data_5QCD # _entry.id 5QCD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.352 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5QCD pdb_00005qcd 10.2210/pdb5qcd/pdb WWPDB D_1001401770 ? ? # _pdbx_database_status.entry_id 5QCD _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2017-08-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bembenek, S.D.' 1 ? 'Ameriks, M.K.' 2 ? 'Mirzadegan, T.' 3 ? 'Yang, H.' 4 ? 'Shao, C.' 5 0000-0001-6817-7476 'Burley, S.K.' 6 0000-0002-2487-9713 # _citation.id primary _citation.journal_abbrev 'To be published' _citation.title 'Crystal structure of human Cathepsin-S with bound ligand' _citation.year ? _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bembenek, S.D.' 1 ? primary 'Ameriks, M.K.' 2 ? primary 'Mirzadegan, T.' 3 ? primary 'Yang, H.' 4 ? primary 'Shao, C.' 5 0000-0001-6817-7476 primary 'Burley, S.K.' 6 0000-0002-2487-9713 # _cell.entry_id 5QCD _cell.length_a 76.952 _cell.length_b 73.329 _cell.length_c 44.594 _cell.angle_alpha 90.00 _cell.angle_beta 103.97 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QCD _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cathepsin S' 24516.471 1 3.4.22.27 C139S ? ? 2 non-polymer syn ;{(3S)-7-[(2-chloro-5-{5-(methylsulfonyl)-1-[3-(morpholin-4-yl)propyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridin-3-yl}phenyl)ethynyl]-1,2,3,4-tetrahydroisoquinolin-3-yl}(piperidin-1-yl)methanone ; 705.309 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 270 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ILPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII DNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEILQGGG ; _entity_poly.pdbx_seq_one_letter_code_can ;ILPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII DNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEILQGGG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 LEU n 1 3 PRO n 1 4 ASP n 1 5 SER n 1 6 VAL n 1 7 ASP n 1 8 TRP n 1 9 ARG n 1 10 GLU n 1 11 LYS n 1 12 GLY n 1 13 CYS n 1 14 VAL n 1 15 THR n 1 16 GLU n 1 17 VAL n 1 18 LYS n 1 19 TYR n 1 20 GLN n 1 21 GLY n 1 22 SER n 1 23 CYS n 1 24 GLY n 1 25 ALA n 1 26 SER n 1 27 TRP n 1 28 ALA n 1 29 PHE n 1 30 SER n 1 31 ALA n 1 32 VAL n 1 33 GLY n 1 34 ALA n 1 35 LEU n 1 36 GLU n 1 37 ALA n 1 38 GLN n 1 39 LEU n 1 40 LYS n 1 41 LEU n 1 42 LYS n 1 43 THR n 1 44 GLY n 1 45 LYS n 1 46 LEU n 1 47 VAL n 1 48 SER n 1 49 LEU n 1 50 SER n 1 51 ALA n 1 52 GLN n 1 53 ASN n 1 54 LEU n 1 55 VAL n 1 56 ASP n 1 57 CYS n 1 58 SER n 1 59 THR n 1 60 GLU n 1 61 LYS n 1 62 TYR n 1 63 GLY n 1 64 ASN n 1 65 LYS n 1 66 GLY n 1 67 CYS n 1 68 ASN n 1 69 GLY n 1 70 GLY n 1 71 PHE n 1 72 MET n 1 73 THR n 1 74 THR n 1 75 ALA n 1 76 PHE n 1 77 GLN n 1 78 TYR n 1 79 ILE n 1 80 ILE n 1 81 ASP n 1 82 ASN n 1 83 LYS n 1 84 GLY n 1 85 ILE n 1 86 ASP n 1 87 SER n 1 88 ASP n 1 89 ALA n 1 90 SER n 1 91 TYR n 1 92 PRO n 1 93 TYR n 1 94 LYS n 1 95 ALA n 1 96 MET n 1 97 ASP n 1 98 GLN n 1 99 LYS n 1 100 CYS n 1 101 GLN n 1 102 TYR n 1 103 ASP n 1 104 SER n 1 105 LYS n 1 106 TYR n 1 107 ARG n 1 108 ALA n 1 109 ALA n 1 110 THR n 1 111 CYS n 1 112 SER n 1 113 LYS n 1 114 TYR n 1 115 THR n 1 116 GLU n 1 117 LEU n 1 118 PRO n 1 119 TYR n 1 120 GLY n 1 121 ARG n 1 122 GLU n 1 123 ASP n 1 124 VAL n 1 125 LEU n 1 126 LYS n 1 127 GLU n 1 128 ALA n 1 129 VAL n 1 130 ALA n 1 131 ASN n 1 132 LYS n 1 133 GLY n 1 134 PRO n 1 135 VAL n 1 136 SER n 1 137 VAL n 1 138 GLY n 1 139 VAL n 1 140 ASP n 1 141 ALA n 1 142 ARG n 1 143 HIS n 1 144 PRO n 1 145 SER n 1 146 PHE n 1 147 PHE n 1 148 LEU n 1 149 TYR n 1 150 ARG n 1 151 SER n 1 152 GLY n 1 153 VAL n 1 154 TYR n 1 155 TYR n 1 156 GLU n 1 157 PRO n 1 158 SER n 1 159 CYS n 1 160 THR n 1 161 GLN n 1 162 ASN n 1 163 VAL n 1 164 ASN n 1 165 HIS n 1 166 GLY n 1 167 VAL n 1 168 LEU n 1 169 VAL n 1 170 VAL n 1 171 GLY n 1 172 TYR n 1 173 GLY n 1 174 ASP n 1 175 LEU n 1 176 ASN n 1 177 GLY n 1 178 LYS n 1 179 GLU n 1 180 TYR n 1 181 TRP n 1 182 LEU n 1 183 VAL n 1 184 LYS n 1 185 ASN n 1 186 SER n 1 187 TRP n 1 188 GLY n 1 189 HIS n 1 190 ASN n 1 191 PHE n 1 192 GLY n 1 193 GLU n 1 194 GLU n 1 195 GLY n 1 196 TYR n 1 197 ILE n 1 198 ARG n 1 199 MET n 1 200 ALA n 1 201 ARG n 1 202 ASN n 1 203 LYS n 1 204 GLY n 1 205 ASN n 1 206 HIS n 1 207 CYS n 1 208 GLY n 1 209 ILE n 1 210 ALA n 1 211 SER n 1 212 PHE n 1 213 PRO n 1 214 SER n 1 215 TYR n 1 216 PRO n 1 217 GLU n 1 218 ILE n 1 219 LEU n 1 220 GLN n 1 221 GLY n 1 222 GLY n 1 223 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 223 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CTSS _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type baculovirus _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CATS_HUMAN _struct_ref.pdbx_db_accession P25774 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII DNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI ; _struct_ref.pdbx_align_begin 114 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5QCD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 218 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P25774 _struct_ref_seq.db_align_beg 114 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 331 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 217 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5QCD SER A 26 ? UNP P25774 CYS 139 'engineered mutation' 25 1 1 5QCD LEU A 219 ? UNP P25774 ? ? 'expression tag' 218 2 1 5QCD GLN A 220 ? UNP P25774 ? ? 'expression tag' 219 3 1 5QCD GLY A 221 ? UNP P25774 ? ? 'expression tag' 220 4 1 5QCD GLY A 222 ? UNP P25774 ? ? 'expression tag' 221 5 1 5QCD GLY A 223 ? UNP P25774 ? ? 'expression tag' 222 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BHJ non-polymer . ;{(3S)-7-[(2-chloro-5-{5-(methylsulfonyl)-1-[3-(morpholin-4-yl)propyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridin-3-yl}phenyl)ethynyl]-1,2,3,4-tetrahydroisoquinolin-3-yl}(piperidin-1-yl)methanone ; ? 'C37 H45 Cl N6 O4 S' 705.309 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 5QCD _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 50.66 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.50 _exptl_crystal_grow.pdbx_details ;100MM SODIUM ACETATE PH 4.5, 200MM AMMONIUM ACETATE, 25% PEG 8000. PROTEIN CONCENTRATION 7 MG/ML, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944' _diffrn_detector.pdbx_collection_date 2006-05-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54178 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5QCD _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 32.401 _reflns.d_resolution_high 1.951 _reflns.number_obs 17374 _reflns.number_all ? _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5QCD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17374 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.40 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 98.9 _refine.ls_R_factor_obs 0.154 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.151 _refine.ls_R_factor_R_free 0.195 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.040 _refine.ls_number_reflns_R_free 876 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22.75 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.210 _refine.pdbx_overall_phase_error 18.810 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1715 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 270 _refine_hist.number_atoms_total 2039 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 32.40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1820 'X-RAY DIFFRACTION' ? f_angle_d 0.807 ? ? 2469 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.860 ? ? 1050 'X-RAY DIFFRACTION' ? f_chiral_restr 0.049 ? ? 244 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 315 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.9505 2.0727 2563 0.1888 93.00 0.2320 . . 141 . . 'X-RAY DIFFRACTION' . 2.0727 2.2327 2786 0.1639 100.00 0.1920 . . 128 . . 'X-RAY DIFFRACTION' . 2.2327 2.4573 2767 0.1701 100.00 0.2166 . . 157 . . 'X-RAY DIFFRACTION' . 2.4573 2.8127 2761 0.1608 100.00 0.2134 . . 156 . . 'X-RAY DIFFRACTION' . 2.8127 3.5430 2806 0.1428 100.00 0.1910 . . 145 . . 'X-RAY DIFFRACTION' . 3.5430 32.4057 2815 0.1357 100.00 0.1711 . . 149 . . # _struct.entry_id 5QCD _struct.title 'Crystal structure of human Cathepsin-S with bound ligand' _struct.pdbx_model_details 'Structures re-refined for D3R docking challenge' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5QCD _struct_keywords.text 'D3R, Cathepsin S, Ligand Docking, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 9 ? GLY A 12 ? ARG A 8 GLY A 11 5 ? 4 HELX_P HELX_P2 AA2 ALA A 25 ? GLY A 44 ? ALA A 24 GLY A 43 1 ? 20 HELX_P HELX_P3 AA3 SER A 50 ? SER A 58 ? SER A 49 SER A 57 1 ? 9 HELX_P HELX_P4 AA4 THR A 59 ? GLY A 63 ? THR A 58 GLY A 62 5 ? 5 HELX_P HELX_P5 AA5 LYS A 65 ? GLY A 69 ? LYS A 64 GLY A 68 5 ? 5 HELX_P HELX_P6 AA6 PHE A 71 ? LYS A 83 ? PHE A 70 LYS A 82 1 ? 13 HELX_P HELX_P7 AA7 ASP A 103 ? LYS A 105 ? ASP A 102 LYS A 104 5 ? 3 HELX_P HELX_P8 AA8 ARG A 121 ? LYS A 132 ? ARG A 120 LYS A 131 1 ? 12 HELX_P HELX_P9 AA9 HIS A 143 ? TYR A 149 ? HIS A 142 TYR A 148 1 ? 7 HELX_P HELX_P10 AB1 ASN A 205 ? ILE A 209 ? ASN A 204 ILE A 208 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 67 SG ? ? A CYS 22 A CYS 66 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf2 disulf ? ? A CYS 57 SG ? ? ? 1_555 A CYS 100 SG ? ? A CYS 56 A CYS 99 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf3 disulf ? ? A CYS 159 SG ? ? ? 1_555 A CYS 207 SG ? ? A CYS 158 A CYS 206 1_555 ? ? ? ? ? ? ? 2.009 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 5 ? AA3 ? 2 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 6 ? ASP A 7 ? VAL A 5 ASP A 6 AA1 2 HIS A 165 ? LEU A 175 ? HIS A 164 LEU A 174 AA1 3 VAL A 135 ? VAL A 139 ? VAL A 134 VAL A 138 AA2 1 VAL A 6 ? ASP A 7 ? VAL A 5 ASP A 6 AA2 2 HIS A 165 ? LEU A 175 ? HIS A 164 LEU A 174 AA2 3 LYS A 178 ? LYS A 184 ? LYS A 177 LYS A 183 AA2 4 TYR A 196 ? ALA A 200 ? TYR A 195 ALA A 199 AA2 5 VAL A 153 ? TYR A 154 ? VAL A 152 TYR A 153 AA3 1 ILE A 85 ? ASP A 86 ? ILE A 84 ASP A 85 AA3 2 ARG A 107 ? ALA A 109 ? ARG A 106 ALA A 108 AA4 1 LYS A 113 ? GLU A 116 ? LYS A 112 GLU A 115 AA4 2 SER A 214 ? GLU A 217 ? SER A 213 GLU A 216 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 6 ? N VAL A 5 O TYR A 172 ? O TYR A 171 AA1 2 3 O VAL A 169 ? O VAL A 168 N VAL A 135 ? N VAL A 134 AA2 1 2 N VAL A 6 ? N VAL A 5 O TYR A 172 ? O TYR A 171 AA2 2 3 N LEU A 168 ? N LEU A 167 O LYS A 184 ? O LYS A 183 AA2 3 4 N TRP A 181 ? N TRP A 180 O MET A 199 ? O MET A 198 AA2 4 5 O ARG A 198 ? O ARG A 197 N TYR A 154 ? N TYR A 153 AA3 1 2 N ILE A 85 ? N ILE A 84 O ALA A 108 ? O ALA A 107 AA4 1 2 N LYS A 113 ? N LYS A 112 O GLU A 217 ? O GLU A 216 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BHJ 901 ? 22 'binding site for residue BHJ A 901' AC2 Software A SO4 902 ? 11 'binding site for residue SO4 A 902' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 22 LEU A 41 ? LEU A 40 . ? 4_544 ? 2 AC1 22 ASN A 68 ? ASN A 67 . ? 1_555 ? 3 AC1 22 GLY A 69 ? GLY A 68 . ? 1_555 ? 4 AC1 22 GLY A 70 ? GLY A 69 . ? 1_555 ? 5 AC1 22 PHE A 71 ? PHE A 70 . ? 1_555 ? 6 AC1 22 MET A 72 ? MET A 71 . ? 1_555 ? 7 AC1 22 THR A 74 ? THR A 73 . ? 1_555 ? 8 AC1 22 TYR A 119 ? TYR A 118 . ? 2_654 ? 9 AC1 22 ASN A 162 ? ASN A 161 . ? 1_555 ? 10 AC1 22 VAL A 163 ? VAL A 162 . ? 1_555 ? 11 AC1 22 ASN A 164 ? ASN A 163 . ? 1_555 ? 12 AC1 22 HIS A 165 ? HIS A 164 . ? 1_555 ? 13 AC1 22 GLY A 166 ? GLY A 165 . ? 1_555 ? 14 AC1 22 ASN A 176 ? ASN A 175 . ? 1_554 ? 15 AC1 22 PHE A 212 ? PHE A 211 . ? 1_555 ? 16 AC1 22 SO4 C . ? SO4 A 902 . ? 1_555 ? 17 AC1 22 HOH D . ? HOH A 1020 . ? 1_555 ? 18 AC1 22 HOH D . ? HOH A 1076 . ? 1_555 ? 19 AC1 22 HOH D . ? HOH A 1105 . ? 1_555 ? 20 AC1 22 HOH D . ? HOH A 1113 . ? 4_544 ? 21 AC1 22 HOH D . ? HOH A 1127 . ? 2_654 ? 22 AC1 22 HOH D . ? HOH A 1127 . ? 1_555 ? 23 AC2 11 GLN A 20 ? GLN A 19 . ? 1_555 ? 24 AC2 11 GLY A 24 ? GLY A 23 . ? 1_555 ? 25 AC2 11 ALA A 25 ? ALA A 24 . ? 1_555 ? 26 AC2 11 SER A 26 ? SER A 25 . ? 1_555 ? 27 AC2 11 ASN A 164 ? ASN A 163 . ? 1_555 ? 28 AC2 11 HIS A 165 ? HIS A 164 . ? 1_555 ? 29 AC2 11 TRP A 187 ? TRP A 186 . ? 1_555 ? 30 AC2 11 BHJ B . ? BHJ A 901 . ? 1_555 ? 31 AC2 11 HOH D . ? HOH A 1001 . ? 4_544 ? 32 AC2 11 HOH D . ? HOH A 1075 . ? 1_555 ? 33 AC2 11 HOH D . ? HOH A 1113 . ? 4_544 ? # _atom_sites.entry_id 5QCD _atom_sites.fract_transf_matrix[1][1] 0.012995 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003232 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013637 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023108 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 0 0 ILE ILE A . n A 1 2 LEU 2 1 1 LEU LEU A . n A 1 3 PRO 3 2 2 PRO PRO A . n A 1 4 ASP 4 3 3 ASP ASP A . n A 1 5 SER 5 4 4 SER SER A . n A 1 6 VAL 6 5 5 VAL VAL A . n A 1 7 ASP 7 6 6 ASP ASP A . n A 1 8 TRP 8 7 7 TRP TRP A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 GLU 10 9 9 GLU GLU A . n A 1 11 LYS 11 10 10 LYS LYS A . n A 1 12 GLY 12 11 11 GLY GLY A . n A 1 13 CYS 13 12 12 CYS CYS A . n A 1 14 VAL 14 13 13 VAL VAL A . n A 1 15 THR 15 14 14 THR THR A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 LYS 18 17 17 LYS LYS A . n A 1 19 TYR 19 18 18 TYR TYR A . n A 1 20 GLN 20 19 19 GLN GLN A . n A 1 21 GLY 21 20 20 GLY GLY A . n A 1 22 SER 22 21 21 SER SER A . n A 1 23 CYS 23 22 22 CYS CYS A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 SER 26 25 25 SER SER A . n A 1 27 TRP 27 26 26 TRP TRP A . n A 1 28 ALA 28 27 27 ALA ALA A . n A 1 29 PHE 29 28 28 PHE PHE A . n A 1 30 SER 30 29 29 SER SER A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 VAL 32 31 31 VAL VAL A . n A 1 33 GLY 33 32 32 GLY GLY A . n A 1 34 ALA 34 33 33 ALA ALA A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 GLU 36 35 35 GLU GLU A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 GLN 38 37 37 GLN GLN A . n A 1 39 LEU 39 38 38 LEU LEU A . n A 1 40 LYS 40 39 39 LYS LYS A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 LYS 42 41 41 LYS LYS A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 LYS 45 44 44 LYS LYS A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 VAL 47 46 46 VAL VAL A . n A 1 48 SER 48 47 47 SER SER A . n A 1 49 LEU 49 48 48 LEU LEU A . n A 1 50 SER 50 49 49 SER SER A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 GLN 52 51 51 GLN GLN A . n A 1 53 ASN 53 52 52 ASN ASN A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 VAL 55 54 54 VAL VAL A . n A 1 56 ASP 56 55 55 ASP ASP A . n A 1 57 CYS 57 56 56 CYS CYS A . n A 1 58 SER 58 57 57 SER SER A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 GLU 60 59 59 GLU GLU A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 TYR 62 61 61 TYR TYR A . n A 1 63 GLY 63 62 62 GLY GLY A . n A 1 64 ASN 64 63 63 ASN ASN A . n A 1 65 LYS 65 64 64 LYS LYS A . n A 1 66 GLY 66 65 65 GLY GLY A . n A 1 67 CYS 67 66 66 CYS CYS A . n A 1 68 ASN 68 67 67 ASN ASN A . n A 1 69 GLY 69 68 68 GLY GLY A . n A 1 70 GLY 70 69 69 GLY GLY A . n A 1 71 PHE 71 70 70 PHE PHE A . n A 1 72 MET 72 71 71 MET MET A . n A 1 73 THR 73 72 72 THR THR A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 ALA 75 74 74 ALA ALA A . n A 1 76 PHE 76 75 75 PHE PHE A . n A 1 77 GLN 77 76 76 GLN GLN A . n A 1 78 TYR 78 77 77 TYR TYR A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 ILE 80 79 79 ILE ILE A . n A 1 81 ASP 81 80 80 ASP ASP A . n A 1 82 ASN 82 81 81 ASN ASN A . n A 1 83 LYS 83 82 82 LYS LYS A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 ASP 86 85 85 ASP ASP A . n A 1 87 SER 87 86 86 SER SER A . n A 1 88 ASP 88 87 87 ASP ASP A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 TYR 91 90 90 TYR TYR A . n A 1 92 PRO 92 91 91 PRO PRO A . n A 1 93 TYR 93 92 92 TYR TYR A . n A 1 94 LYS 94 93 93 LYS LYS A . n A 1 95 ALA 95 94 94 ALA ALA A . n A 1 96 MET 96 95 95 MET MET A . n A 1 97 ASP 97 96 96 ASP ASP A . n A 1 98 GLN 98 97 97 GLN GLN A . n A 1 99 LYS 99 98 98 LYS LYS A . n A 1 100 CYS 100 99 99 CYS CYS A . n A 1 101 GLN 101 100 100 GLN GLN A . n A 1 102 TYR 102 101 101 TYR TYR A . n A 1 103 ASP 103 102 102 ASP ASP A . n A 1 104 SER 104 103 103 SER SER A . n A 1 105 LYS 105 104 104 LYS LYS A . n A 1 106 TYR 106 105 105 TYR TYR A . n A 1 107 ARG 107 106 106 ARG ARG A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 ALA 109 108 108 ALA ALA A . n A 1 110 THR 110 109 109 THR THR A . n A 1 111 CYS 111 110 110 CYS CYS A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 LYS 113 112 112 LYS LYS A . n A 1 114 TYR 114 113 113 TYR TYR A . n A 1 115 THR 115 114 114 THR THR A . n A 1 116 GLU 116 115 115 GLU GLU A . n A 1 117 LEU 117 116 116 LEU LEU A . n A 1 118 PRO 118 117 117 PRO PRO A . n A 1 119 TYR 119 118 118 TYR TYR A . n A 1 120 GLY 120 119 119 GLY GLY A . n A 1 121 ARG 121 120 120 ARG ARG A . n A 1 122 GLU 122 121 121 GLU GLU A . n A 1 123 ASP 123 122 122 ASP ASP A . n A 1 124 VAL 124 123 123 VAL VAL A . n A 1 125 LEU 125 124 124 LEU LEU A . n A 1 126 LYS 126 125 125 LYS LYS A . n A 1 127 GLU 127 126 126 GLU GLU A . n A 1 128 ALA 128 127 127 ALA ALA A . n A 1 129 VAL 129 128 128 VAL VAL A . n A 1 130 ALA 130 129 129 ALA ALA A . n A 1 131 ASN 131 130 130 ASN ASN A . n A 1 132 LYS 132 131 131 LYS LYS A . n A 1 133 GLY 133 132 132 GLY GLY A . n A 1 134 PRO 134 133 133 PRO PRO A . n A 1 135 VAL 135 134 134 VAL VAL A . n A 1 136 SER 136 135 135 SER SER A . n A 1 137 VAL 137 136 136 VAL VAL A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 VAL 139 138 138 VAL VAL A . n A 1 140 ASP 140 139 139 ASP ASP A . n A 1 141 ALA 141 140 140 ALA ALA A . n A 1 142 ARG 142 141 141 ARG ARG A . n A 1 143 HIS 143 142 142 HIS HIS A . n A 1 144 PRO 144 143 143 PRO PRO A . n A 1 145 SER 145 144 144 SER SER A . n A 1 146 PHE 146 145 145 PHE PHE A . n A 1 147 PHE 147 146 146 PHE PHE A . n A 1 148 LEU 148 147 147 LEU LEU A . n A 1 149 TYR 149 148 148 TYR TYR A . n A 1 150 ARG 150 149 149 ARG ARG A . n A 1 151 SER 151 150 150 SER SER A . n A 1 152 GLY 152 151 151 GLY GLY A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 TYR 154 153 153 TYR TYR A . n A 1 155 TYR 155 154 154 TYR TYR A . n A 1 156 GLU 156 155 155 GLU GLU A . n A 1 157 PRO 157 156 156 PRO PRO A . n A 1 158 SER 158 157 157 SER SER A . n A 1 159 CYS 159 158 158 CYS CYS A . n A 1 160 THR 160 159 159 THR THR A . n A 1 161 GLN 161 160 160 GLN GLN A . n A 1 162 ASN 162 161 161 ASN ASN A . n A 1 163 VAL 163 162 162 VAL VAL A . n A 1 164 ASN 164 163 163 ASN ASN A . n A 1 165 HIS 165 164 164 HIS HIS A . n A 1 166 GLY 166 165 165 GLY GLY A . n A 1 167 VAL 167 166 166 VAL VAL A . n A 1 168 LEU 168 167 167 LEU LEU A . n A 1 169 VAL 169 168 168 VAL VAL A . n A 1 170 VAL 170 169 169 VAL VAL A . n A 1 171 GLY 171 170 170 GLY GLY A . n A 1 172 TYR 172 171 171 TYR TYR A . n A 1 173 GLY 173 172 172 GLY GLY A . n A 1 174 ASP 174 173 173 ASP ASP A . n A 1 175 LEU 175 174 174 LEU LEU A . n A 1 176 ASN 176 175 175 ASN ASN A . n A 1 177 GLY 177 176 176 GLY GLY A . n A 1 178 LYS 178 177 177 LYS LYS A . n A 1 179 GLU 179 178 178 GLU GLU A . n A 1 180 TYR 180 179 179 TYR TYR A . n A 1 181 TRP 181 180 180 TRP TRP A . n A 1 182 LEU 182 181 181 LEU LEU A . n A 1 183 VAL 183 182 182 VAL VAL A . n A 1 184 LYS 184 183 183 LYS LYS A . n A 1 185 ASN 185 184 184 ASN ASN A . n A 1 186 SER 186 185 185 SER SER A . n A 1 187 TRP 187 186 186 TRP TRP A . n A 1 188 GLY 188 187 187 GLY GLY A . n A 1 189 HIS 189 188 188 HIS HIS A . n A 1 190 ASN 190 189 189 ASN ASN A . n A 1 191 PHE 191 190 190 PHE PHE A . n A 1 192 GLY 192 191 191 GLY GLY A . n A 1 193 GLU 193 192 192 GLU GLU A . n A 1 194 GLU 194 193 193 GLU GLU A . n A 1 195 GLY 195 194 194 GLY GLY A . n A 1 196 TYR 196 195 195 TYR TYR A . n A 1 197 ILE 197 196 196 ILE ILE A . n A 1 198 ARG 198 197 197 ARG ARG A . n A 1 199 MET 199 198 198 MET MET A . n A 1 200 ALA 200 199 199 ALA ALA A . n A 1 201 ARG 201 200 200 ARG ARG A . n A 1 202 ASN 202 201 201 ASN ASN A . n A 1 203 LYS 203 202 202 LYS LYS A . n A 1 204 GLY 204 203 203 GLY GLY A . n A 1 205 ASN 205 204 204 ASN ASN A . n A 1 206 HIS 206 205 205 HIS HIS A . n A 1 207 CYS 207 206 206 CYS CYS A . n A 1 208 GLY 208 207 207 GLY GLY A . n A 1 209 ILE 209 208 208 ILE ILE A . n A 1 210 ALA 210 209 209 ALA ALA A . n A 1 211 SER 211 210 210 SER SER A . n A 1 212 PHE 212 211 211 PHE PHE A . n A 1 213 PRO 213 212 212 PRO PRO A . n A 1 214 SER 214 213 213 SER SER A . n A 1 215 TYR 215 214 214 TYR TYR A . n A 1 216 PRO 216 215 215 PRO PRO A . n A 1 217 GLU 217 216 216 GLU GLU A . n A 1 218 ILE 218 217 217 ILE ILE A . n A 1 219 LEU 219 218 218 LEU LEU A . n A 1 220 GLN 220 219 219 GLN GLN A . n A 1 221 GLY 221 220 220 GLY GLY A . n A 1 222 GLY 222 221 221 GLY GLY A . n A 1 223 GLY 223 222 222 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BHJ 1 901 901 BHJ BHJ A . C 3 SO4 1 902 902 SO4 SO4 A . D 4 HOH 1 1001 1001 HOH HOH A . D 4 HOH 2 1002 1002 HOH HOH A . D 4 HOH 3 1003 1003 HOH HOH A . D 4 HOH 4 1004 1004 HOH HOH A . D 4 HOH 5 1005 1005 HOH HOH A . D 4 HOH 6 1006 1006 HOH HOH A . D 4 HOH 7 1007 1007 HOH HOH A . D 4 HOH 8 1008 1008 HOH HOH A . D 4 HOH 9 1009 1009 HOH HOH A . D 4 HOH 10 1010 1010 HOH HOH A . D 4 HOH 11 1011 1011 HOH HOH A . D 4 HOH 12 1012 1012 HOH HOH A . D 4 HOH 13 1013 1013 HOH HOH A . D 4 HOH 14 1014 1014 HOH HOH A . D 4 HOH 15 1015 1015 HOH HOH A . D 4 HOH 16 1016 1016 HOH HOH A . D 4 HOH 17 1017 1017 HOH HOH A . D 4 HOH 18 1018 1018 HOH HOH A . D 4 HOH 19 1019 1019 HOH HOH A . D 4 HOH 20 1020 1020 HOH HOH A . D 4 HOH 21 1021 1021 HOH HOH A . D 4 HOH 22 1022 1022 HOH HOH A . D 4 HOH 23 1023 1023 HOH HOH A . D 4 HOH 24 1024 1024 HOH HOH A . D 4 HOH 25 1025 1025 HOH HOH A . D 4 HOH 26 1026 1026 HOH HOH A . D 4 HOH 27 1027 1027 HOH HOH A . D 4 HOH 28 1028 1028 HOH HOH A . D 4 HOH 29 1029 1029 HOH HOH A . D 4 HOH 30 1030 1030 HOH HOH A . D 4 HOH 31 1031 1031 HOH HOH A . D 4 HOH 32 1032 1032 HOH HOH A . D 4 HOH 33 1033 1033 HOH HOH A . D 4 HOH 34 1034 1034 HOH HOH A . D 4 HOH 35 1035 1035 HOH HOH A . D 4 HOH 36 1036 1036 HOH HOH A . D 4 HOH 37 1037 1037 HOH HOH A . D 4 HOH 38 1038 1038 HOH HOH A . D 4 HOH 39 1039 1039 HOH HOH A . D 4 HOH 40 1040 1040 HOH HOH A . D 4 HOH 41 1041 1041 HOH HOH A . D 4 HOH 42 1042 1042 HOH HOH A . D 4 HOH 43 1043 1043 HOH HOH A . D 4 HOH 44 1044 1044 HOH HOH A . D 4 HOH 45 1045 1045 HOH HOH A . D 4 HOH 46 1046 1046 HOH HOH A . D 4 HOH 47 1047 1047 HOH HOH A . D 4 HOH 48 1048 1048 HOH HOH A . D 4 HOH 49 1049 1049 HOH HOH A . D 4 HOH 50 1050 1050 HOH HOH A . D 4 HOH 51 1051 1051 HOH HOH A . D 4 HOH 52 1052 1052 HOH HOH A . D 4 HOH 53 1053 1053 HOH HOH A . D 4 HOH 54 1054 1054 HOH HOH A . D 4 HOH 55 1055 1055 HOH HOH A . D 4 HOH 56 1056 1056 HOH HOH A . D 4 HOH 57 1057 1057 HOH HOH A . D 4 HOH 58 1058 1058 HOH HOH A . D 4 HOH 59 1059 1059 HOH HOH A . D 4 HOH 60 1060 1060 HOH HOH A . D 4 HOH 61 1061 1061 HOH HOH A . D 4 HOH 62 1062 1062 HOH HOH A . D 4 HOH 63 1063 1063 HOH HOH A . D 4 HOH 64 1064 1064 HOH HOH A . D 4 HOH 65 1065 1065 HOH HOH A . D 4 HOH 66 1066 1066 HOH HOH A . D 4 HOH 67 1067 1067 HOH HOH A . D 4 HOH 68 1068 1068 HOH HOH A . D 4 HOH 69 1069 1069 HOH HOH A . D 4 HOH 70 1070 1070 HOH HOH A . D 4 HOH 71 1071 1071 HOH HOH A . D 4 HOH 72 1072 1072 HOH HOH A . D 4 HOH 73 1073 1073 HOH HOH A . D 4 HOH 74 1074 1074 HOH HOH A . D 4 HOH 75 1075 1075 HOH HOH A . D 4 HOH 76 1076 1076 HOH HOH A . D 4 HOH 77 1077 1077 HOH HOH A . D 4 HOH 78 1078 1078 HOH HOH A . D 4 HOH 79 1079 1079 HOH HOH A . D 4 HOH 80 1080 1080 HOH HOH A . D 4 HOH 81 1081 1081 HOH HOH A . D 4 HOH 82 1082 1082 HOH HOH A . D 4 HOH 83 1083 1083 HOH HOH A . D 4 HOH 84 1084 1084 HOH HOH A . D 4 HOH 85 1085 1085 HOH HOH A . D 4 HOH 86 1086 1086 HOH HOH A . D 4 HOH 87 1087 1087 HOH HOH A . D 4 HOH 88 1088 1088 HOH HOH A . D 4 HOH 89 1089 1089 HOH HOH A . D 4 HOH 90 1090 1090 HOH HOH A . D 4 HOH 91 1091 1091 HOH HOH A . D 4 HOH 92 1092 1092 HOH HOH A . D 4 HOH 93 1093 1093 HOH HOH A . D 4 HOH 94 1094 1094 HOH HOH A . D 4 HOH 95 1095 1095 HOH HOH A . D 4 HOH 96 1096 1096 HOH HOH A . D 4 HOH 97 1097 1097 HOH HOH A . D 4 HOH 98 1098 1098 HOH HOH A . D 4 HOH 99 1099 1099 HOH HOH A . D 4 HOH 100 1100 1100 HOH HOH A . D 4 HOH 101 1101 1101 HOH HOH A . D 4 HOH 102 1102 1102 HOH HOH A . D 4 HOH 103 1103 1103 HOH HOH A . D 4 HOH 104 1104 1104 HOH HOH A . D 4 HOH 105 1105 1105 HOH HOH A . D 4 HOH 106 1106 1106 HOH HOH A . D 4 HOH 107 1107 1107 HOH HOH A . D 4 HOH 108 1108 1108 HOH HOH A . D 4 HOH 109 1109 1109 HOH HOH A . D 4 HOH 110 1110 1110 HOH HOH A . D 4 HOH 111 1111 1111 HOH HOH A . D 4 HOH 112 1112 1112 HOH HOH A . D 4 HOH 113 1113 1113 HOH HOH A . D 4 HOH 114 1114 1114 HOH HOH A . D 4 HOH 115 1115 1115 HOH HOH A . D 4 HOH 116 1116 1116 HOH HOH A . D 4 HOH 117 1117 1117 HOH HOH A . D 4 HOH 118 1118 1118 HOH HOH A . D 4 HOH 119 1119 1119 HOH HOH A . D 4 HOH 120 1120 1120 HOH HOH A . D 4 HOH 121 1121 1121 HOH HOH A . D 4 HOH 122 1122 1122 HOH HOH A . D 4 HOH 123 1123 1123 HOH HOH A . D 4 HOH 124 1124 1124 HOH HOH A . D 4 HOH 125 1125 1125 HOH HOH A . D 4 HOH 126 1126 1126 HOH HOH A . D 4 HOH 127 1127 1127 HOH HOH A . D 4 HOH 128 1128 1128 HOH HOH A . D 4 HOH 129 1129 1129 HOH HOH A . D 4 HOH 130 1130 1130 HOH HOH A . D 4 HOH 131 1131 1131 HOH HOH A . D 4 HOH 132 1132 1132 HOH HOH A . D 4 HOH 133 1133 1133 HOH HOH A . D 4 HOH 134 1134 1134 HOH HOH A . D 4 HOH 135 1135 1135 HOH HOH A . D 4 HOH 136 1136 1136 HOH HOH A . D 4 HOH 137 1137 1137 HOH HOH A . D 4 HOH 138 1138 1138 HOH HOH A . D 4 HOH 139 1139 1139 HOH HOH A . D 4 HOH 140 1140 1140 HOH HOH A . D 4 HOH 141 1141 1141 HOH HOH A . D 4 HOH 142 1142 1142 HOH HOH A . D 4 HOH 143 1143 1143 HOH HOH A . D 4 HOH 144 1144 1144 HOH HOH A . D 4 HOH 145 1145 1145 HOH HOH A . D 4 HOH 146 1146 1146 HOH HOH A . D 4 HOH 147 1147 1147 HOH HOH A . D 4 HOH 148 1148 1148 HOH HOH A . D 4 HOH 149 1149 1149 HOH HOH A . D 4 HOH 150 1150 1150 HOH HOH A . D 4 HOH 151 1151 1151 HOH HOH A . D 4 HOH 152 1152 1152 HOH HOH A . D 4 HOH 153 1153 1153 HOH HOH A . D 4 HOH 154 1154 1154 HOH HOH A . D 4 HOH 155 1155 1155 HOH HOH A . D 4 HOH 156 1156 1156 HOH HOH A . D 4 HOH 157 1157 1157 HOH HOH A . D 4 HOH 158 1158 1158 HOH HOH A . D 4 HOH 159 1159 1159 HOH HOH A . D 4 HOH 160 1160 1160 HOH HOH A . D 4 HOH 161 1161 1161 HOH HOH A . D 4 HOH 162 1162 1162 HOH HOH A . D 4 HOH 163 1163 1163 HOH HOH A . D 4 HOH 164 1164 1164 HOH HOH A . D 4 HOH 165 1165 1165 HOH HOH A . D 4 HOH 166 1166 1166 HOH HOH A . D 4 HOH 167 1167 1167 HOH HOH A . D 4 HOH 168 1168 1168 HOH HOH A . D 4 HOH 169 1169 1169 HOH HOH A . D 4 HOH 170 1170 1170 HOH HOH A . D 4 HOH 171 1171 1171 HOH HOH A . D 4 HOH 172 1172 1172 HOH HOH A . D 4 HOH 173 1173 1173 HOH HOH A . D 4 HOH 174 1174 1174 HOH HOH A . D 4 HOH 175 1175 1175 HOH HOH A . D 4 HOH 176 1176 1176 HOH HOH A . D 4 HOH 177 1177 1177 HOH HOH A . D 4 HOH 178 1178 1178 HOH HOH A . D 4 HOH 179 1179 1179 HOH HOH A . D 4 HOH 180 1180 1180 HOH HOH A . D 4 HOH 181 1181 1181 HOH HOH A . D 4 HOH 182 1182 1182 HOH HOH A . D 4 HOH 183 1183 1183 HOH HOH A . D 4 HOH 184 1184 1184 HOH HOH A . D 4 HOH 185 1185 1185 HOH HOH A . D 4 HOH 186 1186 1186 HOH HOH A . D 4 HOH 187 1187 1187 HOH HOH A . D 4 HOH 188 1188 1188 HOH HOH A . D 4 HOH 189 1189 1189 HOH HOH A . D 4 HOH 190 1190 1190 HOH HOH A . D 4 HOH 191 1191 1191 HOH HOH A . D 4 HOH 192 1192 1192 HOH HOH A . D 4 HOH 193 1193 1193 HOH HOH A . D 4 HOH 194 1194 1194 HOH HOH A . D 4 HOH 195 1195 1195 HOH HOH A . D 4 HOH 196 1196 1196 HOH HOH A . D 4 HOH 197 1197 1197 HOH HOH A . D 4 HOH 198 1198 1198 HOH HOH A . D 4 HOH 199 1199 1199 HOH HOH A . D 4 HOH 200 1200 1200 HOH HOH A . D 4 HOH 201 1201 1201 HOH HOH A . D 4 HOH 202 1202 1202 HOH HOH A . D 4 HOH 203 1203 1203 HOH HOH A . D 4 HOH 204 1204 1204 HOH HOH A . D 4 HOH 205 1205 1205 HOH HOH A . D 4 HOH 206 1206 1206 HOH HOH A . D 4 HOH 207 1207 1207 HOH HOH A . D 4 HOH 208 1208 1208 HOH HOH A . D 4 HOH 209 1209 1209 HOH HOH A . D 4 HOH 210 1210 1210 HOH HOH A . D 4 HOH 211 1211 1211 HOH HOH A . D 4 HOH 212 1212 1212 HOH HOH A . D 4 HOH 213 1213 1213 HOH HOH A . D 4 HOH 214 1214 1214 HOH HOH A . D 4 HOH 215 1215 1215 HOH HOH A . D 4 HOH 216 1216 1216 HOH HOH A . D 4 HOH 217 1217 1217 HOH HOH A . D 4 HOH 218 1218 1218 HOH HOH A . D 4 HOH 219 1219 1219 HOH HOH A . D 4 HOH 220 1220 1220 HOH HOH A . D 4 HOH 221 1221 1221 HOH HOH A . D 4 HOH 222 1222 1222 HOH HOH A . D 4 HOH 223 1223 1223 HOH HOH A . D 4 HOH 224 1224 1224 HOH HOH A . D 4 HOH 225 1225 1225 HOH HOH A . D 4 HOH 226 1226 1226 HOH HOH A . D 4 HOH 227 1227 1227 HOH HOH A . D 4 HOH 228 1228 1228 HOH HOH A . D 4 HOH 229 1229 1229 HOH HOH A . D 4 HOH 230 1230 1230 HOH HOH A . D 4 HOH 231 1231 1231 HOH HOH A . D 4 HOH 232 1232 1232 HOH HOH A . D 4 HOH 233 1233 1233 HOH HOH A . D 4 HOH 234 1234 1234 HOH HOH A . D 4 HOH 235 1235 1235 HOH HOH A . D 4 HOH 236 1236 1236 HOH HOH A . D 4 HOH 237 1237 1237 HOH HOH A . D 4 HOH 238 1238 1238 HOH HOH A . D 4 HOH 239 1239 1239 HOH HOH A . D 4 HOH 240 1240 1240 HOH HOH A . D 4 HOH 241 1241 1241 HOH HOH A . D 4 HOH 242 1242 1242 HOH HOH A . D 4 HOH 243 1243 1243 HOH HOH A . D 4 HOH 244 1244 1244 HOH HOH A . D 4 HOH 245 1245 1245 HOH HOH A . D 4 HOH 246 1246 1246 HOH HOH A . D 4 HOH 247 1247 1247 HOH HOH A . D 4 HOH 248 1248 1248 HOH HOH A . D 4 HOH 249 1249 1249 HOH HOH A . D 4 HOH 250 1250 1250 HOH HOH A . D 4 HOH 251 1251 1251 HOH HOH A . D 4 HOH 252 1252 1252 HOH HOH A . D 4 HOH 253 1253 1253 HOH HOH A . D 4 HOH 254 1254 1254 HOH HOH A . D 4 HOH 255 1255 1255 HOH HOH A . D 4 HOH 256 1256 1256 HOH HOH A . D 4 HOH 257 1257 1257 HOH HOH A . D 4 HOH 258 1258 1258 HOH HOH A . D 4 HOH 259 1259 1259 HOH HOH A . D 4 HOH 260 1260 1260 HOH HOH A . D 4 HOH 261 1261 1261 HOH HOH A . D 4 HOH 262 1262 1262 HOH HOH A . D 4 HOH 263 1263 1263 HOH HOH A . D 4 HOH 264 1264 1264 HOH HOH A . D 4 HOH 265 1265 1265 HOH HOH A . D 4 HOH 266 1266 1266 HOH HOH A . D 4 HOH 267 1267 1267 HOH HOH A . D 4 HOH 268 1268 1268 HOH HOH A . D 4 HOH 269 1269 1269 HOH HOH A . D 4 HOH 270 1270 1270 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 1127 ? D HOH . 2 1 A HOH 1257 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-12-20 2 'Structure model' 1 1 2018-02-21 3 'Structure model' 2 0 2018-06-06 4 'Structure model' 2 1 2021-02-10 5 'Structure model' 2 2 2021-11-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Refinement description' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_deposit_group 2 3 'Structure model' atom_site 3 3 'Structure model' computing 4 3 'Structure model' pdbx_nonpoly_scheme 5 3 'Structure model' pdbx_poly_seq_scheme 6 3 'Structure model' refine 7 3 'Structure model' refine_hist 8 3 'Structure model' refine_ls_restr 9 3 'Structure model' refine_ls_shell 10 3 'Structure model' reflns 11 3 'Structure model' software 12 4 'Structure model' audit_author 13 4 'Structure model' citation_author 14 5 'Structure model' database_2 15 5 'Structure model' pdbx_deposit_group # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_deposit_group.group_type' 2 3 'Structure model' '_atom_site.occupancy' 3 3 'Structure model' '_pdbx_nonpoly_scheme.auth_mon_id' 4 3 'Structure model' '_pdbx_nonpoly_scheme.auth_seq_num' 5 3 'Structure model' '_pdbx_poly_seq_scheme.auth_mon_id' 6 3 'Structure model' '_refine.B_iso_max' 7 3 'Structure model' '_refine.B_iso_mean' 8 3 'Structure model' '_refine.B_iso_min' 9 3 'Structure model' '_refine.ls_R_factor_R_free' 10 3 'Structure model' '_refine.ls_R_factor_R_work' 11 3 'Structure model' '_refine.ls_R_factor_obs' 12 3 'Structure model' '_refine.ls_d_res_high' 13 3 'Structure model' '_refine.ls_d_res_low' 14 3 'Structure model' '_refine.ls_number_reflns_R_work' 15 3 'Structure model' '_refine.ls_percent_reflns_obs' 16 3 'Structure model' '_refine_hist.cycle_id' 17 3 'Structure model' '_refine_hist.d_res_high' 18 3 'Structure model' '_refine_hist.d_res_low' 19 3 'Structure model' '_refine_hist.number_atoms_total' 20 3 'Structure model' '_refine_hist.pdbx_B_iso_mean_ligand' 21 3 'Structure model' '_refine_hist.pdbx_B_iso_mean_solvent' 22 3 'Structure model' '_refine_hist.pdbx_number_atoms_protein' 23 3 'Structure model' '_refine_hist.pdbx_number_residues_total' 24 3 'Structure model' '_refine_ls_restr.dev_ideal' 25 3 'Structure model' '_refine_ls_restr.number' 26 3 'Structure model' '_refine_ls_restr.type' 27 3 'Structure model' '_refine_ls_shell.R_factor_R_free_error' 28 3 'Structure model' '_refine_ls_shell.number_reflns_all' 29 3 'Structure model' '_refine_ls_shell.pdbx_total_number_of_bins_used' 30 3 'Structure model' '_reflns.percent_possible_obs' 31 3 'Structure model' '_software.contact_author' 32 3 'Structure model' '_software.contact_author_email' 33 3 'Structure model' '_software.language' 34 3 'Structure model' '_software.location' 35 3 'Structure model' '_software.type' 36 4 'Structure model' '_audit_author.identifier_ORCID' 37 4 'Structure model' '_citation_author.identifier_ORCID' 38 5 'Structure model' '_database_2.pdbx_DOI' 39 5 'Structure model' '_database_2.pdbx_database_accession' 40 5 'Structure model' '_pdbx_deposit_group.group_description' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.12_2829 ? ? ? ? refinement ? ? ? 2 PDB_EXTRACT 3.23 'Dec. 13, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 SCALA . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 1182 ? ? O A HOH 1230 ? ? 2.07 2 1 O A HOH 1076 ? ? O A HOH 1236 ? ? 2.13 3 1 O A HOH 1119 ? ? O A HOH 1220 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 1195 ? ? 1_555 O A HOH 1195 ? ? 2_654 1.52 2 1 O A HOH 1200 ? ? 1_555 O A HOH 1200 ? ? 2_655 1.85 3 1 O A HOH 1268 ? ? 1_555 O A HOH 1269 ? ? 4_554 2.08 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 58 ? ? -120.45 -124.11 2 1 LYS A 177 ? ? -46.79 105.92 3 1 LYS A 202 ? ? -116.79 65.62 4 1 CYS A 206 ? ? 58.28 19.75 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ILE 0 ? CG1 ? A ILE 1 CG1 2 1 Y 1 A ILE 0 ? CG2 ? A ILE 1 CG2 3 1 Y 1 A ILE 0 ? CD1 ? A ILE 1 CD1 4 1 Y 1 A LYS 98 ? CG ? A LYS 99 CG 5 1 Y 1 A LYS 98 ? CD ? A LYS 99 CD 6 1 Y 1 A LYS 98 ? CE ? A LYS 99 CE 7 1 Y 1 A LYS 98 ? NZ ? A LYS 99 NZ # _pdbx_deposit_group.group_id G_1002040 _pdbx_deposit_group.group_description 'Ligand binding to Cathepsin S' _pdbx_deposit_group.group_title 'Ligand binding to Cathepsin S' _pdbx_deposit_group.group_type undefined # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;{(3S)-7-[(2-chloro-5-{5-(methylsulfonyl)-1-[3-(morpholin-4-yl)propyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridin-3-yl}phenyl)ethynyl]-1,2,3,4-tetrahydroisoquinolin-3-yl}(piperidin-1-yl)methanone ; BHJ 3 'SULFATE ION' SO4 4 water HOH #