data_5QCF # _entry.id 5QCF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5QCF pdb_00005qcf 10.2210/pdb5qcf/pdb WWPDB D_1001401772 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-12-20 2 'Structure model' 1 1 2018-02-21 3 'Structure model' 2 0 2018-06-06 4 'Structure model' 2 1 2021-02-10 5 'Structure model' 2 2 2021-11-17 6 'Structure model' 2 3 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Structure summary' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_deposit_group 2 3 'Structure model' atom_site 3 4 'Structure model' audit_author 4 4 'Structure model' citation_author 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_deposit_group 7 6 'Structure model' chem_comp_atom 8 6 'Structure model' chem_comp_bond 9 6 'Structure model' pdbx_entry_details 10 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_deposit_group.group_type' 2 3 'Structure model' '_atom_site.occupancy' 3 4 'Structure model' '_audit_author.identifier_ORCID' 4 4 'Structure model' '_citation_author.identifier_ORCID' 5 5 'Structure model' '_database_2.pdbx_DOI' 6 5 'Structure model' '_database_2.pdbx_database_accession' 7 5 'Structure model' '_pdbx_deposit_group.group_description' # _pdbx_database_status.entry_id 5QCF _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2017-08-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bembenek, S.D.' 1 ? 'Ameriks, M.K.' 2 ? 'Mirzadegan, T.' 3 ? 'Yang, H.' 4 ? 'Shao, C.' 5 0000-0001-6817-7476 'Burley, S.K.' 6 0000-0002-2487-9713 # _citation.id primary _citation.journal_abbrev 'To be published' _citation.title 'Crystal structure of human Cathepsin-S with bound ligand' _citation.year ? _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bembenek, S.D.' 1 ? primary 'Ameriks, M.K.' 2 ? primary 'Mirzadegan, T.' 3 ? primary 'Yang, H.' 4 ? primary 'Shao, C.' 5 0000-0001-6817-7476 primary 'Burley, S.K.' 6 0000-0002-2487-9713 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cathepsin S' 24516.471 1 3.4.22.27 C139S ? ? 2 non-polymer syn ;N-benzyl-1-{2-chloro-5-[(2-chloro-5-{5-(methylsulfonyl)-1-[3-(morpholin-4-yl)propyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridin-3-yl}phenyl)ethynyl]phenyl}methanamine ; 692.698 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 254 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ILPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII DNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEILQGGG ; _entity_poly.pdbx_seq_one_letter_code_can ;ILPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII DNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEILQGGG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;N-benzyl-1-{2-chloro-5-[(2-chloro-5-{5-(methylsulfonyl)-1-[3-(morpholin-4-yl)propyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridin-3-yl}phenyl)ethynyl]phenyl}methanamine ; BJD 3 'SULFATE ION' SO4 4 GLYCEROL GOL 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 LEU n 1 3 PRO n 1 4 ASP n 1 5 SER n 1 6 VAL n 1 7 ASP n 1 8 TRP n 1 9 ARG n 1 10 GLU n 1 11 LYS n 1 12 GLY n 1 13 CYS n 1 14 VAL n 1 15 THR n 1 16 GLU n 1 17 VAL n 1 18 LYS n 1 19 TYR n 1 20 GLN n 1 21 GLY n 1 22 SER n 1 23 CYS n 1 24 GLY n 1 25 ALA n 1 26 SER n 1 27 TRP n 1 28 ALA n 1 29 PHE n 1 30 SER n 1 31 ALA n 1 32 VAL n 1 33 GLY n 1 34 ALA n 1 35 LEU n 1 36 GLU n 1 37 ALA n 1 38 GLN n 1 39 LEU n 1 40 LYS n 1 41 LEU n 1 42 LYS n 1 43 THR n 1 44 GLY n 1 45 LYS n 1 46 LEU n 1 47 VAL n 1 48 SER n 1 49 LEU n 1 50 SER n 1 51 ALA n 1 52 GLN n 1 53 ASN n 1 54 LEU n 1 55 VAL n 1 56 ASP n 1 57 CYS n 1 58 SER n 1 59 THR n 1 60 GLU n 1 61 LYS n 1 62 TYR n 1 63 GLY n 1 64 ASN n 1 65 LYS n 1 66 GLY n 1 67 CYS n 1 68 ASN n 1 69 GLY n 1 70 GLY n 1 71 PHE n 1 72 MET n 1 73 THR n 1 74 THR n 1 75 ALA n 1 76 PHE n 1 77 GLN n 1 78 TYR n 1 79 ILE n 1 80 ILE n 1 81 ASP n 1 82 ASN n 1 83 LYS n 1 84 GLY n 1 85 ILE n 1 86 ASP n 1 87 SER n 1 88 ASP n 1 89 ALA n 1 90 SER n 1 91 TYR n 1 92 PRO n 1 93 TYR n 1 94 LYS n 1 95 ALA n 1 96 MET n 1 97 ASP n 1 98 GLN n 1 99 LYS n 1 100 CYS n 1 101 GLN n 1 102 TYR n 1 103 ASP n 1 104 SER n 1 105 LYS n 1 106 TYR n 1 107 ARG n 1 108 ALA n 1 109 ALA n 1 110 THR n 1 111 CYS n 1 112 SER n 1 113 LYS n 1 114 TYR n 1 115 THR n 1 116 GLU n 1 117 LEU n 1 118 PRO n 1 119 TYR n 1 120 GLY n 1 121 ARG n 1 122 GLU n 1 123 ASP n 1 124 VAL n 1 125 LEU n 1 126 LYS n 1 127 GLU n 1 128 ALA n 1 129 VAL n 1 130 ALA n 1 131 ASN n 1 132 LYS n 1 133 GLY n 1 134 PRO n 1 135 VAL n 1 136 SER n 1 137 VAL n 1 138 GLY n 1 139 VAL n 1 140 ASP n 1 141 ALA n 1 142 ARG n 1 143 HIS n 1 144 PRO n 1 145 SER n 1 146 PHE n 1 147 PHE n 1 148 LEU n 1 149 TYR n 1 150 ARG n 1 151 SER n 1 152 GLY n 1 153 VAL n 1 154 TYR n 1 155 TYR n 1 156 GLU n 1 157 PRO n 1 158 SER n 1 159 CYS n 1 160 THR n 1 161 GLN n 1 162 ASN n 1 163 VAL n 1 164 ASN n 1 165 HIS n 1 166 GLY n 1 167 VAL n 1 168 LEU n 1 169 VAL n 1 170 VAL n 1 171 GLY n 1 172 TYR n 1 173 GLY n 1 174 ASP n 1 175 LEU n 1 176 ASN n 1 177 GLY n 1 178 LYS n 1 179 GLU n 1 180 TYR n 1 181 TRP n 1 182 LEU n 1 183 VAL n 1 184 LYS n 1 185 ASN n 1 186 SER n 1 187 TRP n 1 188 GLY n 1 189 HIS n 1 190 ASN n 1 191 PHE n 1 192 GLY n 1 193 GLU n 1 194 GLU n 1 195 GLY n 1 196 TYR n 1 197 ILE n 1 198 ARG n 1 199 MET n 1 200 ALA n 1 201 ARG n 1 202 ASN n 1 203 LYS n 1 204 GLY n 1 205 ASN n 1 206 HIS n 1 207 CYS n 1 208 GLY n 1 209 ILE n 1 210 ALA n 1 211 SER n 1 212 PHE n 1 213 PRO n 1 214 SER n 1 215 TYR n 1 216 PRO n 1 217 GLU n 1 218 ILE n 1 219 LEU n 1 220 GLN n 1 221 GLY n 1 222 GLY n 1 223 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 223 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CTSS _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type baculovirus _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BJD non-polymer . ;N-benzyl-1-{2-chloro-5-[(2-chloro-5-{5-(methylsulfonyl)-1-[3-(morpholin-4-yl)propyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridin-3-yl}phenyl)ethynyl]phenyl}methanamine ; ? 'C36 H39 Cl2 N5 O3 S' 692.698 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 0 ? ? ? A . n A 1 2 LEU 2 1 1 LEU LEU A . n A 1 3 PRO 3 2 2 PRO PRO A . n A 1 4 ASP 4 3 3 ASP ASP A . n A 1 5 SER 5 4 4 SER SER A . n A 1 6 VAL 6 5 5 VAL VAL A . n A 1 7 ASP 7 6 6 ASP ASP A . n A 1 8 TRP 8 7 7 TRP TRP A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 GLU 10 9 9 GLU GLU A . n A 1 11 LYS 11 10 10 LYS LYS A . n A 1 12 GLY 12 11 11 GLY GLY A . n A 1 13 CYS 13 12 12 CYS CYS A . n A 1 14 VAL 14 13 13 VAL VAL A . n A 1 15 THR 15 14 14 THR THR A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 LYS 18 17 17 LYS LYS A . n A 1 19 TYR 19 18 18 TYR TYR A . n A 1 20 GLN 20 19 19 GLN GLN A . n A 1 21 GLY 21 20 20 GLY GLY A . n A 1 22 SER 22 21 21 SER SER A . n A 1 23 CYS 23 22 22 CYS CYS A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 SER 26 25 25 SER SER A . n A 1 27 TRP 27 26 26 TRP TRP A . n A 1 28 ALA 28 27 27 ALA ALA A . n A 1 29 PHE 29 28 28 PHE PHE A . n A 1 30 SER 30 29 29 SER SER A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 VAL 32 31 31 VAL VAL A . n A 1 33 GLY 33 32 32 GLY GLY A . n A 1 34 ALA 34 33 33 ALA ALA A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 GLU 36 35 35 GLU GLU A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 GLN 38 37 37 GLN GLN A . n A 1 39 LEU 39 38 38 LEU LEU A . n A 1 40 LYS 40 39 39 LYS LYS A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 LYS 42 41 41 LYS LYS A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 LYS 45 44 44 LYS LYS A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 VAL 47 46 46 VAL VAL A . n A 1 48 SER 48 47 47 SER SER A . n A 1 49 LEU 49 48 48 LEU LEU A . n A 1 50 SER 50 49 49 SER SER A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 GLN 52 51 51 GLN GLN A . n A 1 53 ASN 53 52 52 ASN ASN A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 VAL 55 54 54 VAL VAL A . n A 1 56 ASP 56 55 55 ASP ASP A . n A 1 57 CYS 57 56 56 CYS CYS A . n A 1 58 SER 58 57 57 SER SER A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 GLU 60 59 59 GLU GLU A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 TYR 62 61 61 TYR TYR A . n A 1 63 GLY 63 62 62 GLY GLY A . n A 1 64 ASN 64 63 63 ASN ASN A . n A 1 65 LYS 65 64 64 LYS LYS A . n A 1 66 GLY 66 65 65 GLY GLY A . n A 1 67 CYS 67 66 66 CYS CYS A . n A 1 68 ASN 68 67 67 ASN ASN A . n A 1 69 GLY 69 68 68 GLY GLY A . n A 1 70 GLY 70 69 69 GLY GLY A . n A 1 71 PHE 71 70 70 PHE PHE A . n A 1 72 MET 72 71 71 MET MET A . n A 1 73 THR 73 72 72 THR THR A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 ALA 75 74 74 ALA ALA A . n A 1 76 PHE 76 75 75 PHE PHE A . n A 1 77 GLN 77 76 76 GLN GLN A . n A 1 78 TYR 78 77 77 TYR TYR A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 ILE 80 79 79 ILE ILE A . n A 1 81 ASP 81 80 80 ASP ASP A . n A 1 82 ASN 82 81 81 ASN ASN A . n A 1 83 LYS 83 82 82 LYS LYS A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 ASP 86 85 85 ASP ASP A . n A 1 87 SER 87 86 86 SER SER A . n A 1 88 ASP 88 87 87 ASP ASP A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 TYR 91 90 90 TYR TYR A . n A 1 92 PRO 92 91 91 PRO PRO A . n A 1 93 TYR 93 92 92 TYR TYR A . n A 1 94 LYS 94 93 93 LYS LYS A . n A 1 95 ALA 95 94 94 ALA ALA A . n A 1 96 MET 96 95 95 MET MET A . n A 1 97 ASP 97 96 96 ASP ASP A . n A 1 98 GLN 98 97 97 GLN GLN A . n A 1 99 LYS 99 98 98 LYS LYS A . n A 1 100 CYS 100 99 99 CYS CYS A . n A 1 101 GLN 101 100 100 GLN GLN A . n A 1 102 TYR 102 101 101 TYR TYR A . n A 1 103 ASP 103 102 102 ASP ASP A . n A 1 104 SER 104 103 103 SER SER A . n A 1 105 LYS 105 104 104 LYS LYS A . n A 1 106 TYR 106 105 105 TYR TYR A . n A 1 107 ARG 107 106 106 ARG ARG A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 ALA 109 108 108 ALA ALA A . n A 1 110 THR 110 109 109 THR THR A . n A 1 111 CYS 111 110 110 CYS CYS A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 LYS 113 112 112 LYS LYS A . n A 1 114 TYR 114 113 113 TYR TYR A . n A 1 115 THR 115 114 114 THR THR A . n A 1 116 GLU 116 115 115 GLU GLU A . n A 1 117 LEU 117 116 116 LEU LEU A . n A 1 118 PRO 118 117 117 PRO PRO A . n A 1 119 TYR 119 118 118 TYR TYR A . n A 1 120 GLY 120 119 119 GLY GLY A . n A 1 121 ARG 121 120 120 ARG ARG A . n A 1 122 GLU 122 121 121 GLU GLU A . n A 1 123 ASP 123 122 122 ASP ASP A . n A 1 124 VAL 124 123 123 VAL VAL A . n A 1 125 LEU 125 124 124 LEU LEU A . n A 1 126 LYS 126 125 125 LYS LYS A . n A 1 127 GLU 127 126 126 GLU GLU A . n A 1 128 ALA 128 127 127 ALA ALA A . n A 1 129 VAL 129 128 128 VAL VAL A . n A 1 130 ALA 130 129 129 ALA ALA A . n A 1 131 ASN 131 130 130 ASN ASN A . n A 1 132 LYS 132 131 131 LYS LYS A . n A 1 133 GLY 133 132 132 GLY GLY A . n A 1 134 PRO 134 133 133 PRO PRO A . n A 1 135 VAL 135 134 134 VAL VAL A . n A 1 136 SER 136 135 135 SER SER A . n A 1 137 VAL 137 136 136 VAL VAL A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 VAL 139 138 138 VAL VAL A . n A 1 140 ASP 140 139 139 ASP ASP A . n A 1 141 ALA 141 140 140 ALA ALA A . n A 1 142 ARG 142 141 141 ARG ALA A . n A 1 143 HIS 143 142 142 HIS HIS A . n A 1 144 PRO 144 143 143 PRO PRO A . n A 1 145 SER 145 144 144 SER SER A . n A 1 146 PHE 146 145 145 PHE PHE A . n A 1 147 PHE 147 146 146 PHE PHE A . n A 1 148 LEU 148 147 147 LEU LEU A . n A 1 149 TYR 149 148 148 TYR TYR A . n A 1 150 ARG 150 149 149 ARG ARG A . n A 1 151 SER 151 150 150 SER SER A . n A 1 152 GLY 152 151 151 GLY GLY A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 TYR 154 153 153 TYR TYR A . n A 1 155 TYR 155 154 154 TYR TYR A . n A 1 156 GLU 156 155 155 GLU GLU A . n A 1 157 PRO 157 156 156 PRO PRO A . n A 1 158 SER 158 157 157 SER SER A . n A 1 159 CYS 159 158 158 CYS CYS A . n A 1 160 THR 160 159 159 THR THR A . n A 1 161 GLN 161 160 160 GLN GLN A . n A 1 162 ASN 162 161 161 ASN ASN A . n A 1 163 VAL 163 162 162 VAL VAL A . n A 1 164 ASN 164 163 163 ASN ASN A . n A 1 165 HIS 165 164 164 HIS HIS A . n A 1 166 GLY 166 165 165 GLY GLY A . n A 1 167 VAL 167 166 166 VAL VAL A . n A 1 168 LEU 168 167 167 LEU LEU A . n A 1 169 VAL 169 168 168 VAL VAL A . n A 1 170 VAL 170 169 169 VAL VAL A . n A 1 171 GLY 171 170 170 GLY GLY A . n A 1 172 TYR 172 171 171 TYR TYR A . n A 1 173 GLY 173 172 172 GLY GLY A . n A 1 174 ASP 174 173 173 ASP ASP A . n A 1 175 LEU 175 174 174 LEU LEU A . n A 1 176 ASN 176 175 175 ASN ASN A . n A 1 177 GLY 177 176 176 GLY GLY A . n A 1 178 LYS 178 177 177 LYS LYS A . n A 1 179 GLU 179 178 178 GLU GLU A . n A 1 180 TYR 180 179 179 TYR TYR A . n A 1 181 TRP 181 180 180 TRP TRP A . n A 1 182 LEU 182 181 181 LEU LEU A . n A 1 183 VAL 183 182 182 VAL VAL A . n A 1 184 LYS 184 183 183 LYS LYS A . n A 1 185 ASN 185 184 184 ASN ASN A . n A 1 186 SER 186 185 185 SER SER A . n A 1 187 TRP 187 186 186 TRP TRP A . n A 1 188 GLY 188 187 187 GLY GLY A . n A 1 189 HIS 189 188 188 HIS HIS A . n A 1 190 ASN 190 189 189 ASN ASN A . n A 1 191 PHE 191 190 190 PHE PHE A . n A 1 192 GLY 192 191 191 GLY GLY A . n A 1 193 GLU 193 192 192 GLU GLU A . n A 1 194 GLU 194 193 193 GLU GLU A . n A 1 195 GLY 195 194 194 GLY GLY A . n A 1 196 TYR 196 195 195 TYR TYR A . n A 1 197 ILE 197 196 196 ILE ILE A . n A 1 198 ARG 198 197 197 ARG ARG A . n A 1 199 MET 199 198 198 MET MET A . n A 1 200 ALA 200 199 199 ALA ALA A . n A 1 201 ARG 201 200 200 ARG ARG A . n A 1 202 ASN 202 201 201 ASN ASN A . n A 1 203 LYS 203 202 202 LYS LYS A . n A 1 204 GLY 204 203 203 GLY GLY A . n A 1 205 ASN 205 204 204 ASN ASN A . n A 1 206 HIS 206 205 205 HIS HIS A . n A 1 207 CYS 207 206 206 CYS CYS A . n A 1 208 GLY 208 207 207 GLY GLY A . n A 1 209 ILE 209 208 208 ILE ILE A . n A 1 210 ALA 210 209 209 ALA ALA A . n A 1 211 SER 211 210 210 SER SER A . n A 1 212 PHE 212 211 211 PHE PHE A . n A 1 213 PRO 213 212 212 PRO PRO A . n A 1 214 SER 214 213 213 SER SER A . n A 1 215 TYR 215 214 214 TYR TYR A . n A 1 216 PRO 216 215 215 PRO PRO A . n A 1 217 GLU 217 216 216 GLU GLU A . n A 1 218 ILE 218 217 217 ILE ILE A . n A 1 219 LEU 219 218 218 LEU LEU A . n A 1 220 GLN 220 219 219 GLN GLN A . n A 1 221 GLY 221 220 220 GLY GLY A . n A 1 222 GLY 222 221 ? ? ? A . n A 1 223 GLY 223 222 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BJD 1 901 901 BJD 868 A . C 3 SO4 1 902 801 SO4 SO4 A . D 4 GOL 1 903 802 GOL GOL A . E 5 HOH 1 1001 124 HOH HOH A . E 5 HOH 2 1002 177 HOH HOH A . E 5 HOH 3 1003 49 HOH HOH A . E 5 HOH 4 1004 126 HOH HOH A . E 5 HOH 5 1005 231 HOH HOH A . E 5 HOH 6 1006 64 HOH HOH A . E 5 HOH 7 1007 130 HOH HOH A . E 5 HOH 8 1008 50 HOH HOH A . E 5 HOH 9 1009 138 HOH HOH A . E 5 HOH 10 1010 39 HOH HOH A . E 5 HOH 11 1011 127 HOH HOH A . E 5 HOH 12 1012 32 HOH HOH A . E 5 HOH 13 1013 208 HOH HOH A . E 5 HOH 14 1014 128 HOH HOH A . E 5 HOH 15 1015 72 HOH HOH A . E 5 HOH 16 1016 175 HOH HOH A . E 5 HOH 17 1017 75 HOH HOH A . E 5 HOH 18 1018 52 HOH HOH A . E 5 HOH 19 1019 188 HOH HOH A . E 5 HOH 20 1020 53 HOH HOH A . E 5 HOH 21 1021 122 HOH HOH A . E 5 HOH 22 1022 98 HOH HOH A . E 5 HOH 23 1023 28 HOH HOH A . E 5 HOH 24 1024 77 HOH HOH A . E 5 HOH 25 1025 113 HOH HOH A . E 5 HOH 26 1026 56 HOH HOH A . E 5 HOH 27 1027 4 HOH HOH A . E 5 HOH 28 1028 226 HOH HOH A . E 5 HOH 29 1029 161 HOH HOH A . E 5 HOH 30 1030 91 HOH HOH A . E 5 HOH 31 1031 18 HOH HOH A . E 5 HOH 32 1032 74 HOH HOH A . E 5 HOH 33 1033 129 HOH HOH A . E 5 HOH 34 1034 40 HOH HOH A . E 5 HOH 35 1035 136 HOH HOH A . E 5 HOH 36 1036 7 HOH HOH A . E 5 HOH 37 1037 25 HOH HOH A . E 5 HOH 38 1038 13 HOH HOH A . E 5 HOH 39 1039 60 HOH HOH A . E 5 HOH 40 1040 235 HOH HOH A . E 5 HOH 41 1041 204 HOH HOH A . E 5 HOH 42 1042 140 HOH HOH A . E 5 HOH 43 1043 210 HOH HOH A . E 5 HOH 44 1044 73 HOH HOH A . E 5 HOH 45 1045 252 HOH HOH A . E 5 HOH 46 1046 41 HOH HOH A . E 5 HOH 47 1047 86 HOH HOH A . E 5 HOH 48 1048 44 HOH HOH A . E 5 HOH 49 1049 245 HOH HOH A . E 5 HOH 50 1050 66 HOH HOH A . E 5 HOH 51 1051 82 HOH HOH A . E 5 HOH 52 1052 38 HOH HOH A . E 5 HOH 53 1053 100 HOH HOH A . E 5 HOH 54 1054 229 HOH HOH A . E 5 HOH 55 1055 146 HOH HOH A . E 5 HOH 56 1056 15 HOH HOH A . E 5 HOH 57 1057 238 HOH HOH A . E 5 HOH 58 1058 20 HOH HOH A . E 5 HOH 59 1059 26 HOH HOH A . E 5 HOH 60 1060 51 HOH HOH A . E 5 HOH 61 1061 256 HOH HOH A . E 5 HOH 62 1062 132 HOH HOH A . E 5 HOH 63 1063 94 HOH HOH A . E 5 HOH 64 1064 164 HOH HOH A . E 5 HOH 65 1065 79 HOH HOH A . E 5 HOH 66 1066 24 HOH HOH A . E 5 HOH 67 1067 69 HOH HOH A . E 5 HOH 68 1068 168 HOH HOH A . E 5 HOH 69 1069 88 HOH HOH A . E 5 HOH 70 1070 223 HOH HOH A . E 5 HOH 71 1071 216 HOH HOH A . E 5 HOH 72 1072 137 HOH HOH A . E 5 HOH 73 1073 33 HOH HOH A . E 5 HOH 74 1074 3 HOH HOH A . E 5 HOH 75 1075 170 HOH HOH A . E 5 HOH 76 1076 92 HOH HOH A . E 5 HOH 77 1077 35 HOH HOH A . E 5 HOH 78 1078 90 HOH HOH A . E 5 HOH 79 1079 213 HOH HOH A . E 5 HOH 80 1080 36 HOH HOH A . E 5 HOH 81 1081 84 HOH HOH A . E 5 HOH 82 1082 23 HOH HOH A . E 5 HOH 83 1083 110 HOH HOH A . E 5 HOH 84 1084 68 HOH HOH A . E 5 HOH 85 1085 83 HOH HOH A . E 5 HOH 86 1086 254 HOH HOH A . E 5 HOH 87 1087 57 HOH HOH A . E 5 HOH 88 1088 198 HOH HOH A . E 5 HOH 89 1089 16 HOH HOH A . E 5 HOH 90 1090 6 HOH HOH A . E 5 HOH 91 1091 12 HOH HOH A . E 5 HOH 92 1092 22 HOH HOH A . E 5 HOH 93 1093 107 HOH HOH A . E 5 HOH 94 1094 47 HOH HOH A . E 5 HOH 95 1095 157 HOH HOH A . E 5 HOH 96 1096 14 HOH HOH A . E 5 HOH 97 1097 143 HOH HOH A . E 5 HOH 98 1098 63 HOH HOH A . E 5 HOH 99 1099 106 HOH HOH A . E 5 HOH 100 1100 19 HOH HOH A . E 5 HOH 101 1101 45 HOH HOH A . E 5 HOH 102 1102 135 HOH HOH A . E 5 HOH 103 1103 17 HOH HOH A . E 5 HOH 104 1104 144 HOH HOH A . E 5 HOH 105 1105 185 HOH HOH A . E 5 HOH 106 1106 61 HOH HOH A . E 5 HOH 107 1107 48 HOH HOH A . E 5 HOH 108 1108 42 HOH HOH A . E 5 HOH 109 1109 54 HOH HOH A . E 5 HOH 110 1110 193 HOH HOH A . E 5 HOH 111 1111 249 HOH HOH A . E 5 HOH 112 1112 258 HOH HOH A . E 5 HOH 113 1113 209 HOH HOH A . E 5 HOH 114 1114 117 HOH HOH A . E 5 HOH 115 1115 10 HOH HOH A . E 5 HOH 116 1116 101 HOH HOH A . E 5 HOH 117 1117 141 HOH HOH A . E 5 HOH 118 1118 5 HOH HOH A . E 5 HOH 119 1119 200 HOH HOH A . E 5 HOH 120 1120 142 HOH HOH A . E 5 HOH 121 1121 145 HOH HOH A . E 5 HOH 122 1122 196 HOH HOH A . E 5 HOH 123 1123 112 HOH HOH A . E 5 HOH 124 1124 1 HOH HOH A . E 5 HOH 125 1125 2 HOH HOH A . E 5 HOH 126 1126 180 HOH HOH A . E 5 HOH 127 1127 162 HOH HOH A . E 5 HOH 128 1128 134 HOH HOH A . E 5 HOH 129 1129 151 HOH HOH A . E 5 HOH 130 1130 104 HOH HOH A . E 5 HOH 131 1131 169 HOH HOH A . E 5 HOH 132 1132 8 HOH HOH A . E 5 HOH 133 1133 236 HOH HOH A . E 5 HOH 134 1134 154 HOH HOH A . E 5 HOH 135 1135 70 HOH HOH A . E 5 HOH 136 1136 240 HOH HOH A . E 5 HOH 137 1137 87 HOH HOH A . E 5 HOH 138 1138 29 HOH HOH A . E 5 HOH 139 1139 147 HOH HOH A . E 5 HOH 140 1140 96 HOH HOH A . E 5 HOH 141 1141 120 HOH HOH A . E 5 HOH 142 1142 103 HOH HOH A . E 5 HOH 143 1143 125 HOH HOH A . E 5 HOH 144 1144 62 HOH HOH A . E 5 HOH 145 1145 58 HOH HOH A . E 5 HOH 146 1146 163 HOH HOH A . E 5 HOH 147 1147 78 HOH HOH A . E 5 HOH 148 1148 95 HOH HOH A . E 5 HOH 149 1149 59 HOH HOH A . E 5 HOH 150 1150 67 HOH HOH A . E 5 HOH 151 1151 85 HOH HOH A . E 5 HOH 152 1152 11 HOH HOH A . E 5 HOH 153 1153 207 HOH HOH A . E 5 HOH 154 1154 131 HOH HOH A . E 5 HOH 155 1155 27 HOH HOH A . E 5 HOH 156 1156 99 HOH HOH A . E 5 HOH 157 1157 119 HOH HOH A . E 5 HOH 158 1158 81 HOH HOH A . E 5 HOH 159 1159 237 HOH HOH A . E 5 HOH 160 1160 80 HOH HOH A . E 5 HOH 161 1161 31 HOH HOH A . E 5 HOH 162 1162 211 HOH HOH A . E 5 HOH 163 1163 89 HOH HOH A . E 5 HOH 164 1164 102 HOH HOH A . E 5 HOH 165 1165 215 HOH HOH A . E 5 HOH 166 1166 149 HOH HOH A . E 5 HOH 167 1167 190 HOH HOH A . E 5 HOH 168 1168 65 HOH HOH A . E 5 HOH 169 1169 55 HOH HOH A . E 5 HOH 170 1170 239 HOH HOH A . E 5 HOH 171 1171 30 HOH HOH A . E 5 HOH 172 1172 21 HOH HOH A . E 5 HOH 173 1173 111 HOH HOH A . E 5 HOH 174 1174 250 HOH HOH A . E 5 HOH 175 1175 109 HOH HOH A . E 5 HOH 176 1176 230 HOH HOH A . E 5 HOH 177 1177 221 HOH HOH A . E 5 HOH 178 1178 121 HOH HOH A . E 5 HOH 179 1179 201 HOH HOH A . E 5 HOH 180 1180 123 HOH HOH A . E 5 HOH 181 1181 174 HOH HOH A . E 5 HOH 182 1182 76 HOH HOH A . E 5 HOH 183 1183 194 HOH HOH A . E 5 HOH 184 1184 172 HOH HOH A . E 5 HOH 185 1185 118 HOH HOH A . E 5 HOH 186 1186 46 HOH HOH A . E 5 HOH 187 1187 214 HOH HOH A . E 5 HOH 188 1188 165 HOH HOH A . E 5 HOH 189 1189 150 HOH HOH A . E 5 HOH 190 1190 199 HOH HOH A . E 5 HOH 191 1191 37 HOH HOH A . E 5 HOH 192 1192 108 HOH HOH A . E 5 HOH 193 1193 257 HOH HOH A . E 5 HOH 194 1194 105 HOH HOH A . E 5 HOH 195 1195 139 HOH HOH A . E 5 HOH 196 1196 166 HOH HOH A . E 5 HOH 197 1197 133 HOH HOH A . E 5 HOH 198 1198 266 HOH HOH A . E 5 HOH 199 1199 152 HOH HOH A . E 5 HOH 200 1200 9 HOH HOH A . E 5 HOH 201 1201 34 HOH HOH A . E 5 HOH 202 1202 202 HOH HOH A . E 5 HOH 203 1203 206 HOH HOH A . E 5 HOH 204 1204 43 HOH HOH A . E 5 HOH 205 1205 153 HOH HOH A . E 5 HOH 206 1206 160 HOH HOH A . E 5 HOH 207 1207 265 HOH HOH A . E 5 HOH 208 1208 181 HOH HOH A . E 5 HOH 209 1209 212 HOH HOH A . E 5 HOH 210 1210 205 HOH HOH A . E 5 HOH 211 1211 224 HOH HOH A . E 5 HOH 212 1212 233 HOH HOH A . E 5 HOH 213 1213 148 HOH HOH A . E 5 HOH 214 1214 264 HOH HOH A . E 5 HOH 215 1215 71 HOH HOH A . E 5 HOH 216 1216 218 HOH HOH A . E 5 HOH 217 1217 115 HOH HOH A . E 5 HOH 218 1218 232 HOH HOH A . E 5 HOH 219 1219 219 HOH HOH A . E 5 HOH 220 1220 171 HOH HOH A . E 5 HOH 221 1221 173 HOH HOH A . E 5 HOH 222 1222 225 HOH HOH A . E 5 HOH 223 1223 246 HOH HOH A . E 5 HOH 224 1224 203 HOH HOH A . E 5 HOH 225 1225 114 HOH HOH A . E 5 HOH 226 1226 220 HOH HOH A . E 5 HOH 227 1227 184 HOH HOH A . E 5 HOH 228 1228 159 HOH HOH A . E 5 HOH 229 1229 259 HOH HOH A . E 5 HOH 230 1230 97 HOH HOH A . E 5 HOH 231 1231 228 HOH HOH A . E 5 HOH 232 1232 241 HOH HOH A . E 5 HOH 233 1233 167 HOH HOH A . E 5 HOH 234 1234 93 HOH HOH A . E 5 HOH 235 1235 176 HOH HOH A . E 5 HOH 236 1236 158 HOH HOH A . E 5 HOH 237 1237 183 HOH HOH A . E 5 HOH 238 1238 261 HOH HOH A . E 5 HOH 239 1239 156 HOH HOH A . E 5 HOH 240 1240 197 HOH HOH A . E 5 HOH 241 1241 227 HOH HOH A . E 5 HOH 242 1242 189 HOH HOH A . E 5 HOH 243 1243 182 HOH HOH A . E 5 HOH 244 1244 217 HOH HOH A . E 5 HOH 245 1245 186 HOH HOH A . E 5 HOH 246 1246 191 HOH HOH A . E 5 HOH 247 1247 116 HOH HOH A . E 5 HOH 248 1248 178 HOH HOH A . E 5 HOH 249 1249 187 HOH HOH A . E 5 HOH 250 1250 222 HOH HOH A . E 5 HOH 251 1251 242 HOH HOH A . E 5 HOH 252 1252 195 HOH HOH A . E 5 HOH 253 1253 155 HOH HOH A . E 5 HOH 254 1254 192 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 141 ? CG ? A ARG 142 CG 2 1 Y 1 A ARG 141 ? CD ? A ARG 142 CD 3 1 Y 1 A ARG 141 ? NE ? A ARG 142 NE 4 1 Y 1 A ARG 141 ? CZ ? A ARG 142 CZ 5 1 Y 1 A ARG 141 ? NH1 ? A ARG 142 NH1 6 1 Y 1 A ARG 141 ? NH2 ? A ARG 142 NH2 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.8.0158 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.23 'Dec. 13, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 SCALA . ? ? ? ? 'data scaling' ? ? ? # _cell.entry_id 5QCF _cell.length_a 78.891 _cell.length_b 73.635 _cell.length_c 44.716 _cell.angle_alpha 90.000 _cell.angle_beta 104.500 _cell.angle_gamma 90.000 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QCF _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.crystals_number 1 _exptl.entry_id 5QCF _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.60 _exptl_crystal.density_percent_sol 52.65 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.50 _exptl_crystal_grow.pdbx_details ;100MM SODIUM ACETATE PH 4.5, 200MM AMMONIUM ACETATE, 25% PEG 8000. PROTEIN CONCENTRATION 7 MG/ML, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944' _diffrn_detector.pdbx_collection_date 2006-05-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54178 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 5QCF _reflns.d_resolution_high 2.1000 _reflns.d_resolution_low 30.9900 _reflns.number_obs 13769 _reflns.percent_possible_obs 99.5100 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? # _refine.entry_id 5QCF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.1000 _refine.ls_d_res_low 30.9900 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.5100 _refine.ls_number_reflns_obs 13769 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1592 _refine.ls_R_factor_R_work 0.1576 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1874 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 729 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.8780 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0800 _refine.aniso_B[2][2] 0.0300 _refine.aniso_B[3][3] 0.0500 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0300 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9560 _refine.correlation_coeff_Fo_to_Fc_free 0.9350 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.2000 _refine.pdbx_overall_ESU_R_Free 0.1530 _refine.overall_SU_ML 0.1100 _refine.overall_SU_B 4.2510 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 55.490 _refine.B_iso_min 8.130 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.1000 _refine_hist.d_res_low 30.9900 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 254 _refine_hist.number_atoms_total 2012 _refine_hist.pdbx_number_residues_total 220 _refine_hist.pdbx_B_iso_mean_ligand 22.63 _refine_hist.pdbx_B_iso_mean_solvent 30.25 _refine_hist.pdbx_number_atoms_protein 1700 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1806 0.011 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1580 0.003 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2446 1.337 1.928 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3685 0.939 2.956 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 219 5.941 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 80 34.989 24.625 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 280 13.371 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 6.234 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 244 0.079 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2020 0.006 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 377 0.001 0.020 ? ? # _refine_ls_shell.d_res_high 2.0980 _refine_ls_shell.d_res_low 2.1520 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 94.8400 _refine_ls_shell.number_reflns_R_work 959 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2270 _refine_ls_shell.R_factor_R_free 0.2850 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 52 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.number_reflns_all 1011 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 5QCF _struct.title 'Crystal structure of human Cathepsin-S with bound ligand' _struct.pdbx_model_details 'Structures re-refined for D3R docking challenge' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5QCF _struct_keywords.text 'D3R, Cathepsin S, Ligand Docking, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CATS_HUMAN _struct_ref.pdbx_db_accession P25774 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII DNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI ; _struct_ref.pdbx_align_begin 114 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5QCF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 218 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P25774 _struct_ref_seq.db_align_beg 114 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 331 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 217 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5QCF SER A 26 ? UNP P25774 CYS 139 'engineered mutation' 25 1 1 5QCF LEU A 219 ? UNP P25774 ? ? 'expression tag' 218 2 1 5QCF GLN A 220 ? UNP P25774 ? ? 'expression tag' 219 3 1 5QCF GLY A 221 ? UNP P25774 ? ? 'expression tag' 220 4 1 5QCF GLY A 222 ? UNP P25774 ? ? 'expression tag' 221 5 1 5QCF GLY A 223 ? UNP P25774 ? ? 'expression tag' 222 6 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E 2 1 A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 9 ? GLY A 12 ? ARG A 8 GLY A 11 5 ? 4 HELX_P HELX_P2 AA2 ALA A 25 ? GLY A 44 ? ALA A 24 GLY A 43 1 ? 20 HELX_P HELX_P3 AA3 SER A 50 ? SER A 58 ? SER A 49 SER A 57 1 ? 9 HELX_P HELX_P4 AA4 THR A 59 ? GLY A 63 ? THR A 58 GLY A 62 5 ? 5 HELX_P HELX_P5 AA5 LYS A 65 ? GLY A 69 ? LYS A 64 GLY A 68 5 ? 5 HELX_P HELX_P6 AA6 PHE A 71 ? LYS A 83 ? PHE A 70 LYS A 82 1 ? 13 HELX_P HELX_P7 AA7 ASP A 103 ? LYS A 105 ? ASP A 102 LYS A 104 5 ? 3 HELX_P HELX_P8 AA8 ARG A 121 ? LYS A 132 ? ARG A 120 LYS A 131 1 ? 12 HELX_P HELX_P9 AA9 HIS A 143 ? TYR A 149 ? HIS A 142 TYR A 148 1 ? 7 HELX_P HELX_P10 AB1 ASN A 205 ? ILE A 209 ? ASN A 204 ILE A 208 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 67 SG ? ? A CYS 22 A CYS 66 1_555 ? ? ? ? ? ? ? 2.063 ? ? disulf2 disulf ? ? A CYS 57 SG ? ? ? 1_555 A CYS 100 SG ? ? A CYS 56 A CYS 99 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf3 disulf ? ? A CYS 159 SG ? ? ? 1_555 A CYS 207 SG ? ? A CYS 158 A CYS 206 1_555 ? ? ? ? ? ? ? 2.021 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 23 ? CYS A 67 ? CYS A 22 ? 1_555 CYS A 66 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 57 ? CYS A 100 ? CYS A 56 ? 1_555 CYS A 99 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 159 ? CYS A 207 ? CYS A 158 ? 1_555 CYS A 206 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 5 ? AA3 ? 2 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 6 ? ASP A 7 ? VAL A 5 ASP A 6 AA1 2 GLY A 166 ? LEU A 175 ? GLY A 165 LEU A 174 AA1 3 VAL A 135 ? GLY A 138 ? VAL A 134 GLY A 137 AA2 1 VAL A 6 ? ASP A 7 ? VAL A 5 ASP A 6 AA2 2 GLY A 166 ? LEU A 175 ? GLY A 165 LEU A 174 AA2 3 LYS A 178 ? LYS A 184 ? LYS A 177 LYS A 183 AA2 4 TYR A 196 ? ALA A 200 ? TYR A 195 ALA A 199 AA2 5 VAL A 153 ? TYR A 154 ? VAL A 152 TYR A 153 AA3 1 ILE A 85 ? ASP A 86 ? ILE A 84 ASP A 85 AA3 2 ARG A 107 ? ALA A 109 ? ARG A 106 ALA A 108 AA4 1 LYS A 113 ? GLU A 116 ? LYS A 112 GLU A 115 AA4 2 SER A 214 ? GLU A 217 ? SER A 213 GLU A 216 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 6 ? N VAL A 5 O TYR A 172 ? O TYR A 171 AA1 2 3 O VAL A 167 ? O VAL A 166 N VAL A 137 ? N VAL A 136 AA2 1 2 N VAL A 6 ? N VAL A 5 O TYR A 172 ? O TYR A 171 AA2 2 3 N LEU A 168 ? N LEU A 167 O LYS A 184 ? O LYS A 183 AA2 3 4 N TRP A 181 ? N TRP A 180 O MET A 199 ? O MET A 198 AA2 4 5 O ARG A 198 ? O ARG A 197 N TYR A 154 ? N TYR A 153 AA3 1 2 N ILE A 85 ? N ILE A 84 O ALA A 108 ? O ALA A 107 AA4 1 2 N THR A 115 ? N THR A 114 O TYR A 215 ? O TYR A 214 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BJD 901 ? 17 'binding site for residue BJD A 901' AC2 Software A SO4 902 ? 11 'binding site for residue SO4 A 902' AC3 Software A GOL 903 ? 8 'binding site for residue GOL A 903' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 LYS A 42 ? LYS A 41 . ? 4_444 ? 2 AC1 17 PHE A 71 ? PHE A 70 . ? 1_555 ? 3 AC1 17 TYR A 119 ? TYR A 118 . ? 2_554 ? 4 AC1 17 ALA A 141 ? ALA A 140 . ? 1_555 ? 5 AC1 17 ARG A 142 ? ARG A 141 . ? 1_555 ? 6 AC1 17 ASN A 162 ? ASN A 161 . ? 1_555 ? 7 AC1 17 VAL A 163 ? VAL A 162 . ? 1_555 ? 8 AC1 17 ASN A 164 ? ASN A 163 . ? 1_555 ? 9 AC1 17 HIS A 165 ? HIS A 164 . ? 1_555 ? 10 AC1 17 GLY A 166 ? GLY A 165 . ? 1_555 ? 11 AC1 17 ASN A 176 ? ASN A 175 . ? 1_554 ? 12 AC1 17 PHE A 212 ? PHE A 211 . ? 1_555 ? 13 AC1 17 SO4 C . ? SO4 A 902 . ? 1_555 ? 14 AC1 17 HOH E . ? HOH A 1008 . ? 2_554 ? 15 AC1 17 HOH E . ? HOH A 1008 . ? 1_555 ? 16 AC1 17 HOH E . ? HOH A 1039 . ? 1_555 ? 17 AC1 17 HOH E . ? HOH A 1073 . ? 1_555 ? 18 AC2 11 GLN A 20 ? GLN A 19 . ? 1_555 ? 19 AC2 11 GLY A 24 ? GLY A 23 . ? 1_555 ? 20 AC2 11 ALA A 25 ? ALA A 24 . ? 1_555 ? 21 AC2 11 SER A 26 ? SER A 25 . ? 1_555 ? 22 AC2 11 ASN A 164 ? ASN A 163 . ? 1_555 ? 23 AC2 11 HIS A 165 ? HIS A 164 . ? 1_555 ? 24 AC2 11 BJD B . ? BJD A 901 . ? 1_555 ? 25 AC2 11 HOH E . ? HOH A 1020 . ? 4_444 ? 26 AC2 11 HOH E . ? HOH A 1053 . ? 1_555 ? 27 AC2 11 HOH E . ? HOH A 1101 . ? 1_555 ? 28 AC2 11 HOH E . ? HOH A 1142 . ? 1_555 ? 29 AC3 8 LEU A 39 ? LEU A 38 . ? 1_555 ? 30 AC3 8 THR A 43 ? THR A 42 . ? 1_555 ? 31 AC3 8 ALA A 109 ? ALA A 108 . ? 1_555 ? 32 AC3 8 THR A 110 ? THR A 109 . ? 1_555 ? 33 AC3 8 ARG A 142 ? ARG A 141 . ? 4_454 ? 34 AC3 8 PRO A 144 ? PRO A 143 . ? 4_454 ? 35 AC3 8 PHE A 147 ? PHE A 146 . ? 4_454 ? 36 AC3 8 ILE A 218 ? ILE A 217 . ? 1_555 ? # _pdbx_entry_details.entry_id 5QCF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 1002 ? ? O A HOH 1106 ? ? 1.96 2 1 NE2 A GLN 219 ? ? O A HOH 1001 ? ? 2.11 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 1169 ? ? 1_555 O A HOH 1169 ? ? 2_554 2.08 2 1 O A HOH 1125 ? ? 1_555 O A HOH 1209 ? ? 4_454 2.15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 58 ? ? -123.13 -124.25 2 1 ASN A 163 ? ? -149.44 15.11 3 1 LYS A 202 ? ? -113.05 59.57 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 1008 ? E HOH . 2 1 A HOH 1198 ? E HOH . # _phasing.method MR # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 1254 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 7.09 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 0 ? A ILE 1 2 1 Y 1 A GLY 221 ? A GLY 222 3 1 Y 1 A GLY 222 ? A GLY 223 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BJD CL9 CL N N 74 BJD C70 C Y N 75 BJD C69 C Y N 76 BJD C81 C N N 77 BJD N83 N N N 78 BJD C85 C N N 79 BJD C87 C Y N 80 BJD C93 C Y N 81 BJD C92 C Y N 82 BJD C91 C Y N 83 BJD C90 C Y N 84 BJD C89 C Y N 85 BJD C68 C Y N 86 BJD C71 C Y N 87 BJD C72 C Y N 88 BJD C66 C Y N 89 BJD C64 C N N 90 BJD C62 C N N 91 BJD C50 C Y N 92 BJD C49 C Y N 93 BJD C51 C Y N 94 BJD CL6 CL N N 95 BJD C52 C Y N 96 BJD C53 C Y N 97 BJD C47 C Y N 98 BJD C22 C Y N 99 BJD N21 N Y N 100 BJD C23 C Y N 101 BJD C33 C N N 102 BJD N32 N N N 103 BJD S39 S N N 104 BJD O43 O N N 105 BJD O45 O N N 106 BJD C41 C N N 107 BJD C31 C N N 108 BJD C30 C N N 109 BJD C24 C Y N 110 BJD N19 N Y N 111 BJD C17 C N N 112 BJD C15 C N N 113 BJD C13 C N N 114 BJD N2 N N N 115 BJD C3 C N N 116 BJD C4 C N N 117 BJD O5 O N N 118 BJD C6 C N N 119 BJD C1 C N N 120 BJD H1 H N N 121 BJD H2 H N N 122 BJD H3 H N N 123 BJD H5 H N N 124 BJD H6 H N N 125 BJD H7 H N N 126 BJD H8 H N N 127 BJD H9 H N N 128 BJD H10 H N N 129 BJD H11 H N N 130 BJD H12 H N N 131 BJD H13 H N N 132 BJD H14 H N N 133 BJD H15 H N N 134 BJD H16 H N N 135 BJD H17 H N N 136 BJD H18 H N N 137 BJD H19 H N N 138 BJD H20 H N N 139 BJD H21 H N N 140 BJD H22 H N N 141 BJD H23 H N N 142 BJD H24 H N N 143 BJD H25 H N N 144 BJD H26 H N N 145 BJD H27 H N N 146 BJD H28 H N N 147 BJD H29 H N N 148 BJD H30 H N N 149 BJD H31 H N N 150 BJD H32 H N N 151 BJD H34 H N N 152 BJD H35 H N N 153 BJD H36 H N N 154 BJD H37 H N N 155 BJD H38 H N N 156 BJD H39 H N N 157 BJD H40 H N N 158 BJD H41 H N N 159 CYS N N N N 160 CYS CA C N R 161 CYS C C N N 162 CYS O O N N 163 CYS CB C N N 164 CYS SG S N N 165 CYS OXT O N N 166 CYS H H N N 167 CYS H2 H N N 168 CYS HA H N N 169 CYS HB2 H N N 170 CYS HB3 H N N 171 CYS HG H N N 172 CYS HXT H N N 173 GLN N N N N 174 GLN CA C N S 175 GLN C C N N 176 GLN O O N N 177 GLN CB C N N 178 GLN CG C N N 179 GLN CD C N N 180 GLN OE1 O N N 181 GLN NE2 N N N 182 GLN OXT O N N 183 GLN H H N N 184 GLN H2 H N N 185 GLN HA H N N 186 GLN HB2 H N N 187 GLN HB3 H N N 188 GLN HG2 H N N 189 GLN HG3 H N N 190 GLN HE21 H N N 191 GLN HE22 H N N 192 GLN HXT H N N 193 GLU N N N N 194 GLU CA C N S 195 GLU C C N N 196 GLU O O N N 197 GLU CB C N N 198 GLU CG C N N 199 GLU CD C N N 200 GLU OE1 O N N 201 GLU OE2 O N N 202 GLU OXT O N N 203 GLU H H N N 204 GLU H2 H N N 205 GLU HA H N N 206 GLU HB2 H N N 207 GLU HB3 H N N 208 GLU HG2 H N N 209 GLU HG3 H N N 210 GLU HE2 H N N 211 GLU HXT H N N 212 GLY N N N N 213 GLY CA C N N 214 GLY C C N N 215 GLY O O N N 216 GLY OXT O N N 217 GLY H H N N 218 GLY H2 H N N 219 GLY HA2 H N N 220 GLY HA3 H N N 221 GLY HXT H N N 222 GOL C1 C N N 223 GOL O1 O N N 224 GOL C2 C N N 225 GOL O2 O N N 226 GOL C3 C N N 227 GOL O3 O N N 228 GOL H11 H N N 229 GOL H12 H N N 230 GOL HO1 H N N 231 GOL H2 H N N 232 GOL HO2 H N N 233 GOL H31 H N N 234 GOL H32 H N N 235 GOL HO3 H N N 236 HIS N N N N 237 HIS CA C N S 238 HIS C C N N 239 HIS O O N N 240 HIS CB C N N 241 HIS CG C Y N 242 HIS ND1 N Y N 243 HIS CD2 C Y N 244 HIS CE1 C Y N 245 HIS NE2 N Y N 246 HIS OXT O N N 247 HIS H H N N 248 HIS H2 H N N 249 HIS HA H N N 250 HIS HB2 H N N 251 HIS HB3 H N N 252 HIS HD1 H N N 253 HIS HD2 H N N 254 HIS HE1 H N N 255 HIS HE2 H N N 256 HIS HXT H N N 257 HOH O O N N 258 HOH H1 H N N 259 HOH H2 H N N 260 ILE N N N N 261 ILE CA C N S 262 ILE C C N N 263 ILE O O N N 264 ILE CB C N S 265 ILE CG1 C N N 266 ILE CG2 C N N 267 ILE CD1 C N N 268 ILE OXT O N N 269 ILE H H N N 270 ILE H2 H N N 271 ILE HA H N N 272 ILE HB H N N 273 ILE HG12 H N N 274 ILE HG13 H N N 275 ILE HG21 H N N 276 ILE HG22 H N N 277 ILE HG23 H N N 278 ILE HD11 H N N 279 ILE HD12 H N N 280 ILE HD13 H N N 281 ILE HXT H N N 282 LEU N N N N 283 LEU CA C N S 284 LEU C C N N 285 LEU O O N N 286 LEU CB C N N 287 LEU CG C N N 288 LEU CD1 C N N 289 LEU CD2 C N N 290 LEU OXT O N N 291 LEU H H N N 292 LEU H2 H N N 293 LEU HA H N N 294 LEU HB2 H N N 295 LEU HB3 H N N 296 LEU HG H N N 297 LEU HD11 H N N 298 LEU HD12 H N N 299 LEU HD13 H N N 300 LEU HD21 H N N 301 LEU HD22 H N N 302 LEU HD23 H N N 303 LEU HXT H N N 304 LYS N N N N 305 LYS CA C N S 306 LYS C C N N 307 LYS O O N N 308 LYS CB C N N 309 LYS CG C N N 310 LYS CD C N N 311 LYS CE C N N 312 LYS NZ N N N 313 LYS OXT O N N 314 LYS H H N N 315 LYS H2 H N N 316 LYS HA H N N 317 LYS HB2 H N N 318 LYS HB3 H N N 319 LYS HG2 H N N 320 LYS HG3 H N N 321 LYS HD2 H N N 322 LYS HD3 H N N 323 LYS HE2 H N N 324 LYS HE3 H N N 325 LYS HZ1 H N N 326 LYS HZ2 H N N 327 LYS HZ3 H N N 328 LYS HXT H N N 329 MET N N N N 330 MET CA C N S 331 MET C C N N 332 MET O O N N 333 MET CB C N N 334 MET CG C N N 335 MET SD S N N 336 MET CE C N N 337 MET OXT O N N 338 MET H H N N 339 MET H2 H N N 340 MET HA H N N 341 MET HB2 H N N 342 MET HB3 H N N 343 MET HG2 H N N 344 MET HG3 H N N 345 MET HE1 H N N 346 MET HE2 H N N 347 MET HE3 H N N 348 MET HXT H N N 349 PHE N N N N 350 PHE CA C N S 351 PHE C C N N 352 PHE O O N N 353 PHE CB C N N 354 PHE CG C Y N 355 PHE CD1 C Y N 356 PHE CD2 C Y N 357 PHE CE1 C Y N 358 PHE CE2 C Y N 359 PHE CZ C Y N 360 PHE OXT O N N 361 PHE H H N N 362 PHE H2 H N N 363 PHE HA H N N 364 PHE HB2 H N N 365 PHE HB3 H N N 366 PHE HD1 H N N 367 PHE HD2 H N N 368 PHE HE1 H N N 369 PHE HE2 H N N 370 PHE HZ H N N 371 PHE HXT H N N 372 PRO N N N N 373 PRO CA C N S 374 PRO C C N N 375 PRO O O N N 376 PRO CB C N N 377 PRO CG C N N 378 PRO CD C N N 379 PRO OXT O N N 380 PRO H H N N 381 PRO HA H N N 382 PRO HB2 H N N 383 PRO HB3 H N N 384 PRO HG2 H N N 385 PRO HG3 H N N 386 PRO HD2 H N N 387 PRO HD3 H N N 388 PRO HXT H N N 389 SER N N N N 390 SER CA C N S 391 SER C C N N 392 SER O O N N 393 SER CB C N N 394 SER OG O N N 395 SER OXT O N N 396 SER H H N N 397 SER H2 H N N 398 SER HA H N N 399 SER HB2 H N N 400 SER HB3 H N N 401 SER HG H N N 402 SER HXT H N N 403 SO4 S S N N 404 SO4 O1 O N N 405 SO4 O2 O N N 406 SO4 O3 O N N 407 SO4 O4 O N N 408 THR N N N N 409 THR CA C N S 410 THR C C N N 411 THR O O N N 412 THR CB C N R 413 THR OG1 O N N 414 THR CG2 C N N 415 THR OXT O N N 416 THR H H N N 417 THR H2 H N N 418 THR HA H N N 419 THR HB H N N 420 THR HG1 H N N 421 THR HG21 H N N 422 THR HG22 H N N 423 THR HG23 H N N 424 THR HXT H N N 425 TRP N N N N 426 TRP CA C N S 427 TRP C C N N 428 TRP O O N N 429 TRP CB C N N 430 TRP CG C Y N 431 TRP CD1 C Y N 432 TRP CD2 C Y N 433 TRP NE1 N Y N 434 TRP CE2 C Y N 435 TRP CE3 C Y N 436 TRP CZ2 C Y N 437 TRP CZ3 C Y N 438 TRP CH2 C Y N 439 TRP OXT O N N 440 TRP H H N N 441 TRP H2 H N N 442 TRP HA H N N 443 TRP HB2 H N N 444 TRP HB3 H N N 445 TRP HD1 H N N 446 TRP HE1 H N N 447 TRP HE3 H N N 448 TRP HZ2 H N N 449 TRP HZ3 H N N 450 TRP HH2 H N N 451 TRP HXT H N N 452 TYR N N N N 453 TYR CA C N S 454 TYR C C N N 455 TYR O O N N 456 TYR CB C N N 457 TYR CG C Y N 458 TYR CD1 C Y N 459 TYR CD2 C Y N 460 TYR CE1 C Y N 461 TYR CE2 C Y N 462 TYR CZ C Y N 463 TYR OH O N N 464 TYR OXT O N N 465 TYR H H N N 466 TYR H2 H N N 467 TYR HA H N N 468 TYR HB2 H N N 469 TYR HB3 H N N 470 TYR HD1 H N N 471 TYR HD2 H N N 472 TYR HE1 H N N 473 TYR HE2 H N N 474 TYR HH H N N 475 TYR HXT H N N 476 VAL N N N N 477 VAL CA C N S 478 VAL C C N N 479 VAL O O N N 480 VAL CB C N N 481 VAL CG1 C N N 482 VAL CG2 C N N 483 VAL OXT O N N 484 VAL H H N N 485 VAL H2 H N N 486 VAL HA H N N 487 VAL HB H N N 488 VAL HG11 H N N 489 VAL HG12 H N N 490 VAL HG13 H N N 491 VAL HG21 H N N 492 VAL HG22 H N N 493 VAL HG23 H N N 494 VAL HXT H N N 495 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BJD O5 C6 sing N N 70 BJD O5 C4 sing N N 71 BJD C6 C1 sing N N 72 BJD C4 C3 sing N N 73 BJD C1 N2 sing N N 74 BJD C3 N2 sing N N 75 BJD N2 C13 sing N N 76 BJD C13 C15 sing N N 77 BJD C15 C17 sing N N 78 BJD C17 N19 sing N N 79 BJD CL9 C70 sing N N 80 BJD N19 N21 sing Y N 81 BJD N19 C24 sing Y N 82 BJD C81 C69 sing N N 83 BJD C81 N83 sing N N 84 BJD C70 C69 doub Y N 85 BJD C70 C71 sing Y N 86 BJD N21 C22 doub Y N 87 BJD C30 C24 sing N N 88 BJD C30 C31 sing N N 89 BJD C69 C68 sing Y N 90 BJD C24 C23 doub Y N 91 BJD C71 C72 doub Y N 92 BJD C68 C66 doub Y N 93 BJD C72 C66 sing Y N 94 BJD C66 C64 sing N N 95 BJD C31 N32 sing N N 96 BJD C22 C23 sing Y N 97 BJD C22 C47 sing N N 98 BJD C64 C62 trip N N 99 BJD C23 C33 sing N N 100 BJD C49 C47 doub Y N 101 BJD C49 C50 sing Y N 102 BJD C62 C50 sing N N 103 BJD C47 C53 sing Y N 104 BJD C50 C51 doub Y N 105 BJD C33 N32 sing N N 106 BJD N83 C85 sing N N 107 BJD C53 C52 doub Y N 108 BJD C51 C52 sing Y N 109 BJD C51 CL6 sing N N 110 BJD N32 S39 sing N N 111 BJD C41 S39 sing N N 112 BJD C85 C87 sing N N 113 BJD S39 O43 doub N N 114 BJD S39 O45 doub N N 115 BJD C87 C93 doub Y N 116 BJD C87 C89 sing Y N 117 BJD C93 C92 sing Y N 118 BJD C89 C90 doub Y N 119 BJD C92 C91 doub Y N 120 BJD C90 C91 sing Y N 121 BJD C81 H1 sing N N 122 BJD C81 H2 sing N N 123 BJD N83 H3 sing N N 124 BJD C85 H5 sing N N 125 BJD C85 H6 sing N N 126 BJD C93 H7 sing N N 127 BJD C92 H8 sing N N 128 BJD C91 H9 sing N N 129 BJD C90 H10 sing N N 130 BJD C89 H11 sing N N 131 BJD C68 H12 sing N N 132 BJD C71 H13 sing N N 133 BJD C72 H14 sing N N 134 BJD C49 H15 sing N N 135 BJD C52 H16 sing N N 136 BJD C53 H17 sing N N 137 BJD C33 H18 sing N N 138 BJD C33 H19 sing N N 139 BJD C41 H20 sing N N 140 BJD C41 H21 sing N N 141 BJD C41 H22 sing N N 142 BJD C31 H23 sing N N 143 BJD C31 H24 sing N N 144 BJD C30 H25 sing N N 145 BJD C30 H26 sing N N 146 BJD C17 H27 sing N N 147 BJD C17 H28 sing N N 148 BJD C15 H29 sing N N 149 BJD C15 H30 sing N N 150 BJD C13 H31 sing N N 151 BJD C13 H32 sing N N 152 BJD C3 H34 sing N N 153 BJD C3 H35 sing N N 154 BJD C4 H36 sing N N 155 BJD C4 H37 sing N N 156 BJD C6 H38 sing N N 157 BJD C6 H39 sing N N 158 BJD C1 H40 sing N N 159 BJD C1 H41 sing N N 160 CYS N CA sing N N 161 CYS N H sing N N 162 CYS N H2 sing N N 163 CYS CA C sing N N 164 CYS CA CB sing N N 165 CYS CA HA sing N N 166 CYS C O doub N N 167 CYS C OXT sing N N 168 CYS CB SG sing N N 169 CYS CB HB2 sing N N 170 CYS CB HB3 sing N N 171 CYS SG HG sing N N 172 CYS OXT HXT sing N N 173 GLN N CA sing N N 174 GLN N H sing N N 175 GLN N H2 sing N N 176 GLN CA C sing N N 177 GLN CA CB sing N N 178 GLN CA HA sing N N 179 GLN C O doub N N 180 GLN C OXT sing N N 181 GLN CB CG sing N N 182 GLN CB HB2 sing N N 183 GLN CB HB3 sing N N 184 GLN CG CD sing N N 185 GLN CG HG2 sing N N 186 GLN CG HG3 sing N N 187 GLN CD OE1 doub N N 188 GLN CD NE2 sing N N 189 GLN NE2 HE21 sing N N 190 GLN NE2 HE22 sing N N 191 GLN OXT HXT sing N N 192 GLU N CA sing N N 193 GLU N H sing N N 194 GLU N H2 sing N N 195 GLU CA C sing N N 196 GLU CA CB sing N N 197 GLU CA HA sing N N 198 GLU C O doub N N 199 GLU C OXT sing N N 200 GLU CB CG sing N N 201 GLU CB HB2 sing N N 202 GLU CB HB3 sing N N 203 GLU CG CD sing N N 204 GLU CG HG2 sing N N 205 GLU CG HG3 sing N N 206 GLU CD OE1 doub N N 207 GLU CD OE2 sing N N 208 GLU OE2 HE2 sing N N 209 GLU OXT HXT sing N N 210 GLY N CA sing N N 211 GLY N H sing N N 212 GLY N H2 sing N N 213 GLY CA C sing N N 214 GLY CA HA2 sing N N 215 GLY CA HA3 sing N N 216 GLY C O doub N N 217 GLY C OXT sing N N 218 GLY OXT HXT sing N N 219 GOL C1 O1 sing N N 220 GOL C1 C2 sing N N 221 GOL C1 H11 sing N N 222 GOL C1 H12 sing N N 223 GOL O1 HO1 sing N N 224 GOL C2 O2 sing N N 225 GOL C2 C3 sing N N 226 GOL C2 H2 sing N N 227 GOL O2 HO2 sing N N 228 GOL C3 O3 sing N N 229 GOL C3 H31 sing N N 230 GOL C3 H32 sing N N 231 GOL O3 HO3 sing N N 232 HIS N CA sing N N 233 HIS N H sing N N 234 HIS N H2 sing N N 235 HIS CA C sing N N 236 HIS CA CB sing N N 237 HIS CA HA sing N N 238 HIS C O doub N N 239 HIS C OXT sing N N 240 HIS CB CG sing N N 241 HIS CB HB2 sing N N 242 HIS CB HB3 sing N N 243 HIS CG ND1 sing Y N 244 HIS CG CD2 doub Y N 245 HIS ND1 CE1 doub Y N 246 HIS ND1 HD1 sing N N 247 HIS CD2 NE2 sing Y N 248 HIS CD2 HD2 sing N N 249 HIS CE1 NE2 sing Y N 250 HIS CE1 HE1 sing N N 251 HIS NE2 HE2 sing N N 252 HIS OXT HXT sing N N 253 HOH O H1 sing N N 254 HOH O H2 sing N N 255 ILE N CA sing N N 256 ILE N H sing N N 257 ILE N H2 sing N N 258 ILE CA C sing N N 259 ILE CA CB sing N N 260 ILE CA HA sing N N 261 ILE C O doub N N 262 ILE C OXT sing N N 263 ILE CB CG1 sing N N 264 ILE CB CG2 sing N N 265 ILE CB HB sing N N 266 ILE CG1 CD1 sing N N 267 ILE CG1 HG12 sing N N 268 ILE CG1 HG13 sing N N 269 ILE CG2 HG21 sing N N 270 ILE CG2 HG22 sing N N 271 ILE CG2 HG23 sing N N 272 ILE CD1 HD11 sing N N 273 ILE CD1 HD12 sing N N 274 ILE CD1 HD13 sing N N 275 ILE OXT HXT sing N N 276 LEU N CA sing N N 277 LEU N H sing N N 278 LEU N H2 sing N N 279 LEU CA C sing N N 280 LEU CA CB sing N N 281 LEU CA HA sing N N 282 LEU C O doub N N 283 LEU C OXT sing N N 284 LEU CB CG sing N N 285 LEU CB HB2 sing N N 286 LEU CB HB3 sing N N 287 LEU CG CD1 sing N N 288 LEU CG CD2 sing N N 289 LEU CG HG sing N N 290 LEU CD1 HD11 sing N N 291 LEU CD1 HD12 sing N N 292 LEU CD1 HD13 sing N N 293 LEU CD2 HD21 sing N N 294 LEU CD2 HD22 sing N N 295 LEU CD2 HD23 sing N N 296 LEU OXT HXT sing N N 297 LYS N CA sing N N 298 LYS N H sing N N 299 LYS N H2 sing N N 300 LYS CA C sing N N 301 LYS CA CB sing N N 302 LYS CA HA sing N N 303 LYS C O doub N N 304 LYS C OXT sing N N 305 LYS CB CG sing N N 306 LYS CB HB2 sing N N 307 LYS CB HB3 sing N N 308 LYS CG CD sing N N 309 LYS CG HG2 sing N N 310 LYS CG HG3 sing N N 311 LYS CD CE sing N N 312 LYS CD HD2 sing N N 313 LYS CD HD3 sing N N 314 LYS CE NZ sing N N 315 LYS CE HE2 sing N N 316 LYS CE HE3 sing N N 317 LYS NZ HZ1 sing N N 318 LYS NZ HZ2 sing N N 319 LYS NZ HZ3 sing N N 320 LYS OXT HXT sing N N 321 MET N CA sing N N 322 MET N H sing N N 323 MET N H2 sing N N 324 MET CA C sing N N 325 MET CA CB sing N N 326 MET CA HA sing N N 327 MET C O doub N N 328 MET C OXT sing N N 329 MET CB CG sing N N 330 MET CB HB2 sing N N 331 MET CB HB3 sing N N 332 MET CG SD sing N N 333 MET CG HG2 sing N N 334 MET CG HG3 sing N N 335 MET SD CE sing N N 336 MET CE HE1 sing N N 337 MET CE HE2 sing N N 338 MET CE HE3 sing N N 339 MET OXT HXT sing N N 340 PHE N CA sing N N 341 PHE N H sing N N 342 PHE N H2 sing N N 343 PHE CA C sing N N 344 PHE CA CB sing N N 345 PHE CA HA sing N N 346 PHE C O doub N N 347 PHE C OXT sing N N 348 PHE CB CG sing N N 349 PHE CB HB2 sing N N 350 PHE CB HB3 sing N N 351 PHE CG CD1 doub Y N 352 PHE CG CD2 sing Y N 353 PHE CD1 CE1 sing Y N 354 PHE CD1 HD1 sing N N 355 PHE CD2 CE2 doub Y N 356 PHE CD2 HD2 sing N N 357 PHE CE1 CZ doub Y N 358 PHE CE1 HE1 sing N N 359 PHE CE2 CZ sing Y N 360 PHE CE2 HE2 sing N N 361 PHE CZ HZ sing N N 362 PHE OXT HXT sing N N 363 PRO N CA sing N N 364 PRO N CD sing N N 365 PRO N H sing N N 366 PRO CA C sing N N 367 PRO CA CB sing N N 368 PRO CA HA sing N N 369 PRO C O doub N N 370 PRO C OXT sing N N 371 PRO CB CG sing N N 372 PRO CB HB2 sing N N 373 PRO CB HB3 sing N N 374 PRO CG CD sing N N 375 PRO CG HG2 sing N N 376 PRO CG HG3 sing N N 377 PRO CD HD2 sing N N 378 PRO CD HD3 sing N N 379 PRO OXT HXT sing N N 380 SER N CA sing N N 381 SER N H sing N N 382 SER N H2 sing N N 383 SER CA C sing N N 384 SER CA CB sing N N 385 SER CA HA sing N N 386 SER C O doub N N 387 SER C OXT sing N N 388 SER CB OG sing N N 389 SER CB HB2 sing N N 390 SER CB HB3 sing N N 391 SER OG HG sing N N 392 SER OXT HXT sing N N 393 SO4 S O1 doub N N 394 SO4 S O2 doub N N 395 SO4 S O3 sing N N 396 SO4 S O4 sing N N 397 THR N CA sing N N 398 THR N H sing N N 399 THR N H2 sing N N 400 THR CA C sing N N 401 THR CA CB sing N N 402 THR CA HA sing N N 403 THR C O doub N N 404 THR C OXT sing N N 405 THR CB OG1 sing N N 406 THR CB CG2 sing N N 407 THR CB HB sing N N 408 THR OG1 HG1 sing N N 409 THR CG2 HG21 sing N N 410 THR CG2 HG22 sing N N 411 THR CG2 HG23 sing N N 412 THR OXT HXT sing N N 413 TRP N CA sing N N 414 TRP N H sing N N 415 TRP N H2 sing N N 416 TRP CA C sing N N 417 TRP CA CB sing N N 418 TRP CA HA sing N N 419 TRP C O doub N N 420 TRP C OXT sing N N 421 TRP CB CG sing N N 422 TRP CB HB2 sing N N 423 TRP CB HB3 sing N N 424 TRP CG CD1 doub Y N 425 TRP CG CD2 sing Y N 426 TRP CD1 NE1 sing Y N 427 TRP CD1 HD1 sing N N 428 TRP CD2 CE2 doub Y N 429 TRP CD2 CE3 sing Y N 430 TRP NE1 CE2 sing Y N 431 TRP NE1 HE1 sing N N 432 TRP CE2 CZ2 sing Y N 433 TRP CE3 CZ3 doub Y N 434 TRP CE3 HE3 sing N N 435 TRP CZ2 CH2 doub Y N 436 TRP CZ2 HZ2 sing N N 437 TRP CZ3 CH2 sing Y N 438 TRP CZ3 HZ3 sing N N 439 TRP CH2 HH2 sing N N 440 TRP OXT HXT sing N N 441 TYR N CA sing N N 442 TYR N H sing N N 443 TYR N H2 sing N N 444 TYR CA C sing N N 445 TYR CA CB sing N N 446 TYR CA HA sing N N 447 TYR C O doub N N 448 TYR C OXT sing N N 449 TYR CB CG sing N N 450 TYR CB HB2 sing N N 451 TYR CB HB3 sing N N 452 TYR CG CD1 doub Y N 453 TYR CG CD2 sing Y N 454 TYR CD1 CE1 sing Y N 455 TYR CD1 HD1 sing N N 456 TYR CD2 CE2 doub Y N 457 TYR CD2 HD2 sing N N 458 TYR CE1 CZ doub Y N 459 TYR CE1 HE1 sing N N 460 TYR CE2 CZ sing Y N 461 TYR CE2 HE2 sing N N 462 TYR CZ OH sing N N 463 TYR OH HH sing N N 464 TYR OXT HXT sing N N 465 VAL N CA sing N N 466 VAL N H sing N N 467 VAL N H2 sing N N 468 VAL CA C sing N N 469 VAL CA CB sing N N 470 VAL CA HA sing N N 471 VAL C O doub N N 472 VAL C OXT sing N N 473 VAL CB CG1 sing N N 474 VAL CB CG2 sing N N 475 VAL CB HB sing N N 476 VAL CG1 HG11 sing N N 477 VAL CG1 HG12 sing N N 478 VAL CG1 HG13 sing N N 479 VAL CG2 HG21 sing N N 480 VAL CG2 HG22 sing N N 481 VAL CG2 HG23 sing N N 482 VAL OXT HXT sing N N 483 # _pdbx_deposit_group.group_id G_1002040 _pdbx_deposit_group.group_description 'Ligand binding to Cathepsin S' _pdbx_deposit_group.group_title 'Ligand binding to Cathepsin S' _pdbx_deposit_group.group_type undefined # _atom_sites.entry_id 5QCF _atom_sites.fract_transf_matrix[1][1] 0.012676 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003279 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013580 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023100 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_ #