HEADER TRANSCRIPTION 31-MAY-17 5Q13 TITLE LIGAND BINDING TO FARNESOID-X-RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BILE ACID RECEPTOR; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: FARNESOID X-ACTIVATED RECEPTOR,FARNESOL RECEPTOR HRR-1, COMPND 5 NUCLEAR RECEPTOR SUBFAMILY 1 GROUP H MEMBER 4,RETINOID X RECEPTOR- COMPND 6 INTERACTING PROTEIN 14,RXR-INTERACTING PROTEIN 14; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COACTIVATOR PEPTIDE SRC-1 HD3; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: UNP RESIDUES 744-757; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1H4, BAR, FXR, HRR1, RIP14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS D3R, FXR, DOCKING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,J.BENZ,D.BURGER,R.THOMA,A.RUF,C.JOSEPH,B.KUHN,C.SHAO, AUTHOR 2 H.YANG,S.K.BURLEY REVDAT 8 22-MAY-24 5Q13 1 REMARK REVDAT 7 17-NOV-21 5Q13 1 REMARK REVDAT 6 10-FEB-21 5Q13 1 AUTHOR JRNL REVDAT 5 21-FEB-18 5Q13 1 REMARK REVDAT 4 31-JAN-18 5Q13 1 JRNL REVDAT 3 20-DEC-17 5Q13 1 JRNL REVDAT 2 19-JUL-17 5Q13 1 AUTHOR JRNL REVDAT 1 05-JUL-17 5Q13 0 JRNL AUTH Z.GAIEB,S.LIU,S.GATHIAKA,M.CHIU,H.YANG,C.SHAO,V.A.FEHER, JRNL AUTH 2 W.P.WALTERS,B.KUHN,M.G.RUDOLPH,S.K.BURLEY,M.K.GILSON, JRNL AUTH 3 R.E.AMARO JRNL TITL D3R GRAND CHALLENGE 2: BLIND PREDICTION OF PROTEIN-LIGAND JRNL TITL 2 POSES, AFFINITY RANKINGS, AND RELATIVE BINDING FREE JRNL TITL 3 ENERGIES. JRNL REF J. COMPUT. AIDED MOL. DES. V. 32 1 2018 JRNL REFN ESSN 1573-4951 JRNL PMID 29204945 JRNL DOI 10.1007/S10822-017-0088-4 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.1 REMARK 3 NUMBER OF REFLECTIONS : 31395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1570 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.96 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 23.39 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 838 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2553 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 803 REMARK 3 BIN R VALUE (WORKING SET) : 0.2539 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.18 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 35 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3965 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 515 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.11020 REMARK 3 B22 (A**2) : -0.94940 REMARK 3 B33 (A**2) : -3.16070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.53690 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.236 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.183 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.208 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.176 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4187 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5671 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1541 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 122 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 589 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4187 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 541 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5445 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.45 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.79 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 8.1589 21.4493 57.4553 REMARK 3 T TENSOR REMARK 3 T11: -0.0491 T22: -0.0566 REMARK 3 T33: 0.0097 T12: 0.0015 REMARK 3 T13: 0.0065 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.1159 L22: 0.5826 REMARK 3 L33: 0.6274 L12: -0.1803 REMARK 3 L13: -0.2934 L23: 0.1443 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: -0.0361 S13: 0.0069 REMARK 3 S21: -0.0255 S22: -0.0122 S23: 0.0869 REMARK 3 S31: -0.0294 S32: -0.0234 S33: -0.0030 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.3292 -0.3145 10.6936 REMARK 3 T TENSOR REMARK 3 T11: -0.0518 T22: -0.0293 REMARK 3 T33: -0.0395 T12: 0.0097 REMARK 3 T13: 0.0103 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.9317 L22: 0.4784 REMARK 3 L33: 0.6275 L12: -0.0006 REMARK 3 L13: -0.2519 L23: 0.3103 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: 0.2134 S13: -0.0250 REMARK 3 S21: -0.0458 S22: -0.0086 S23: -0.0097 REMARK 3 S31: -0.0569 S32: 0.0121 S33: -0.0092 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 32.2290 9.3815 17.3754 REMARK 3 T TENSOR REMARK 3 T11: -0.0421 T22: 0.0565 REMARK 3 T33: -0.0287 T12: -0.0382 REMARK 3 T13: 0.0019 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.5399 L22: 1.1112 REMARK 3 L33: 1.5790 L12: 0.8222 REMARK 3 L13: -0.7164 L23: 0.1719 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: 0.0114 S13: 0.0887 REMARK 3 S21: -0.0597 S22: 0.0292 S23: 0.0445 REMARK 3 S31: -0.0387 S32: 0.0331 S33: -0.0158 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Q13 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1001401365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45994 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 38.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.080 REMARK 200 R MERGE (I) : 0.06690 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.09 REMARK 200 R MERGE FOR SHELL (I) : 0.54190 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 25% W/V PEG REMARK 280 3350, EVAPORATION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.20250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 244 REMARK 465 LYS B 744 REMARK 465 ASP B 745 REMARK 465 HIS B 746 REMARK 465 GLU B 757 REMARK 465 GLY C 244 REMARK 465 SER C 245 REMARK 465 HIS C 246 REMARK 465 LYS D 744 REMARK 465 ASP D 756 REMARK 465 GLU D 757 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 245 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 269 75.43 49.52 REMARK 500 PHE A 282 75.06 -103.86 REMARK 500 LEU A 395 40.32 -88.50 REMARK 500 ARG A 399 -63.97 -109.83 REMARK 500 GLN C 427 58.82 -152.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 858 DISTANCE = 5.96 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9MD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9MD C 501 DBREF 5Q13 A 248 476 UNP Q96RI1 NR1H4_HUMAN 258 486 DBREF 5Q13 B 744 757 UNP A8K1V4 A8K1V4_HUMAN 744 757 DBREF 5Q13 C 248 476 UNP Q96RI1 NR1H4_HUMAN 258 486 DBREF 5Q13 D 744 757 UNP A8K1V4 A8K1V4_HUMAN 744 757 SEQADV 5Q13 GLY A 244 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q13 SER A 245 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q13 HIS A 246 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q13 MET A 247 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q13 ALA A 281 UNP Q96RI1 GLU 291 CONFLICT SEQADV 5Q13 ALA A 354 UNP Q96RI1 GLU 364 CONFLICT SEQADV 5Q13 GLY C 244 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q13 SER C 245 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q13 HIS C 246 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q13 MET C 247 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q13 ALA C 281 UNP Q96RI1 GLU 291 CONFLICT SEQADV 5Q13 ALA C 354 UNP Q96RI1 GLU 364 CONFLICT SEQRES 1 A 233 GLY SER HIS MET GLU LEU THR PRO ASP GLN GLN THR LEU SEQRES 2 A 233 LEU HIS PHE ILE MET ASP SER TYR ASN LYS GLN ARG MET SEQRES 3 A 233 PRO GLN GLU ILE THR ASN LYS ILE LEU LYS GLU ALA PHE SEQRES 4 A 233 SER ALA GLU GLU ASN PHE LEU ILE LEU THR GLU MET ALA SEQRES 5 A 233 THR ASN HIS VAL GLN VAL LEU VAL GLU PHE THR LYS LYS SEQRES 6 A 233 LEU PRO GLY PHE GLN THR LEU ASP HIS GLU ASP GLN ILE SEQRES 7 A 233 ALA LEU LEU LYS GLY SER ALA VAL GLU ALA MET PHE LEU SEQRES 8 A 233 ARG SER ALA GLU ILE PHE ASN LYS LYS LEU PRO SER GLY SEQRES 9 A 233 HIS SER ASP LEU LEU GLU ALA ARG ILE ARG ASN SER GLY SEQRES 10 A 233 ILE SER ASP GLU TYR ILE THR PRO MET PHE SER PHE TYR SEQRES 11 A 233 LYS SER ILE GLY GLU LEU LYS MET THR GLN GLU GLU TYR SEQRES 12 A 233 ALA LEU LEU THR ALA ILE VAL ILE LEU SER PRO ASP ARG SEQRES 13 A 233 GLN TYR ILE LYS ASP ARG GLU ALA VAL GLU LYS LEU GLN SEQRES 14 A 233 GLU PRO LEU LEU ASP VAL LEU GLN LYS LEU CYS LYS ILE SEQRES 15 A 233 HIS GLN PRO GLU ASN PRO GLN HIS PHE ALA CYS LEU LEU SEQRES 16 A 233 GLY ARG LEU THR GLU LEU ARG THR PHE ASN HIS HIS HIS SEQRES 17 A 233 ALA GLU MET LEU MET SER TRP ARG VAL ASN ASP HIS LYS SEQRES 18 A 233 PHE THR PRO LEU LEU CYS GLU ILE TRP ASP VAL GLN SEQRES 1 B 14 LYS ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 2 B 14 GLU SEQRES 1 C 233 GLY SER HIS MET GLU LEU THR PRO ASP GLN GLN THR LEU SEQRES 2 C 233 LEU HIS PHE ILE MET ASP SER TYR ASN LYS GLN ARG MET SEQRES 3 C 233 PRO GLN GLU ILE THR ASN LYS ILE LEU LYS GLU ALA PHE SEQRES 4 C 233 SER ALA GLU GLU ASN PHE LEU ILE LEU THR GLU MET ALA SEQRES 5 C 233 THR ASN HIS VAL GLN VAL LEU VAL GLU PHE THR LYS LYS SEQRES 6 C 233 LEU PRO GLY PHE GLN THR LEU ASP HIS GLU ASP GLN ILE SEQRES 7 C 233 ALA LEU LEU LYS GLY SER ALA VAL GLU ALA MET PHE LEU SEQRES 8 C 233 ARG SER ALA GLU ILE PHE ASN LYS LYS LEU PRO SER GLY SEQRES 9 C 233 HIS SER ASP LEU LEU GLU ALA ARG ILE ARG ASN SER GLY SEQRES 10 C 233 ILE SER ASP GLU TYR ILE THR PRO MET PHE SER PHE TYR SEQRES 11 C 233 LYS SER ILE GLY GLU LEU LYS MET THR GLN GLU GLU TYR SEQRES 12 C 233 ALA LEU LEU THR ALA ILE VAL ILE LEU SER PRO ASP ARG SEQRES 13 C 233 GLN TYR ILE LYS ASP ARG GLU ALA VAL GLU LYS LEU GLN SEQRES 14 C 233 GLU PRO LEU LEU ASP VAL LEU GLN LYS LEU CYS LYS ILE SEQRES 15 C 233 HIS GLN PRO GLU ASN PRO GLN HIS PHE ALA CYS LEU LEU SEQRES 16 C 233 GLY ARG LEU THR GLU LEU ARG THR PHE ASN HIS HIS HIS SEQRES 17 C 233 ALA GLU MET LEU MET SER TRP ARG VAL ASN ASP HIS LYS SEQRES 18 C 233 PHE THR PRO LEU LEU CYS GLU ILE TRP ASP VAL GLN SEQRES 1 D 14 LYS ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 2 D 14 GLU HET 9MD A 501 34 HET 9MD C 501 34 HETNAM 9MD (2S)-2-[6-CHLORO-2-(4-CHLOROPHENYL)-5-FLUORO-1H- HETNAM 2 9MD BENZIMIDAZOL-1-YL]-N-CYCLOHEXYL-2-[(2S)-OXAN-2- HETNAM 3 9MD YL]ACETAMIDE FORMUL 5 9MD 2(C26 H28 CL2 F N3 O2) FORMUL 7 HOH *515(H2 O) HELIX 1 AA1 THR A 250 ASN A 265 1 16 HELIX 2 AA2 PRO A 270 GLU A 280 1 11 HELIX 3 AA3 SER A 283 LYS A 308 1 26 HELIX 4 AA4 GLY A 311 LEU A 315 5 5 HELIX 5 AA5 ASP A 316 ASN A 341 1 26 HELIX 6 AA6 GLY A 347 ARG A 357 1 11 HELIX 7 AA7 SER A 362 LEU A 379 1 18 HELIX 8 AA8 THR A 382 LEU A 395 1 14 HELIX 9 AA9 ASP A 404 GLN A 427 1 24 HELIX 10 AB1 GLN A 432 ARG A 445 1 14 HELIX 11 AB2 THR A 446 ASN A 461 1 16 HELIX 12 AB3 THR A 466 TRP A 473 1 8 HELIX 13 AB4 LEU B 748 LYS B 755 1 8 HELIX 14 AB5 THR C 250 ASN C 265 1 16 HELIX 15 AB6 MET C 269 GLU C 280 1 12 HELIX 16 AB7 SER C 283 LYS C 308 1 26 HELIX 17 AB8 GLY C 311 LEU C 315 5 5 HELIX 18 AB9 ASP C 316 ASN C 341 1 26 HELIX 19 AC1 GLY C 347 ASN C 358 1 12 HELIX 20 AC2 SER C 362 LEU C 379 1 18 HELIX 21 AC3 THR C 382 LEU C 395 1 14 HELIX 22 AC4 ASP C 404 GLN C 427 1 24 HELIX 23 AC5 GLN C 432 SER C 457 1 26 HELIX 24 AC6 THR C 466 TRP C 473 1 8 HELIX 25 AC7 HIS D 746 LYS D 755 1 10 SITE 1 AC1 17 LEU A 291 MET A 294 HIS A 298 MET A 332 SITE 2 AC1 17 PHE A 333 ARG A 335 SER A 336 ILE A 339 SITE 3 AC1 17 PHE A 340 LEU A 352 ILE A 356 SER A 359 SITE 4 AC1 17 ILE A 361 MET A 369 TYR A 373 HIS A 451 SITE 5 AC1 17 MET A 454 SITE 1 AC2 16 ILE C 273 ILE C 277 ASN C 287 LEU C 291 SITE 2 AC2 16 MET C 294 HIS C 298 MET C 332 PHE C 333 SITE 3 AC2 16 SER C 336 ILE C 339 PHE C 340 ILE C 356 SITE 4 AC2 16 MET C 369 TYR C 373 MET C 454 LEU C 455 CRYST1 72.035 36.405 95.533 90.00 99.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013882 0.000000 0.002303 0.00000 SCALE2 0.000000 0.027469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010611 0.00000