data_5Q0K # _entry.id 5Q0K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.352 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5Q0K pdb_00005q0k 10.2210/pdb5q0k/pdb WWPDB D_1001401346 ? ? # _pdbx_database_status.entry_id 5Q0K _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2017-05-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.pdbx_ordinal _audit_author.name _audit_author.identifier_ORCID 1 'Rudolph, M.G.' ? 2 'Benz, J.' ? 3 'Burger, D.' ? 4 'Thoma, R.' ? 5 'Ruf, A.' ? 6 'Joseph, C.' ? 7 'Kuhn, B.' ? 8 'Shao, C.' 0000-0001-6817-7476 9 'Yang, H.' ? 10 'Burley, S.K.' 0000-0002-2487-9713 # _citation.id primary _citation.journal_abbrev 'J. Comput. Aided Mol. Des.' _citation.title 'D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies.' _citation.year 2018 _citation.journal_volume 32 _citation.page_first 1 _citation.page_last 20 _citation.journal_id_ASTM ? _citation.country NE _citation.journal_id_ISSN 1573-4951 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 29204945 _citation.pdbx_database_id_DOI 10.1007/s10822-017-0088-4 # loop_ _citation_author.citation_id _citation_author.ordinal _citation_author.name _citation_author.identifier_ORCID primary 1 'Gaieb, Z.' ? primary 2 'Liu, S.' ? primary 3 'Gathiaka, S.' ? primary 4 'Chiu, M.' ? primary 5 'Yang, H.' ? primary 6 'Shao, C.' 0000-0001-6817-7476 primary 7 'Feher, V.A.' ? primary 8 'Walters, W.P.' ? primary 9 'Kuhn, B.' ? primary 10 'Rudolph, M.G.' ? primary 11 'Burley, S.K.' 0000-0002-2487-9713 primary 12 'Gilson, M.K.' ? primary 13 'Amaro, R.E.' ? # _cell.entry_id 5Q0K _cell.length_a 93.520 _cell.length_b 93.520 _cell.length_c 47.830 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Q0K _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bile acid receptor' 27100.191 1 ? ? 'UNP residues 258-486' ? 2 polymer syn 'COACTIVATOR PEPTIDE SRC-1 HD3' 1790.026 1 ? ? 'UNP residues 744-757' ? 3 water nat water 18.015 119 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Farnesoid X-activated receptor,Farnesol receptor HRR-1,Nuclear receptor subfamily 1 group H member 4,Retinoid X receptor-interacting protein 14,RXR-interacting protein 14 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEAFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL LKGSAVEAMFLRSAEIFNKKLPSGHSDLLEARIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIK DREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ ; ;GSHMELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEAFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL LKGSAVEAMFLRSAEIFNKKLPSGHSDLLEARIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIK DREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ ; A ? 2 'polypeptide(L)' no no KDHQLLRYLLDKDE KDHQLLRYLLDKDE B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLU n 1 6 LEU n 1 7 THR n 1 8 PRO n 1 9 ASP n 1 10 GLN n 1 11 GLN n 1 12 THR n 1 13 LEU n 1 14 LEU n 1 15 HIS n 1 16 PHE n 1 17 ILE n 1 18 MET n 1 19 ASP n 1 20 SER n 1 21 TYR n 1 22 ASN n 1 23 LYS n 1 24 GLN n 1 25 ARG n 1 26 MET n 1 27 PRO n 1 28 GLN n 1 29 GLU n 1 30 ILE n 1 31 THR n 1 32 ASN n 1 33 LYS n 1 34 ILE n 1 35 LEU n 1 36 LYS n 1 37 GLU n 1 38 ALA n 1 39 PHE n 1 40 SER n 1 41 ALA n 1 42 GLU n 1 43 GLU n 1 44 ASN n 1 45 PHE n 1 46 LEU n 1 47 ILE n 1 48 LEU n 1 49 THR n 1 50 GLU n 1 51 MET n 1 52 ALA n 1 53 THR n 1 54 ASN n 1 55 HIS n 1 56 VAL n 1 57 GLN n 1 58 VAL n 1 59 LEU n 1 60 VAL n 1 61 GLU n 1 62 PHE n 1 63 THR n 1 64 LYS n 1 65 LYS n 1 66 LEU n 1 67 PRO n 1 68 GLY n 1 69 PHE n 1 70 GLN n 1 71 THR n 1 72 LEU n 1 73 ASP n 1 74 HIS n 1 75 GLU n 1 76 ASP n 1 77 GLN n 1 78 ILE n 1 79 ALA n 1 80 LEU n 1 81 LEU n 1 82 LYS n 1 83 GLY n 1 84 SER n 1 85 ALA n 1 86 VAL n 1 87 GLU n 1 88 ALA n 1 89 MET n 1 90 PHE n 1 91 LEU n 1 92 ARG n 1 93 SER n 1 94 ALA n 1 95 GLU n 1 96 ILE n 1 97 PHE n 1 98 ASN n 1 99 LYS n 1 100 LYS n 1 101 LEU n 1 102 PRO n 1 103 SER n 1 104 GLY n 1 105 HIS n 1 106 SER n 1 107 ASP n 1 108 LEU n 1 109 LEU n 1 110 GLU n 1 111 ALA n 1 112 ARG n 1 113 ILE n 1 114 ARG n 1 115 ASN n 1 116 SER n 1 117 GLY n 1 118 ILE n 1 119 SER n 1 120 ASP n 1 121 GLU n 1 122 TYR n 1 123 ILE n 1 124 THR n 1 125 PRO n 1 126 MET n 1 127 PHE n 1 128 SER n 1 129 PHE n 1 130 TYR n 1 131 LYS n 1 132 SER n 1 133 ILE n 1 134 GLY n 1 135 GLU n 1 136 LEU n 1 137 LYS n 1 138 MET n 1 139 THR n 1 140 GLN n 1 141 GLU n 1 142 GLU n 1 143 TYR n 1 144 ALA n 1 145 LEU n 1 146 LEU n 1 147 THR n 1 148 ALA n 1 149 ILE n 1 150 VAL n 1 151 ILE n 1 152 LEU n 1 153 SER n 1 154 PRO n 1 155 ASP n 1 156 ARG n 1 157 GLN n 1 158 TYR n 1 159 ILE n 1 160 LYS n 1 161 ASP n 1 162 ARG n 1 163 GLU n 1 164 ALA n 1 165 VAL n 1 166 GLU n 1 167 LYS n 1 168 LEU n 1 169 GLN n 1 170 GLU n 1 171 PRO n 1 172 LEU n 1 173 LEU n 1 174 ASP n 1 175 VAL n 1 176 LEU n 1 177 GLN n 1 178 LYS n 1 179 LEU n 1 180 CYS n 1 181 LYS n 1 182 ILE n 1 183 HIS n 1 184 GLN n 1 185 PRO n 1 186 GLU n 1 187 ASN n 1 188 PRO n 1 189 GLN n 1 190 HIS n 1 191 PHE n 1 192 ALA n 1 193 CYS n 1 194 LEU n 1 195 LEU n 1 196 GLY n 1 197 ARG n 1 198 LEU n 1 199 THR n 1 200 GLU n 1 201 LEU n 1 202 ARG n 1 203 THR n 1 204 PHE n 1 205 ASN n 1 206 HIS n 1 207 HIS n 1 208 HIS n 1 209 ALA n 1 210 GLU n 1 211 MET n 1 212 LEU n 1 213 MET n 1 214 SER n 1 215 TRP n 1 216 ARG n 1 217 VAL n 1 218 ASN n 1 219 ASP n 1 220 HIS n 1 221 LYS n 1 222 PHE n 1 223 THR n 1 224 PRO n 1 225 LEU n 1 226 LEU n 1 227 CYS n 1 228 GLU n 1 229 ILE n 1 230 TRP n 1 231 ASP n 1 232 VAL n 1 233 GLN n 2 1 LYS n 2 2 ASP n 2 3 HIS n 2 4 GLN n 2 5 LEU n 2 6 LEU n 2 7 ARG n 2 8 TYR n 2 9 LEU n 2 10 LEU n 2 11 ASP n 2 12 LYS n 2 13 ASP n 2 14 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 233 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NR1H4, BAR, FXR, HRR1, RIP14' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP NR1H4_HUMAN Q96RI1 ? 1 ;ELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGS AVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREA VEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ ; 258 2 UNP A8K1V4_HUMAN A8K1V4 ? 2 KDHQLLRYLLDKDE 744 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5Q0K A 5 ? 233 ? Q96RI1 258 ? 486 ? 248 476 2 2 5Q0K B 1 ? 14 ? A8K1V4 744 ? 757 ? 744 757 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5Q0K GLY A 1 ? UNP Q96RI1 ? ? 'expression tag' 244 1 1 5Q0K SER A 2 ? UNP Q96RI1 ? ? 'expression tag' 245 2 1 5Q0K HIS A 3 ? UNP Q96RI1 ? ? 'expression tag' 246 3 1 5Q0K MET A 4 ? UNP Q96RI1 ? ? 'expression tag' 247 4 1 5Q0K ALA A 38 ? UNP Q96RI1 GLU 291 conflict 281 5 1 5Q0K ALA A 111 ? UNP Q96RI1 GLU 364 conflict 354 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 5Q0K _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.29 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'evaporation, hanging drop' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.2M MgCl2, 0.1M HEPES pH 7.5, 25%PEG3350' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-07-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5Q0K _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.d_resolution_low 47.8 _reflns.d_resolution_high 1.80 _reflns.number_obs 22191 _reflns.number_all 22271 _reflns.percent_possible_obs 99.6 _reflns.pdbx_redundancy 11.04 _reflns.pdbx_netI_over_sigmaI 9.34 _reflns.pdbx_Rmerge_I_obs 0.1649 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_low 1.89 _reflns_shell.d_res_high 1.80 _reflns_shell.number_unique_obs 2869 _reflns_shell.number_possible 2935 _reflns_shell.percent_possible_all 97.8 _reflns_shell.pdbx_redundancy 9.87 _reflns_shell.pdbx_netI_over_sigmaI_obs 1.26 _reflns_shell.Rmerge_I_obs 1.0441 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? # _refine.entry_id 5Q0K _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.8000 _refine.ls_d_res_low 19.6300 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.5000 _refine.ls_number_reflns_obs 22150 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2130 _refine.ls_R_factor_R_work 0.2100 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2710 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9800 _refine.ls_number_reflns_R_free 1104 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 46.5800 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.1292 _refine.aniso_B[2][2] 0.1292 _refine.aniso_B[3][3] -0.2584 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9550 _refine.correlation_coeff_Fo_to_Fc_free 0.9100 _refine.overall_SU_R_Cruickshank_DPI 0.1460 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.1490 _refine.pdbx_overall_SU_R_Blow_DPI 0.1470 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.1480 _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 165.960 _refine.B_iso_min 3.310 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_analyze.entry_id 5Q0K _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_obs 0.330 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8000 _refine_hist.d_res_low 19.6300 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 2056 _refine_hist.pdbx_number_residues_total 237 _refine_hist.pdbx_B_iso_mean_solvent 49.40 _refine_hist.pdbx_number_atoms_protein 1937 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' t_dihedral_angle_d 724 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 58 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 279 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1995 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 262 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 2436 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1995 0.009 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 2697 1.000 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 2.380 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 20.110 ? ? ? # _refine_ls_shell.d_res_high 1.8000 _refine_ls_shell.d_res_low 1.8900 _refine_ls_shell.pdbx_total_number_of_bins_used 11 _refine_ls_shell.percent_reflns_obs 96.2900 _refine_ls_shell.number_reflns_R_work 2674 _refine_ls_shell.R_factor_all 0.3563 _refine_ls_shell.R_factor_R_work 0.3535 _refine_ls_shell.R_factor_R_free 0.4066 _refine_ls_shell.percent_reflns_R_free 5.1800 _refine_ls_shell.number_reflns_R_free 146 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.number_reflns_all 2820 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 5Q0K _struct.title 'Ligand binding to FARNESOID-X-RECEPTOR' _struct.pdbx_model_details 'Structures re-refined for D3R docking challenge' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5Q0K _struct_keywords.text 'D3R, FXR, Docking, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 7 ? GLN A 24 ? THR A 250 GLN A 267 1 ? 18 HELX_P HELX_P2 AA2 PRO A 27 ? GLU A 37 ? PRO A 270 GLU A 280 1 ? 11 HELX_P HELX_P3 AA3 SER A 40 ? LYS A 65 ? SER A 283 LYS A 308 1 ? 26 HELX_P HELX_P4 AA4 GLY A 68 ? LEU A 72 ? GLY A 311 LEU A 315 5 ? 5 HELX_P HELX_P5 AA5 ASP A 73 ? LYS A 99 ? ASP A 316 LYS A 342 1 ? 27 HELX_P HELX_P6 AA6 PRO A 102 ? ARG A 114 ? PRO A 345 ARG A 357 1 ? 13 HELX_P HELX_P7 AA7 SER A 119 ? LEU A 136 ? SER A 362 LEU A 379 1 ? 18 HELX_P HELX_P8 AA8 THR A 139 ? LEU A 152 ? THR A 382 LEU A 395 1 ? 14 HELX_P HELX_P9 AA9 ASP A 161 ? GLN A 184 ? ASP A 404 GLN A 427 1 ? 24 HELX_P HELX_P10 AB1 GLN A 189 ? SER A 214 ? GLN A 432 SER A 457 1 ? 26 HELX_P HELX_P11 AB2 THR A 223 ? ASP A 231 ? THR A 466 ASP A 474 1 ? 9 HELX_P HELX_P12 AB3 HIS B 3 ? ASP B 11 ? HIS B 746 ASP B 754 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 5Q0K _atom_sites.fract_transf_matrix[1][1] 0.010693 _atom_sites.fract_transf_matrix[1][2] 0.006174 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012347 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020907 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 244 ? ? ? A . n A 1 2 SER 2 245 ? ? ? A . n A 1 3 HIS 3 246 ? ? ? A . n A 1 4 MET 4 247 247 MET MET A . n A 1 5 GLU 5 248 248 GLU GLU A . n A 1 6 LEU 6 249 249 LEU LEU A . n A 1 7 THR 7 250 250 THR THR A . n A 1 8 PRO 8 251 251 PRO PRO A . n A 1 9 ASP 9 252 252 ASP ASP A . n A 1 10 GLN 10 253 253 GLN GLN A . n A 1 11 GLN 11 254 254 GLN GLN A . n A 1 12 THR 12 255 255 THR THR A . n A 1 13 LEU 13 256 256 LEU LEU A . n A 1 14 LEU 14 257 257 LEU LEU A . n A 1 15 HIS 15 258 258 HIS HIS A . n A 1 16 PHE 16 259 259 PHE PHE A . n A 1 17 ILE 17 260 260 ILE ILE A . n A 1 18 MET 18 261 261 MET MET A . n A 1 19 ASP 19 262 262 ASP ASP A . n A 1 20 SER 20 263 263 SER SER A . n A 1 21 TYR 21 264 264 TYR TYR A . n A 1 22 ASN 22 265 265 ASN ASN A . n A 1 23 LYS 23 266 266 LYS LYS A . n A 1 24 GLN 24 267 267 GLN GLN A . n A 1 25 ARG 25 268 268 ARG ARG A . n A 1 26 MET 26 269 269 MET MET A . n A 1 27 PRO 27 270 270 PRO PRO A . n A 1 28 GLN 28 271 271 GLN GLN A . n A 1 29 GLU 29 272 272 GLU GLU A . n A 1 30 ILE 30 273 273 ILE ILE A . n A 1 31 THR 31 274 274 THR THR A . n A 1 32 ASN 32 275 275 ASN ASN A . n A 1 33 LYS 33 276 276 LYS LYS A . n A 1 34 ILE 34 277 277 ILE ILE A . n A 1 35 LEU 35 278 278 LEU LEU A . n A 1 36 LYS 36 279 279 LYS LYS A . n A 1 37 GLU 37 280 280 GLU GLU A . n A 1 38 ALA 38 281 281 ALA ALA A . n A 1 39 PHE 39 282 282 PHE PHE A . n A 1 40 SER 40 283 283 SER SER A . n A 1 41 ALA 41 284 284 ALA ALA A . n A 1 42 GLU 42 285 285 GLU GLU A . n A 1 43 GLU 43 286 286 GLU GLU A . n A 1 44 ASN 44 287 287 ASN ASN A . n A 1 45 PHE 45 288 288 PHE PHE A . n A 1 46 LEU 46 289 289 LEU LEU A . n A 1 47 ILE 47 290 290 ILE ILE A . n A 1 48 LEU 48 291 291 LEU LEU A . n A 1 49 THR 49 292 292 THR THR A . n A 1 50 GLU 50 293 293 GLU GLU A . n A 1 51 MET 51 294 294 MET MET A . n A 1 52 ALA 52 295 295 ALA ALA A . n A 1 53 THR 53 296 296 THR THR A . n A 1 54 ASN 54 297 297 ASN ASN A . n A 1 55 HIS 55 298 298 HIS HIS A . n A 1 56 VAL 56 299 299 VAL VAL A . n A 1 57 GLN 57 300 300 GLN GLN A . n A 1 58 VAL 58 301 301 VAL VAL A . n A 1 59 LEU 59 302 302 LEU LEU A . n A 1 60 VAL 60 303 303 VAL VAL A . n A 1 61 GLU 61 304 304 GLU GLU A . n A 1 62 PHE 62 305 305 PHE PHE A . n A 1 63 THR 63 306 306 THR THR A . n A 1 64 LYS 64 307 307 LYS LYS A . n A 1 65 LYS 65 308 308 LYS LYS A . n A 1 66 LEU 66 309 309 LEU LEU A . n A 1 67 PRO 67 310 310 PRO PRO A . n A 1 68 GLY 68 311 311 GLY GLY A . n A 1 69 PHE 69 312 312 PHE PHE A . n A 1 70 GLN 70 313 313 GLN GLN A . n A 1 71 THR 71 314 314 THR THR A . n A 1 72 LEU 72 315 315 LEU LEU A . n A 1 73 ASP 73 316 316 ASP ASP A . n A 1 74 HIS 74 317 317 HIS HIS A . n A 1 75 GLU 75 318 318 GLU GLU A . n A 1 76 ASP 76 319 319 ASP ASP A . n A 1 77 GLN 77 320 320 GLN GLN A . n A 1 78 ILE 78 321 321 ILE ILE A . n A 1 79 ALA 79 322 322 ALA ALA A . n A 1 80 LEU 80 323 323 LEU LEU A . n A 1 81 LEU 81 324 324 LEU LEU A . n A 1 82 LYS 82 325 325 LYS LYS A . n A 1 83 GLY 83 326 326 GLY GLY A . n A 1 84 SER 84 327 327 SER SER A . n A 1 85 ALA 85 328 328 ALA ALA A . n A 1 86 VAL 86 329 329 VAL VAL A . n A 1 87 GLU 87 330 330 GLU GLU A . n A 1 88 ALA 88 331 331 ALA ALA A . n A 1 89 MET 89 332 332 MET MET A . n A 1 90 PHE 90 333 333 PHE PHE A . n A 1 91 LEU 91 334 334 LEU LEU A . n A 1 92 ARG 92 335 335 ARG ARG A . n A 1 93 SER 93 336 336 SER SER A . n A 1 94 ALA 94 337 337 ALA ALA A . n A 1 95 GLU 95 338 338 GLU GLU A . n A 1 96 ILE 96 339 339 ILE ILE A . n A 1 97 PHE 97 340 340 PHE PHE A . n A 1 98 ASN 98 341 341 ASN ASN A . n A 1 99 LYS 99 342 342 LYS LYS A . n A 1 100 LYS 100 343 343 LYS LYS A . n A 1 101 LEU 101 344 344 LEU LEU A . n A 1 102 PRO 102 345 345 PRO PRO A . n A 1 103 SER 103 346 346 SER SER A . n A 1 104 GLY 104 347 347 GLY GLY A . n A 1 105 HIS 105 348 348 HIS HIS A . n A 1 106 SER 106 349 349 SER SER A . n A 1 107 ASP 107 350 350 ASP ASP A . n A 1 108 LEU 108 351 351 LEU LEU A . n A 1 109 LEU 109 352 352 LEU LEU A . n A 1 110 GLU 110 353 353 GLU GLU A . n A 1 111 ALA 111 354 354 ALA ALA A . n A 1 112 ARG 112 355 355 ARG ARG A . n A 1 113 ILE 113 356 356 ILE ILE A . n A 1 114 ARG 114 357 357 ARG ARG A . n A 1 115 ASN 115 358 358 ASN ASN A . n A 1 116 SER 116 359 359 SER SER A . n A 1 117 GLY 117 360 360 GLY GLY A . n A 1 118 ILE 118 361 361 ILE ILE A . n A 1 119 SER 119 362 362 SER SER A . n A 1 120 ASP 120 363 363 ASP ASP A . n A 1 121 GLU 121 364 364 GLU GLU A . n A 1 122 TYR 122 365 365 TYR TYR A . n A 1 123 ILE 123 366 366 ILE ILE A . n A 1 124 THR 124 367 367 THR THR A . n A 1 125 PRO 125 368 368 PRO PRO A . n A 1 126 MET 126 369 369 MET MET A . n A 1 127 PHE 127 370 370 PHE PHE A . n A 1 128 SER 128 371 371 SER SER A . n A 1 129 PHE 129 372 372 PHE PHE A . n A 1 130 TYR 130 373 373 TYR TYR A . n A 1 131 LYS 131 374 374 LYS LYS A . n A 1 132 SER 132 375 375 SER SER A . n A 1 133 ILE 133 376 376 ILE ILE A . n A 1 134 GLY 134 377 377 GLY GLY A . n A 1 135 GLU 135 378 378 GLU GLU A . n A 1 136 LEU 136 379 379 LEU LEU A . n A 1 137 LYS 137 380 380 LYS LYS A . n A 1 138 MET 138 381 381 MET MET A . n A 1 139 THR 139 382 382 THR THR A . n A 1 140 GLN 140 383 383 GLN GLN A . n A 1 141 GLU 141 384 384 GLU GLU A . n A 1 142 GLU 142 385 385 GLU GLU A . n A 1 143 TYR 143 386 386 TYR TYR A . n A 1 144 ALA 144 387 387 ALA ALA A . n A 1 145 LEU 145 388 388 LEU LEU A . n A 1 146 LEU 146 389 389 LEU LEU A . n A 1 147 THR 147 390 390 THR THR A . n A 1 148 ALA 148 391 391 ALA ALA A . n A 1 149 ILE 149 392 392 ILE ILE A . n A 1 150 VAL 150 393 393 VAL VAL A . n A 1 151 ILE 151 394 394 ILE ILE A . n A 1 152 LEU 152 395 395 LEU LEU A . n A 1 153 SER 153 396 396 SER SER A . n A 1 154 PRO 154 397 397 PRO PRO A . n A 1 155 ASP 155 398 398 ASP ASP A . n A 1 156 ARG 156 399 399 ARG ARG A . n A 1 157 GLN 157 400 400 GLN GLN A . n A 1 158 TYR 158 401 401 TYR TYR A . n A 1 159 ILE 159 402 402 ILE ILE A . n A 1 160 LYS 160 403 403 LYS LYS A . n A 1 161 ASP 161 404 404 ASP ASP A . n A 1 162 ARG 162 405 405 ARG ARG A . n A 1 163 GLU 163 406 406 GLU GLU A . n A 1 164 ALA 164 407 407 ALA ALA A . n A 1 165 VAL 165 408 408 VAL VAL A . n A 1 166 GLU 166 409 409 GLU GLU A . n A 1 167 LYS 167 410 410 LYS LYS A . n A 1 168 LEU 168 411 411 LEU LEU A . n A 1 169 GLN 169 412 412 GLN GLN A . n A 1 170 GLU 170 413 413 GLU GLU A . n A 1 171 PRO 171 414 414 PRO PRO A . n A 1 172 LEU 172 415 415 LEU LEU A . n A 1 173 LEU 173 416 416 LEU LEU A . n A 1 174 ASP 174 417 417 ASP ASP A . n A 1 175 VAL 175 418 418 VAL VAL A . n A 1 176 LEU 176 419 419 LEU LEU A . n A 1 177 GLN 177 420 420 GLN GLN A . n A 1 178 LYS 178 421 421 LYS LYS A . n A 1 179 LEU 179 422 422 LEU LEU A . n A 1 180 CYS 180 423 423 CYS CYS A . n A 1 181 LYS 181 424 424 LYS LYS A . n A 1 182 ILE 182 425 425 ILE ILE A . n A 1 183 HIS 183 426 426 HIS HIS A . n A 1 184 GLN 184 427 427 GLN GLN A . n A 1 185 PRO 185 428 428 PRO PRO A . n A 1 186 GLU 186 429 429 GLU GLU A . n A 1 187 ASN 187 430 430 ASN ASN A . n A 1 188 PRO 188 431 431 PRO PRO A . n A 1 189 GLN 189 432 432 GLN GLN A . n A 1 190 HIS 190 433 433 HIS HIS A . n A 1 191 PHE 191 434 434 PHE PHE A . n A 1 192 ALA 192 435 435 ALA ALA A . n A 1 193 CYS 193 436 436 CYS CYS A . n A 1 194 LEU 194 437 437 LEU LEU A . n A 1 195 LEU 195 438 438 LEU LEU A . n A 1 196 GLY 196 439 439 GLY GLY A . n A 1 197 ARG 197 440 440 ARG ARG A . n A 1 198 LEU 198 441 441 LEU LEU A . n A 1 199 THR 199 442 442 THR THR A . n A 1 200 GLU 200 443 443 GLU GLU A . n A 1 201 LEU 201 444 444 LEU LEU A . n A 1 202 ARG 202 445 445 ARG ARG A . n A 1 203 THR 203 446 446 THR THR A . n A 1 204 PHE 204 447 447 PHE PHE A . n A 1 205 ASN 205 448 448 ASN ASN A . n A 1 206 HIS 206 449 449 HIS HIS A . n A 1 207 HIS 207 450 450 HIS HIS A . n A 1 208 HIS 208 451 451 HIS HIS A . n A 1 209 ALA 209 452 452 ALA ALA A . n A 1 210 GLU 210 453 453 GLU GLU A . n A 1 211 MET 211 454 454 MET MET A . n A 1 212 LEU 212 455 455 LEU LEU A . n A 1 213 MET 213 456 456 MET MET A . n A 1 214 SER 214 457 457 SER SER A . n A 1 215 TRP 215 458 458 TRP TRP A . n A 1 216 ARG 216 459 459 ARG ARG A . n A 1 217 VAL 217 460 ? ? ? A . n A 1 218 ASN 218 461 ? ? ? A . n A 1 219 ASP 219 462 ? ? ? A . n A 1 220 HIS 220 463 ? ? ? A . n A 1 221 LYS 221 464 464 LYS LYS A . n A 1 222 PHE 222 465 465 PHE PHE A . n A 1 223 THR 223 466 466 THR THR A . n A 1 224 PRO 224 467 467 PRO PRO A . n A 1 225 LEU 225 468 468 LEU LEU A . n A 1 226 LEU 226 469 469 LEU LEU A . n A 1 227 CYS 227 470 470 CYS CYS A . n A 1 228 GLU 228 471 471 GLU GLU A . n A 1 229 ILE 229 472 472 ILE ILE A . n A 1 230 TRP 230 473 473 TRP TRP A . n A 1 231 ASP 231 474 474 ASP ASP A . n A 1 232 VAL 232 475 ? ? ? A . n A 1 233 GLN 233 476 ? ? ? A . n B 2 1 LYS 1 744 744 LYS ALA B . n B 2 2 ASP 2 745 745 ASP ASP B . n B 2 3 HIS 3 746 746 HIS HIS B . n B 2 4 GLN 4 747 747 GLN GLN B . n B 2 5 LEU 5 748 748 LEU LEU B . n B 2 6 LEU 6 749 749 LEU LEU B . n B 2 7 ARG 7 750 750 ARG ARG B . n B 2 8 TYR 8 751 751 TYR TYR B . n B 2 9 LEU 9 752 752 LEU LEU B . n B 2 10 LEU 10 753 753 LEU LEU B . n B 2 11 ASP 11 754 754 ASP ASP B . n B 2 12 LYS 12 755 755 LYS LYS B . n B 2 13 ASP 13 756 756 ASP ASP B . n B 2 14 GLU 14 757 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 501 501 HOH HOH A . C 3 HOH 2 502 502 HOH HOH A . C 3 HOH 3 503 503 HOH HOH A . C 3 HOH 4 504 504 HOH HOH A . C 3 HOH 5 505 505 HOH HOH A . C 3 HOH 6 506 506 HOH HOH A . C 3 HOH 7 507 507 HOH HOH A . C 3 HOH 8 508 508 HOH HOH A . C 3 HOH 9 509 509 HOH HOH A . C 3 HOH 10 510 510 HOH HOH A . C 3 HOH 11 511 511 HOH HOH A . C 3 HOH 12 512 512 HOH HOH A . C 3 HOH 13 513 513 HOH HOH A . C 3 HOH 14 514 514 HOH HOH A . C 3 HOH 15 515 515 HOH HOH A . C 3 HOH 16 516 516 HOH HOH A . C 3 HOH 17 517 517 HOH HOH A . C 3 HOH 18 518 518 HOH HOH A . C 3 HOH 19 519 519 HOH HOH A . C 3 HOH 20 520 520 HOH HOH A . C 3 HOH 21 521 521 HOH HOH A . C 3 HOH 22 522 522 HOH HOH A . C 3 HOH 23 523 523 HOH HOH A . C 3 HOH 24 524 524 HOH HOH A . C 3 HOH 25 525 525 HOH HOH A . C 3 HOH 26 526 526 HOH HOH A . C 3 HOH 27 527 527 HOH HOH A . C 3 HOH 28 528 528 HOH HOH A . C 3 HOH 29 529 529 HOH HOH A . C 3 HOH 30 530 530 HOH HOH A . C 3 HOH 31 531 531 HOH HOH A . C 3 HOH 32 532 532 HOH HOH A . C 3 HOH 33 533 533 HOH HOH A . C 3 HOH 34 534 534 HOH HOH A . C 3 HOH 35 535 535 HOH HOH A . C 3 HOH 36 536 536 HOH HOH A . C 3 HOH 37 537 537 HOH HOH A . C 3 HOH 38 538 538 HOH HOH A . C 3 HOH 39 539 539 HOH HOH A . C 3 HOH 40 540 540 HOH HOH A . C 3 HOH 41 541 541 HOH HOH A . C 3 HOH 42 542 542 HOH HOH A . C 3 HOH 43 543 543 HOH HOH A . C 3 HOH 44 544 544 HOH HOH A . C 3 HOH 45 545 545 HOH HOH A . C 3 HOH 46 546 546 HOH HOH A . C 3 HOH 47 547 547 HOH HOH A . C 3 HOH 48 548 548 HOH HOH A . C 3 HOH 49 549 549 HOH HOH A . C 3 HOH 50 550 550 HOH HOH A . C 3 HOH 51 551 551 HOH HOH A . C 3 HOH 52 552 552 HOH HOH A . C 3 HOH 53 553 553 HOH HOH A . C 3 HOH 54 554 554 HOH HOH A . C 3 HOH 55 555 555 HOH HOH A . C 3 HOH 56 556 556 HOH HOH A . C 3 HOH 57 557 557 HOH HOH A . C 3 HOH 58 558 558 HOH HOH A . C 3 HOH 59 559 559 HOH HOH A . C 3 HOH 60 560 560 HOH HOH A . C 3 HOH 61 561 561 HOH HOH A . C 3 HOH 62 562 562 HOH HOH A . C 3 HOH 63 563 563 HOH HOH A . C 3 HOH 64 564 564 HOH HOH A . C 3 HOH 65 565 565 HOH HOH A . C 3 HOH 66 566 566 HOH HOH A . C 3 HOH 67 567 567 HOH HOH A . C 3 HOH 68 568 568 HOH HOH A . C 3 HOH 69 569 569 HOH HOH A . C 3 HOH 70 570 570 HOH HOH A . C 3 HOH 71 571 571 HOH HOH A . C 3 HOH 72 572 572 HOH HOH A . C 3 HOH 73 573 573 HOH HOH A . C 3 HOH 74 574 574 HOH HOH A . C 3 HOH 75 575 575 HOH HOH A . C 3 HOH 76 576 576 HOH HOH A . C 3 HOH 77 577 577 HOH HOH A . C 3 HOH 78 578 578 HOH HOH A . C 3 HOH 79 579 579 HOH HOH A . C 3 HOH 80 580 580 HOH HOH A . C 3 HOH 81 581 581 HOH HOH A . C 3 HOH 82 582 582 HOH HOH A . C 3 HOH 83 583 583 HOH HOH A . C 3 HOH 84 584 584 HOH HOH A . C 3 HOH 85 585 585 HOH HOH A . C 3 HOH 86 586 586 HOH HOH A . C 3 HOH 87 587 587 HOH HOH A . C 3 HOH 88 588 588 HOH HOH A . C 3 HOH 89 589 589 HOH HOH A . C 3 HOH 90 590 590 HOH HOH A . C 3 HOH 91 591 591 HOH HOH A . C 3 HOH 92 592 592 HOH HOH A . C 3 HOH 93 593 593 HOH HOH A . C 3 HOH 94 594 594 HOH HOH A . C 3 HOH 95 595 595 HOH HOH A . C 3 HOH 96 596 596 HOH HOH A . C 3 HOH 97 597 597 HOH HOH A . C 3 HOH 98 598 598 HOH HOH A . C 3 HOH 99 599 599 HOH HOH A . C 3 HOH 100 600 600 HOH HOH A . C 3 HOH 101 601 601 HOH HOH A . C 3 HOH 102 602 602 HOH HOH A . C 3 HOH 103 603 603 HOH HOH A . C 3 HOH 104 604 604 HOH HOH A . C 3 HOH 105 605 605 HOH HOH A . C 3 HOH 106 606 606 HOH HOH A . C 3 HOH 107 607 607 HOH HOH A . C 3 HOH 108 608 608 HOH HOH A . C 3 HOH 109 609 609 HOH HOH A . C 3 HOH 110 610 610 HOH HOH A . C 3 HOH 111 611 611 HOH HOH A . C 3 HOH 112 612 612 HOH HOH A . D 3 HOH 1 801 801 HOH HOH B . D 3 HOH 2 802 802 HOH HOH B . D 3 HOH 3 803 803 HOH HOH B . D 3 HOH 4 804 804 HOH HOH B . D 3 HOH 5 805 805 HOH HOH B . D 3 HOH 6 806 806 HOH HOH B . D 3 HOH 7 807 807 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1170 ? 1 MORE -8 ? 1 'SSA (A^2)' 12070 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-07-05 2 'Structure model' 1 1 2017-07-19 3 'Structure model' 1 2 2017-12-20 4 'Structure model' 1 3 2018-01-31 5 'Structure model' 1 4 2018-02-21 6 'Structure model' 1 5 2021-02-10 7 'Structure model' 1 6 2021-11-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Structure summary' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Structure summary' 8 7 'Structure model' 'Database references' 9 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' citation 6 5 'Structure model' pdbx_deposit_group 7 6 'Structure model' audit_author 8 6 'Structure model' citation 9 6 'Structure model' citation_author 10 7 'Structure model' database_2 11 7 'Structure model' pdbx_deposit_group # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_abbrev' 2 3 'Structure model' '_citation.journal_id_CSD' 3 3 'Structure model' '_citation.journal_id_ISSN' 4 3 'Structure model' '_citation.pdbx_database_id_DOI' 5 3 'Structure model' '_citation.pdbx_database_id_PubMed' 6 3 'Structure model' '_citation.title' 7 3 'Structure model' '_citation.year' 8 4 'Structure model' '_citation.journal_volume' 9 4 'Structure model' '_citation.page_first' 10 4 'Structure model' '_citation.page_last' 11 4 'Structure model' '_citation.year' 12 5 'Structure model' '_pdbx_deposit_group.group_type' 13 6 'Structure model' '_audit_author.identifier_ORCID' 14 6 'Structure model' '_citation.country' 15 6 'Structure model' '_citation_author.identifier_ORCID' 16 7 'Structure model' '_database_2.pdbx_DOI' 17 7 'Structure model' '_database_2.pdbx_database_accession' 18 7 'Structure model' '_pdbx_deposit_group.group_description' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 32.3451 10.7782 -0.5270 -0.0651 -0.1049 -0.0362 0.0151 0.0498 0.0106 3.5883 1.6211 1.7399 0.6591 0.4065 0.3314 0.2653 -0.2271 -0.0382 -0.1438 -0.0523 -0.1017 0.0440 0.1715 0.1210 'X-RAY DIFFRACTION' 2 ? refined 25.1821 21.4502 13.8045 -0.0425 0.0654 0.0085 -0.0236 0.0570 -0.1374 2.1074 0.7174 0.7982 0.6127 0.7033 1.5867 -0.0161 -0.0072 0.0232 -0.0483 0.0509 0.0112 0.0636 -0.0370 -0.0460 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 247 A 474 '{ A|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 744 B 756 '{ B|* }' ? ? ? ? ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 BUSTER 2.10.3 ? ? ? ? refinement ? ? ? 2 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 3 PDB_EXTRACT 3.23 'Dec. 13, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 342 ? ? -131.99 -46.10 2 1 LEU A 395 ? ? -87.39 36.31 3 1 HIS B 746 ? ? 31.77 51.03 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 346 ? OG ? A SER 103 OG 2 1 Y 1 A ARG 459 ? CG ? A ARG 216 CG 3 1 Y 1 A ARG 459 ? CD ? A ARG 216 CD 4 1 Y 1 A ARG 459 ? NE ? A ARG 216 NE 5 1 Y 1 A ARG 459 ? CZ ? A ARG 216 CZ 6 1 Y 1 A ARG 459 ? NH1 ? A ARG 216 NH1 7 1 Y 1 A ARG 459 ? NH2 ? A ARG 216 NH2 8 1 Y 1 B LYS 744 ? CG ? B LYS 1 CG 9 1 Y 1 B LYS 744 ? CD ? B LYS 1 CD 10 1 Y 1 B LYS 744 ? CE ? B LYS 1 CE 11 1 Y 1 B LYS 744 ? NZ ? B LYS 1 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 244 ? A GLY 1 2 1 Y 1 A SER 245 ? A SER 2 3 1 Y 1 A HIS 246 ? A HIS 3 4 1 Y 1 A VAL 460 ? A VAL 217 5 1 Y 1 A ASN 461 ? A ASN 218 6 1 Y 1 A ASP 462 ? A ASP 219 7 1 Y 1 A HIS 463 ? A HIS 220 8 1 Y 1 A VAL 475 ? A VAL 232 9 1 Y 1 A GLN 476 ? A GLN 233 10 1 Y 1 B GLU 757 ? B GLU 14 # _pdbx_deposit_group.group_id G_1002033 _pdbx_deposit_group.group_description 'Ligand binding to FARNESOID-X-RECEPTOR' _pdbx_deposit_group.group_title 'Ligand binding to FARNESOID-X-RECEPTOR' _pdbx_deposit_group.group_type undefined # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #