HEADER TRANSCRIPTION 31-MAY-17 5Q1H TITLE LIGAND BINDING TO FARNESOID-X-RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BILE ACID RECEPTOR; COMPND 3 CHAIN: A, C, E, G; COMPND 4 SYNONYM: FARNESOID X-ACTIVATED RECEPTOR,FARNESOL RECEPTOR HRR-1, COMPND 5 NUCLEAR RECEPTOR SUBFAMILY 1 GROUP H MEMBER 4,RETINOID X RECEPTOR- COMPND 6 INTERACTING PROTEIN 14,RXR-INTERACTING PROTEIN 14; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COACTIVATOR PEPTIDE SRC-1 HD3; COMPND 10 CHAIN: B, D, F, H; COMPND 11 FRAGMENT: UNP RESIDUES 744-757; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1H4, BAR, FXR, HRR1, RIP14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS D3R, FXR, DOCKING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,J.BENZ,D.BURGER,R.THOMA,A.RUF,C.JOSEPH,B.KUHN,C.SHAO, AUTHOR 2 H.YANG,S.K.BURLEY REVDAT 8 17-NOV-21 5Q1H 1 REMARK REVDAT 7 10-FEB-21 5Q1H 1 AUTHOR JRNL REVDAT 6 21-FEB-18 5Q1H 1 REMARK REVDAT 5 31-JAN-18 5Q1H 1 JRNL REVDAT 4 20-DEC-17 5Q1H 1 JRNL REVDAT 3 04-OCT-17 5Q1H 1 REMARK REVDAT 2 19-JUL-17 5Q1H 1 AUTHOR JRNL REVDAT 1 05-JUL-17 5Q1H 0 JRNL AUTH Z.GAIEB,S.LIU,S.GATHIAKA,M.CHIU,H.YANG,C.SHAO,V.A.FEHER, JRNL AUTH 2 W.P.WALTERS,B.KUHN,M.G.RUDOLPH,S.K.BURLEY,M.K.GILSON, JRNL AUTH 3 R.E.AMARO JRNL TITL D3R GRAND CHALLENGE 2: BLIND PREDICTION OF PROTEIN-LIGAND JRNL TITL 2 POSES, AFFINITY RANKINGS, AND RELATIVE BINDING FREE JRNL TITL 3 ENERGIES. JRNL REF J. COMPUT. AIDED MOL. DES. V. 32 1 2018 JRNL REFN ESSN 1573-4951 JRNL PMID 29204945 JRNL DOI 10.1007/S10822-017-0088-4 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 55294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2807 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.26 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.35 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3733 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2260 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3547 REMARK 3 BIN R VALUE (WORKING SET) : 0.2237 REMARK 3 BIN FREE R VALUE : 0.2718 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.98 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 186 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7837 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28850 REMARK 3 B22 (A**2) : 0.99970 REMARK 3 B33 (A**2) : -1.28820 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.26580 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.270 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.232 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.180 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.242 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.186 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8194 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11078 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2972 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 229 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1138 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8194 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1052 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9511 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.43 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.30 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 33.4576 8.3633 4.1871 REMARK 3 T TENSOR REMARK 3 T11: -0.2146 T22: -0.0513 REMARK 3 T33: -0.1491 T12: -0.0151 REMARK 3 T13: 0.0113 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 1.6637 L22: 3.8219 REMARK 3 L33: 2.4520 L12: -0.4283 REMARK 3 L13: 0.4620 L23: -1.4976 REMARK 3 S TENSOR REMARK 3 S11: -0.1287 S12: -0.0633 S13: -0.0134 REMARK 3 S21: 0.1255 S22: 0.2100 S23: -0.0536 REMARK 3 S31: -0.1419 S32: -0.1677 S33: -0.0813 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 4.0873 48.3604 18.8921 REMARK 3 T TENSOR REMARK 3 T11: -0.0697 T22: -0.1559 REMARK 3 T33: -0.2264 T12: -0.0403 REMARK 3 T13: -0.0413 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 2.1006 L22: 2.1431 REMARK 3 L33: 3.8591 L12: -0.2723 REMARK 3 L13: -0.3670 L23: 0.3214 REMARK 3 S TENSOR REMARK 3 S11: -0.1233 S12: -0.1911 S13: 0.1095 REMARK 3 S21: -0.1394 S22: 0.1347 S23: -0.0441 REMARK 3 S31: -0.1660 S32: 0.3216 S33: -0.0114 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { E|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.1408 20.4977 32.1821 REMARK 3 T TENSOR REMARK 3 T11: -0.1448 T22: -0.0671 REMARK 3 T33: -0.1975 T12: 0.0053 REMARK 3 T13: 0.0284 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.3264 L22: 4.0714 REMARK 3 L33: 2.1195 L12: 1.0369 REMARK 3 L13: 0.1524 L23: 0.9633 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.2606 S13: -0.0753 REMARK 3 S21: -0.0240 S22: 0.2552 S23: -0.2018 REMARK 3 S31: -0.1253 S32: 0.1040 S33: -0.2348 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { G|* } REMARK 3 ORIGIN FOR THE GROUP (A): 20.1606 -19.8446 4.6162 REMARK 3 T TENSOR REMARK 3 T11: -0.1883 T22: -0.1595 REMARK 3 T33: -0.1046 T12: 0.0410 REMARK 3 T13: -0.0611 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 3.0421 L22: 2.5157 REMARK 3 L33: 2.8527 L12: 0.6337 REMARK 3 L13: -0.1456 L23: 0.7794 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: -0.1729 S13: -0.2907 REMARK 3 S21: 0.1229 S22: 0.1919 S23: 0.0641 REMARK 3 S31: 0.3040 S32: 0.1286 S33: -0.1849 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Q1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1001401379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55434 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.66700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 25%PEG3350, REMARK 280 EVAPORATION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 91.93950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 244 REMARK 465 SER A 245 REMARK 465 HIS A 246 REMARK 465 GLN A 476 REMARK 465 LYS B 744 REMARK 465 ASP B 756 REMARK 465 GLU B 757 REMARK 465 GLY C 244 REMARK 465 SER C 245 REMARK 465 HIS C 246 REMARK 465 VAL C 475 REMARK 465 GLN C 476 REMARK 465 LYS D 744 REMARK 465 ASP D 745 REMARK 465 ASP D 756 REMARK 465 GLU D 757 REMARK 465 GLY E 244 REMARK 465 SER E 245 REMARK 465 HIS E 246 REMARK 465 LYS F 744 REMARK 465 ASP F 745 REMARK 465 LYS F 755 REMARK 465 ASP F 756 REMARK 465 GLU F 757 REMARK 465 GLY G 244 REMARK 465 SER G 245 REMARK 465 HIS G 246 REMARK 465 GLN G 476 REMARK 465 LYS H 744 REMARK 465 ASP H 745 REMARK 465 ASP H 756 REMARK 465 GLU H 757 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 247 CG SD CE REMARK 470 MET C 247 CG SD CE REMARK 470 ASP E 462 CG OD1 OD2 REMARK 470 GLN E 476 CG CD OE1 NE2 REMARK 470 MET G 247 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 346 122.57 -37.40 REMARK 500 LEU A 395 40.99 -82.11 REMARK 500 ASP A 398 47.32 -88.57 REMARK 500 TYR A 401 17.89 81.77 REMARK 500 LYS A 424 1.57 -69.73 REMARK 500 ILE A 425 -50.13 -122.27 REMARK 500 LEU C 395 57.79 -92.36 REMARK 500 ASP E 398 58.66 -94.12 REMARK 500 TYR E 401 2.72 80.56 REMARK 500 HIS G 348 16.06 -60.55 REMARK 500 LEU G 395 45.27 -92.53 REMARK 500 ASP G 398 31.78 -83.46 REMARK 500 GLN G 427 58.81 -140.65 REMARK 500 ASP G 474 67.43 61.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 668 DISTANCE = 5.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9NP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9NP C 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9NP E 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9NP G 500 DBREF 5Q1H A 248 476 UNP Q96RI1 NR1H4_HUMAN 258 486 DBREF 5Q1H B 744 757 UNP A8K1V4 A8K1V4_HUMAN 744 757 DBREF 5Q1H C 248 476 UNP Q96RI1 NR1H4_HUMAN 258 486 DBREF 5Q1H D 744 757 UNP A8K1V4 A8K1V4_HUMAN 744 757 DBREF 5Q1H E 248 476 UNP Q96RI1 NR1H4_HUMAN 258 486 DBREF 5Q1H F 744 757 UNP A8K1V4 A8K1V4_HUMAN 744 757 DBREF 5Q1H G 248 476 UNP Q96RI1 NR1H4_HUMAN 258 486 DBREF 5Q1H H 744 757 UNP A8K1V4 A8K1V4_HUMAN 744 757 SEQADV 5Q1H GLY A 244 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H SER A 245 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H HIS A 246 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H MET A 247 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H ALA A 281 UNP Q96RI1 GLU 291 CONFLICT SEQADV 5Q1H ALA A 354 UNP Q96RI1 GLU 364 CONFLICT SEQADV 5Q1H GLY C 244 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H SER C 245 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H HIS C 246 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H MET C 247 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H ALA C 281 UNP Q96RI1 GLU 291 CONFLICT SEQADV 5Q1H ALA C 354 UNP Q96RI1 GLU 364 CONFLICT SEQADV 5Q1H GLY E 244 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H SER E 245 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H HIS E 246 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H MET E 247 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H ALA E 281 UNP Q96RI1 GLU 291 CONFLICT SEQADV 5Q1H ALA E 354 UNP Q96RI1 GLU 364 CONFLICT SEQADV 5Q1H GLY G 244 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H SER G 245 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H HIS G 246 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H MET G 247 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q1H ALA G 281 UNP Q96RI1 GLU 291 CONFLICT SEQADV 5Q1H ALA G 354 UNP Q96RI1 GLU 364 CONFLICT SEQRES 1 A 233 GLY SER HIS MET GLU LEU THR PRO ASP GLN GLN THR LEU SEQRES 2 A 233 LEU HIS PHE ILE MET ASP SER TYR ASN LYS GLN ARG MET SEQRES 3 A 233 PRO GLN GLU ILE THR ASN LYS ILE LEU LYS GLU ALA PHE SEQRES 4 A 233 SER ALA GLU GLU ASN PHE LEU ILE LEU THR GLU MET ALA SEQRES 5 A 233 THR ASN HIS VAL GLN VAL LEU VAL GLU PHE THR LYS LYS SEQRES 6 A 233 LEU PRO GLY PHE GLN THR LEU ASP HIS GLU ASP GLN ILE SEQRES 7 A 233 ALA LEU LEU LYS GLY SER ALA VAL GLU ALA MET PHE LEU SEQRES 8 A 233 ARG SER ALA GLU ILE PHE ASN LYS LYS LEU PRO SER GLY SEQRES 9 A 233 HIS SER ASP LEU LEU GLU ALA ARG ILE ARG ASN SER GLY SEQRES 10 A 233 ILE SER ASP GLU TYR ILE THR PRO MET PHE SER PHE TYR SEQRES 11 A 233 LYS SER ILE GLY GLU LEU LYS MET THR GLN GLU GLU TYR SEQRES 12 A 233 ALA LEU LEU THR ALA ILE VAL ILE LEU SER PRO ASP ARG SEQRES 13 A 233 GLN TYR ILE LYS ASP ARG GLU ALA VAL GLU LYS LEU GLN SEQRES 14 A 233 GLU PRO LEU LEU ASP VAL LEU GLN LYS LEU CYS LYS ILE SEQRES 15 A 233 HIS GLN PRO GLU ASN PRO GLN HIS PHE ALA CYS LEU LEU SEQRES 16 A 233 GLY ARG LEU THR GLU LEU ARG THR PHE ASN HIS HIS HIS SEQRES 17 A 233 ALA GLU MET LEU MET SER TRP ARG VAL ASN ASP HIS LYS SEQRES 18 A 233 PHE THR PRO LEU LEU CYS GLU ILE TRP ASP VAL GLN SEQRES 1 B 14 LYS ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 2 B 14 GLU SEQRES 1 C 233 GLY SER HIS MET GLU LEU THR PRO ASP GLN GLN THR LEU SEQRES 2 C 233 LEU HIS PHE ILE MET ASP SER TYR ASN LYS GLN ARG MET SEQRES 3 C 233 PRO GLN GLU ILE THR ASN LYS ILE LEU LYS GLU ALA PHE SEQRES 4 C 233 SER ALA GLU GLU ASN PHE LEU ILE LEU THR GLU MET ALA SEQRES 5 C 233 THR ASN HIS VAL GLN VAL LEU VAL GLU PHE THR LYS LYS SEQRES 6 C 233 LEU PRO GLY PHE GLN THR LEU ASP HIS GLU ASP GLN ILE SEQRES 7 C 233 ALA LEU LEU LYS GLY SER ALA VAL GLU ALA MET PHE LEU SEQRES 8 C 233 ARG SER ALA GLU ILE PHE ASN LYS LYS LEU PRO SER GLY SEQRES 9 C 233 HIS SER ASP LEU LEU GLU ALA ARG ILE ARG ASN SER GLY SEQRES 10 C 233 ILE SER ASP GLU TYR ILE THR PRO MET PHE SER PHE TYR SEQRES 11 C 233 LYS SER ILE GLY GLU LEU LYS MET THR GLN GLU GLU TYR SEQRES 12 C 233 ALA LEU LEU THR ALA ILE VAL ILE LEU SER PRO ASP ARG SEQRES 13 C 233 GLN TYR ILE LYS ASP ARG GLU ALA VAL GLU LYS LEU GLN SEQRES 14 C 233 GLU PRO LEU LEU ASP VAL LEU GLN LYS LEU CYS LYS ILE SEQRES 15 C 233 HIS GLN PRO GLU ASN PRO GLN HIS PHE ALA CYS LEU LEU SEQRES 16 C 233 GLY ARG LEU THR GLU LEU ARG THR PHE ASN HIS HIS HIS SEQRES 17 C 233 ALA GLU MET LEU MET SER TRP ARG VAL ASN ASP HIS LYS SEQRES 18 C 233 PHE THR PRO LEU LEU CYS GLU ILE TRP ASP VAL GLN SEQRES 1 D 14 LYS ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 2 D 14 GLU SEQRES 1 E 233 GLY SER HIS MET GLU LEU THR PRO ASP GLN GLN THR LEU SEQRES 2 E 233 LEU HIS PHE ILE MET ASP SER TYR ASN LYS GLN ARG MET SEQRES 3 E 233 PRO GLN GLU ILE THR ASN LYS ILE LEU LYS GLU ALA PHE SEQRES 4 E 233 SER ALA GLU GLU ASN PHE LEU ILE LEU THR GLU MET ALA SEQRES 5 E 233 THR ASN HIS VAL GLN VAL LEU VAL GLU PHE THR LYS LYS SEQRES 6 E 233 LEU PRO GLY PHE GLN THR LEU ASP HIS GLU ASP GLN ILE SEQRES 7 E 233 ALA LEU LEU LYS GLY SER ALA VAL GLU ALA MET PHE LEU SEQRES 8 E 233 ARG SER ALA GLU ILE PHE ASN LYS LYS LEU PRO SER GLY SEQRES 9 E 233 HIS SER ASP LEU LEU GLU ALA ARG ILE ARG ASN SER GLY SEQRES 10 E 233 ILE SER ASP GLU TYR ILE THR PRO MET PHE SER PHE TYR SEQRES 11 E 233 LYS SER ILE GLY GLU LEU LYS MET THR GLN GLU GLU TYR SEQRES 12 E 233 ALA LEU LEU THR ALA ILE VAL ILE LEU SER PRO ASP ARG SEQRES 13 E 233 GLN TYR ILE LYS ASP ARG GLU ALA VAL GLU LYS LEU GLN SEQRES 14 E 233 GLU PRO LEU LEU ASP VAL LEU GLN LYS LEU CYS LYS ILE SEQRES 15 E 233 HIS GLN PRO GLU ASN PRO GLN HIS PHE ALA CYS LEU LEU SEQRES 16 E 233 GLY ARG LEU THR GLU LEU ARG THR PHE ASN HIS HIS HIS SEQRES 17 E 233 ALA GLU MET LEU MET SER TRP ARG VAL ASN ASP HIS LYS SEQRES 18 E 233 PHE THR PRO LEU LEU CYS GLU ILE TRP ASP VAL GLN SEQRES 1 F 14 LYS ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 2 F 14 GLU SEQRES 1 G 233 GLY SER HIS MET GLU LEU THR PRO ASP GLN GLN THR LEU SEQRES 2 G 233 LEU HIS PHE ILE MET ASP SER TYR ASN LYS GLN ARG MET SEQRES 3 G 233 PRO GLN GLU ILE THR ASN LYS ILE LEU LYS GLU ALA PHE SEQRES 4 G 233 SER ALA GLU GLU ASN PHE LEU ILE LEU THR GLU MET ALA SEQRES 5 G 233 THR ASN HIS VAL GLN VAL LEU VAL GLU PHE THR LYS LYS SEQRES 6 G 233 LEU PRO GLY PHE GLN THR LEU ASP HIS GLU ASP GLN ILE SEQRES 7 G 233 ALA LEU LEU LYS GLY SER ALA VAL GLU ALA MET PHE LEU SEQRES 8 G 233 ARG SER ALA GLU ILE PHE ASN LYS LYS LEU PRO SER GLY SEQRES 9 G 233 HIS SER ASP LEU LEU GLU ALA ARG ILE ARG ASN SER GLY SEQRES 10 G 233 ILE SER ASP GLU TYR ILE THR PRO MET PHE SER PHE TYR SEQRES 11 G 233 LYS SER ILE GLY GLU LEU LYS MET THR GLN GLU GLU TYR SEQRES 12 G 233 ALA LEU LEU THR ALA ILE VAL ILE LEU SER PRO ASP ARG SEQRES 13 G 233 GLN TYR ILE LYS ASP ARG GLU ALA VAL GLU LYS LEU GLN SEQRES 14 G 233 GLU PRO LEU LEU ASP VAL LEU GLN LYS LEU CYS LYS ILE SEQRES 15 G 233 HIS GLN PRO GLU ASN PRO GLN HIS PHE ALA CYS LEU LEU SEQRES 16 G 233 GLY ARG LEU THR GLU LEU ARG THR PHE ASN HIS HIS HIS SEQRES 17 G 233 ALA GLU MET LEU MET SER TRP ARG VAL ASN ASP HIS LYS SEQRES 18 G 233 PHE THR PRO LEU LEU CYS GLU ILE TRP ASP VAL GLN SEQRES 1 H 14 LYS ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 2 H 14 GLU HET 9NP A 500 36 HET 9NP C 500 36 HET 9NP E 500 36 HET 9NP G 500 36 HETNAM 9NP (2S)-N,2-DICYCLOHEXYL-2-{2-[4-(1H-TETRAZOL-5-YL) HETNAM 2 9NP PHENYL]-1H-BENZIMIDAZOL-1-YL}ACETAMIDE FORMUL 9 9NP 4(C28 H33 N7 O) FORMUL 13 HOH *277(H2 O) HELIX 1 AA1 THR A 250 ASN A 265 1 16 HELIX 2 AA2 MET A 269 GLU A 280 1 12 HELIX 3 AA3 SER A 283 LYS A 308 1 26 HELIX 4 AA4 GLY A 311 LEU A 315 5 5 HELIX 5 AA5 ASP A 316 ASN A 341 1 26 HELIX 6 AA6 GLY A 347 ASN A 358 1 12 HELIX 7 AA7 SER A 362 LEU A 379 1 18 HELIX 8 AA8 THR A 382 LEU A 395 1 14 HELIX 9 AA9 ASP A 404 GLN A 427 1 24 HELIX 10 AB1 GLN A 432 HIS A 450 1 19 HELIX 11 AB2 HIS A 450 SER A 457 1 8 HELIX 12 AB3 THR A 466 ASP A 474 1 9 HELIX 13 AB4 HIS B 746 LYS B 755 1 10 HELIX 14 AB5 THR C 250 ASN C 265 1 16 HELIX 15 AB6 MET C 269 GLU C 280 1 12 HELIX 16 AB7 SER C 283 LYS C 308 1 26 HELIX 17 AB8 GLY C 311 LEU C 315 5 5 HELIX 18 AB9 ASP C 316 LYS C 342 1 27 HELIX 19 AC1 GLY C 347 ASN C 358 1 12 HELIX 20 AC2 SER C 362 LEU C 379 1 18 HELIX 21 AC3 THR C 382 LEU C 395 1 14 HELIX 22 AC4 ASP C 404 GLN C 427 1 24 HELIX 23 AC5 GLN C 432 TRP C 458 1 27 HELIX 24 AC6 THR C 466 ASP C 474 1 9 HELIX 25 AC7 GLN D 747 ASP D 754 1 8 HELIX 26 AC8 THR E 250 ASN E 265 1 16 HELIX 27 AC9 MET E 269 GLU E 280 1 12 HELIX 28 AD1 SER E 283 LEU E 309 1 27 HELIX 29 AD2 GLY E 311 LEU E 315 5 5 HELIX 30 AD3 ASP E 316 ASN E 341 1 26 HELIX 31 AD4 GLY E 347 ASN E 358 1 12 HELIX 32 AD5 SER E 362 LEU E 379 1 18 HELIX 33 AD6 THR E 382 LEU E 395 1 14 HELIX 34 AD7 ASP E 404 GLN E 427 1 24 HELIX 35 AD8 GLN E 432 HIS E 450 1 19 HELIX 36 AD9 HIS E 450 SER E 457 1 8 HELIX 37 AE1 THR E 466 ASP E 474 1 9 HELIX 38 AE2 GLN F 747 ASP F 754 1 8 HELIX 39 AE3 THR G 250 ASN G 265 1 16 HELIX 40 AE4 MET G 269 GLU G 280 1 12 HELIX 41 AE5 SER G 283 LYS G 308 1 26 HELIX 42 AE6 GLY G 311 LEU G 315 5 5 HELIX 43 AE7 ASP G 316 ASN G 341 1 26 HELIX 44 AE8 HIS G 348 ASN G 358 1 11 HELIX 45 AE9 SER G 362 LEU G 379 1 18 HELIX 46 AF1 THR G 382 LEU G 395 1 14 HELIX 47 AF2 ASP G 404 GLN G 427 1 24 HELIX 48 AF3 GLN G 432 HIS G 450 1 19 HELIX 49 AF4 HIS G 450 SER G 457 1 8 HELIX 50 AF5 THR G 466 ASP G 474 1 9 HELIX 51 AF6 GLN H 747 LYS H 755 1 9 SSBOND 1 CYS A 436 CYS G 436 1555 1555 2.05 SITE 1 AC1 15 ILE A 277 ASN A 287 LEU A 291 MET A 294 SITE 2 AC1 15 HIS A 298 PHE A 333 SER A 336 ILE A 339 SITE 3 AC1 15 ILE A 356 ILE A 361 TYR A 373 HIS A 451 SITE 4 AC1 15 MET A 454 LEU A 455 TRP A 458 SITE 1 AC2 14 ILE C 277 ILE C 290 LEU C 291 MET C 294 SITE 2 AC2 14 HIS C 298 MET C 332 SER C 336 ILE C 356 SITE 3 AC2 14 ILE C 361 TYR C 373 HIS C 451 MET C 454 SITE 4 AC2 14 LEU C 455 TRP C 458 SITE 1 AC3 14 ILE E 277 LEU E 291 MET E 294 HIS E 298 SITE 2 AC3 14 PHE E 333 SER E 336 ILE E 356 SER E 359 SITE 3 AC3 14 ILE E 361 TYR E 373 HIS E 451 MET E 454 SITE 4 AC3 14 LEU E 455 TRP E 458 SITE 1 AC4 12 LEU G 291 MET G 294 HIS G 298 MET G 332 SITE 2 AC4 12 PHE G 333 SER G 336 ILE G 356 TYR G 373 SITE 3 AC4 12 HIS G 451 MET G 454 LEU G 455 TRP G 458 CRYST1 55.414 183.879 55.787 90.00 98.36 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018046 0.000000 0.002652 0.00000 SCALE2 0.000000 0.005438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018118 0.00000