV 5PON SER B 8 UNP O95696 EXPRESSION TAG SEQADV 5PON SER B 9 UNP O95696 EXPRESSION TAG SEQADV 5PON GLY B 10 UNP O95696 EXPRESSION TAG SEQADV 5PON VAL B 11 UNP O95696 EXPRESSION TAG SEQADV 5PON ASP B 12 UNP O95696 EXPRESSION TAG SEQADV 5PON LEU B 13 UNP O95696 EXPRESSION TAG SEQADV 5PON GLY B 14 UNP O95696 EXPRESSION TAG SEQADV 5PON THR B 15 UNP O95696 EXPRESSION TAG SEQADV 5PON GLU B 16 UNP O95696 EXPRESSION TAG SEQADV 5PON ASN B 17 UNP O95696 EXPRESSION TAG SEQADV 5PON LEU B 18 UNP O95696 EXPRESSION TAG SEQADV 5PON TYR B 19 UNP O95696 EXPRESSION TAG SEQADV 5PON PHE B 20 UNP O95696 EXPRESSION TAG SEQADV 5PON GLN B 21 UNP O95696 EXPRESSION TAG SEQADV 5PON SER B 22 UNP O95696 EXPRESSION TAG SEQADV 5PON MET B 23 UNP O95696 VAL 555 ENGINEERED MUTATION SEQADV 5PON GLU B 34 UNP O95696 PRO 566 ENGINEERED MUTATION SEQADV 5PON ARG B 37 UNP O95696 VAL 569 ENGINEERED MUTATION SEQRES 1 A 156 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 156 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU GLN VAL SEQRES 3 A 156 ALA MET GLU LEU ARG LEU THR GLU LEU THR ARG LEU LEU SEQRES 4 A 156 ARG SER VAL LEU ASP GLN LEU GLN ASP LYS ASP PRO ALA SEQRES 5 A 156 ARG ILE PHE ALA GLN PRO VAL SER LEU LYS GLU VAL PRO SEQRES 6 A 156 ASP TYR LEU ASP HIS ILE LYS HIS PRO MET ASP PHE ALA SEQRES 7 A 156 THR MET ARG LYS ARG LEU GLU ALA GLN GLY TYR LYS ASN SEQRES 8 A 156 LEU HIS GLU PHE GLU GLU ASP PHE ASP LEU ILE ILE ASP SEQRES 9 A 156 ASN CYS MET LYS TYR ASN ALA ARG ASP THR VAL PHE TYR SEQRES 10 A 156 ARG ALA ALA VAL ARG LEU ARG ASP GLN GLY GLY VAL VAL SEQRES 11 A 156 LEU ARG GLN ALA ARG ARG GLU VAL ASP SER ILE GLY LEU SEQRES 12 A 156 GLU GLU ALA SER GLY MET HIS LEU PRO GLU ARG PRO ALA SEQRES 1 B 156 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 156 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU GLN VAL SEQRES 3 B 156 ALA MET GLU LEU ARG LEU THR GLU LEU THR ARG LEU LEU SEQRES 4 B 156 ARG SER VAL LEU ASP GLN LEU GLN ASP LYS ASP PRO ALA SEQRES 5 B 156 ARG ILE PHE ALA GLN PRO VAL SER LEU LYS GLU VAL PRO SEQRES 6 B 156 ASP TYR LEU ASP HIS ILE LYS HIS PRO MET ASP PHE ALA SEQRES 7 B 156 THR MET ARG LYS ARG LEU GLU ALA GLN GLY TYR LYS ASN SEQRES 8 B 156 LEU HIS GLU PHE GLU GLU ASP PHE ASP LEU ILE ILE ASP SEQRES 9 B 156 ASN CYS MET LYS TYR ASN ALA ARG ASP THR VAL PHE TYR SEQRES 10 B 156 ARG ALA ALA VAL ARG LEU ARG ASP GLN GLY GLY VAL VAL SEQRES 11 B 156 LEU ARG GLN ALA ARG ARG GLU VAL ASP SER ILE GLY LEU SEQRES 12 B 156 GLU GLU ALA SER GLY MET HIS LEU PRO GLU ARG PRO ALA HET 8RA A 201 15 HET NA B 201 1 HET EDO B 202 4 HET 8RA B 203 15 HETNAM 8RA 1-[4-(PYRIDIN-2-YL)PIPERAZIN-1-YL]ETHAN-1-ONE HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 8RA 2(C11 H15 N3 O) FORMUL 4 NA NA 1+ FORMUL 5 EDO C2 H6 O2 FORMUL 7 HOH *270(H2 O) HELIX 1 AA1 SER A 22 LYS A 49 1 28 HELIX 2 AA2 ASP A 66 ILE A 71 1 6 HELIX 3 AA3 ASP A 76 ALA A 86 1 11 HELIX 4 AA4 ASN A 91 ASN A 110 1 20 HELIX 5 AA5 THR A 114 GLY A 142 1 29 HELIX 6 AA6 MET B 23 LYS B 49 1 27 HELIX 7 AA7 ASP B 66 ILE B 71 1 6 HELIX 8 AA8 ASP B 76 ALA B 86 1 11 HELIX 9 AA9 ASN B 91 ASN B 110 1 20 HELIX 10 AB1 THR B 114 GLY B 142 1 29 LINK O LYS A 108 NA NA B 201 1555 1555 2.37 LINK O HOH A 370 NA NA B 201 1555 1555 2.38 LINK O MET B 107 NA NA B 201 1555 1555 2.32 LINK O ASN B 110 NA NA B 201 1555 1555 2.29 LINK NA NA B 201 O HOH B 367 1555 1555 2.37 SITE 1 AC1 7 GLU A 63 VAL A 64 ASN A 110 PHE A 116 SITE 2 AC1 7 HOH A 329 MET B 23 HOH B 418 SITE 1 AC2 6 LYS A 108 HOH A 370 MET B 107 ASN B 110 SITE 2 AC2 6 TYR B 117 HOH B 367 SITE 1 AC3 5 LEU B 92 GLU B 96 LEU B 131 ARG B 135 SITE 2 AC3 5 HOH B 368 SITE 1 AC4 6 GLU A 63 VAL B 64 ASN B 110 PHE B 116 SITE 2 AC4 6 HOH B 310 HOH B 398 CRYST1 56.505 56.188 101.733 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017698 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009830 0.00000