HEADER HYDROLASE 30-AUG-18 5QF0 TITLE PANDDA ANALYSIS GROUP DEPOSITION -- CRYSTAL STRUCTURE OF PTP1B IN TITLE 2 COMPLEX WITH COMPOUND_XST00000216B CAVEAT 5QF0 SEVERAL RESIDUES ARE NOT PROPERLY LINKED WITH SHORT C-N BOND CAVEAT 2 5QF0 DISTANCE FOR CERTAIN CONFORMERS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1B,PTP-1B; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN1, PTP1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS PANDDA, SGC - DIAMOND I04-1 FRAGMENT SCREENING, PROTEIN TYROSINE KEYWDS 2 PHOSPHATASE, PTP, PROTEIN TYROSINE PHOSPHATASE 1B, PTP1B, ENZYME, KEYWDS 3 ALLOSTERY, MULTICONFORMER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.KEEDY,Z.B.HILL,J.T.BIEL,E.KANG,T.J.RETTENMAIER,J.BRANDAO-NETO, AUTHOR 2 F.VON DELFT,J.A.WELLS,J.S.FRASER REVDAT 3 13-NOV-24 5QF0 1 REMARK REVDAT 2 06-FEB-19 5QF0 1 COMPND JRNL REVDAT 1 10-OCT-18 5QF0 0 JRNL AUTH D.A.KEEDY,Z.B.HILL,J.T.BIEL,E.KANG,T.J.RETTENMAIER, JRNL AUTH 2 J.BRANDAO-NETO,N.M.PEARCE,F.VON DELFT,J.A.WELLS,J.S.FRASER JRNL TITL AN EXPANDED ALLOSTERIC NETWORK IN PTP1B BY MULTITEMPERATURE JRNL TITL 2 CRYSTALLOGRAPHY, FRAGMENT SCREENING, AND COVALENT TETHERING. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29877794 JRNL DOI 10.7554/ELIFE.36307 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0111 - 4.2078 1.00 3710 151 0.1851 0.2081 REMARK 3 2 4.2078 - 3.3402 1.00 3574 144 0.1696 0.1945 REMARK 3 3 3.3402 - 2.9181 1.00 3547 144 0.1780 0.1753 REMARK 3 4 2.9181 - 2.6513 1.00 3531 146 0.1790 0.2119 REMARK 3 5 2.6513 - 2.4613 1.00 3493 146 0.1758 0.1938 REMARK 3 6 2.4613 - 2.3162 1.00 3504 146 0.1813 0.2218 REMARK 3 7 2.3162 - 2.2002 1.00 3485 144 0.1850 0.2158 REMARK 3 8 2.2002 - 2.1044 1.00 3496 140 0.1892 0.2389 REMARK 3 9 2.1044 - 2.0234 1.00 3477 144 0.2037 0.2510 REMARK 3 10 2.0234 - 1.9536 1.00 3488 145 0.2022 0.2547 REMARK 3 11 1.9536 - 1.8925 1.00 3471 142 0.2052 0.2466 REMARK 3 12 1.8925 - 1.8384 1.00 3445 142 0.2198 0.2215 REMARK 3 13 1.8384 - 1.7900 1.00 3485 137 0.2587 0.2472 REMARK 3 14 1.7900 - 1.7463 1.00 3478 146 0.2884 0.3617 REMARK 3 15 1.7463 - 1.7066 1.00 3461 140 0.3252 0.3117 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.20 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.025 8280 REMARK 3 ANGLE : 2.009 11320 REMARK 3 CHIRALITY : 0.255 1173 REMARK 3 PLANARITY : 0.011 1551 REMARK 3 DIHEDRAL : 19.998 3294 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5QF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1001401865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105159 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 62.945 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.93100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL SOLUTION: 0.3 M MAGNESIUM REMARK 280 ACETATE, 0.1 M HEPES PH 7.5, 0.1% BETA-MERCAPTOETHANOL, 13-14% REMARK 280 PEG 8000, 2% ETHANOL, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.58433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.16867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.16867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.58433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 285 REMARK 465 SER A 286 REMARK 465 VAL A 287 REMARK 465 GLN A 288 REMARK 465 ASP A 289 REMARK 465 GLN A 290 REMARK 465 TRP A 291 REMARK 465 LYS A 292 REMARK 465 GLU A 293 REMARK 465 LEU A 294 REMARK 465 SER A 295 REMARK 465 HIS A 296 REMARK 465 GLU A 297 REMARK 465 ASP A 298 REMARK 465 LEU A 299 REMARK 465 GLU A 300 REMARK 465 PRO A 301 REMARK 465 PRO A 302 REMARK 465 PRO A 303 REMARK 465 GLU A 304 REMARK 465 HIS A 305 REMARK 465 ILE A 306 REMARK 465 PRO A 307 REMARK 465 PRO A 308 REMARK 465 PRO A 309 REMARK 465 PRO A 310 REMARK 465 ARG A 311 REMARK 465 PRO A 312 REMARK 465 PRO A 313 REMARK 465 LYS A 314 REMARK 465 ARG A 315 REMARK 465 ILE A 316 REMARK 465 LEU A 317 REMARK 465 GLU A 318 REMARK 465 PRO A 319 REMARK 465 HIS A 320 REMARK 465 ASN A 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 116 O HOH A 508 1.03 REMARK 500 HZ1 LYS A 116 O HOH A 508 1.03 REMARK 500 HZ1 LYS A 248 O HOH A 509 1.07 REMARK 500 HZ1 LYS A 248 O HOH A 509 1.07 REMARK 500 H LYS A 239 O HOH A 514 1.23 REMARK 500 H LYS A 239 O HOH A 514 1.23 REMARK 500 HZ3 LYS A 5 O HOH A 507 1.27 REMARK 500 HZ3 LYS A 5 O HOH A 507 1.27 REMARK 500 H ASP A 240 O HOH A 512 1.30 REMARK 500 H ASP A 240 O HOH A 512 1.30 REMARK 500 HE3 LYS A 73 O HOH A 505 1.31 REMARK 500 HE3 LYS A 73 O HOH A 505 1.31 REMARK 500 HZ1 LYS A 116 O HOH A 508 1.33 REMARK 500 HZ1 LYS A 116 O HOH A 508 1.33 REMARK 500 O1 TRS A 404 O HOH A 501 1.50 REMARK 500 HH11 ARG A 79 O HOH A 519 1.52 REMARK 500 HH11 ARG A 79 O HOH A 519 1.52 REMARK 500 O MET A 282 O HOH A 502 1.62 REMARK 500 O MET A 282 O HOH A 502 1.62 REMARK 500 O03 JMG A 401 O HOH A 503 1.66 REMARK 500 O03 JMG A 401 O HOH A 503 1.66 REMARK 500 O HOH A 638 O HOH A 745 1.69 REMARK 500 OE2 GLU A 75 O HOH A 504 1.70 REMARK 500 OE2 GLU A 75 O HOH A 504 1.70 REMARK 500 O HOH A 758 O HOH A 769 1.83 REMARK 500 NZ LYS A 73 O HOH A 505 1.86 REMARK 500 NZ LYS A 73 O HOH A 505 1.86 REMARK 500 O HOH A 701 O HOH A 724 1.88 REMARK 500 CE LYS A 73 O HOH A 505 1.89 REMARK 500 CE LYS A 73 O HOH A 505 1.89 REMARK 500 O HOH A 727 O HOH A 739 1.89 REMARK 500 O HOH A 689 O HOH A 690 1.89 REMARK 500 OD1 ASP A 22 O HOH A 506 1.94 REMARK 500 O HOH A 722 O HOH A 729 1.95 REMARK 500 O HOH A 583 O HOH A 734 1.96 REMARK 500 NZ LYS A 5 O HOH A 507 1.96 REMARK 500 NZ LYS A 5 O HOH A 507 1.96 REMARK 500 NZ LYS A 116 O HOH A 508 1.97 REMARK 500 NZ LYS A 116 O HOH A 508 1.97 REMARK 500 NZ LYS A 248 O HOH A 509 2.00 REMARK 500 NZ LYS A 248 O HOH A 509 2.00 REMARK 500 O HOH A 592 O HOH A 740 2.08 REMARK 500 O HOH A 733 O HOH A 753 2.08 REMARK 500 OD2 ASP A 236 O HOH A 510 2.09 REMARK 500 OD2 ASP A 236 O HOH A 510 2.09 REMARK 500 O HOH A 618 O HOH A 759 2.10 REMARK 500 O HOH A 725 O HOH A 741 2.10 REMARK 500 NZ LYS A 39 O HOH A 511 2.14 REMARK 500 NZ LYS A 39 O HOH A 511 2.14 REMARK 500 O HOH A 523 O HOH A 706 2.14 REMARK 500 REMARK 500 THIS ENTRY HAS 58 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ1 LYS A 128 HO2 TRS A 404 4565 1.15 REMARK 500 HZ1 LYS A 128 HO2 TRS A 404 4565 1.15 REMARK 500 O HOH A 515 O HOH A 665 4565 1.69 REMARK 500 O HOH A 568 O HOH A 745 4455 1.98 REMARK 500 O HOH A 550 O HOH A 745 4455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 7 C GLU A 8 N 0.149 REMARK 500 PHE A 7 C GLU A 8 N 0.149 REMARK 500 TRP A 16 C ALA A 17 N -0.170 REMARK 500 TRP A 16 C ALA A 17 N -0.170 REMARK 500 SER A 55 C ARG A 56 N 0.160 REMARK 500 SER A 55 C ARG A 56 N 0.160 REMARK 500 ARG A 56 C ILE A 57 N 0.152 REMARK 500 ARG A 56 C ILE A 57 N 0.152 REMARK 500 ASP A 65 C TYR A 66 N -0.151 REMARK 500 ASP A 65 C TYR A 66 N -0.151 REMARK 500 THR A 84 C THR A 84 O -0.118 REMARK 500 THR A 84 C THR A 84 O -0.118 REMARK 500 CYS A 121 C ALA A 122 N 0.150 REMARK 500 CYS A 121 C ALA A 122 N 0.150 REMARK 500 LYS A 128 C GLU A 129 N -0.160 REMARK 500 LYS A 128 C GLU A 129 N -0.160 REMARK 500 SER A 151 C TYR A 152 N -0.249 REMARK 500 SER A 151 C TYR A 152 N -0.245 REMARK 500 GLN A 157 C LEU A 158 N -0.145 REMARK 500 GLN A 157 C LEU A 158 N -0.145 REMARK 500 LEU A 192 C ASN A 193 N 0.216 REMARK 500 LEU A 192 C ASN A 193 N 0.216 REMARK 500 GLY A 209 C PRO A 210 N -0.130 REMARK 500 GLY A 209 C PRO A 210 N -0.130 REMARK 500 SER A 216 C ALA A 217 N -0.173 REMARK 500 SER A 216 C ALA A 217 N -0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 22 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 22 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 CYS A 121 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 CYS A 121 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 CYS A 215 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 CYS A 215 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 CYS A 226 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 CYS A 226 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 2.84 -64.04 REMARK 500 ASP A 63 2.84 -64.04 REMARK 500 ASN A 64 111.42 161.12 REMARK 500 ASN A 64 111.42 161.12 REMARK 500 CYS A 215 -136.51 -132.80 REMARK 500 CYS A 215 -136.51 -132.80 REMARK 500 CYS A 215 -133.69 -131.23 REMARK 500 CYS A 215 -133.69 -131.23 REMARK 500 ILE A 261 107.55 75.19 REMARK 500 ILE A 261 107.55 75.19 REMARK 500 ILE A 261 94.22 84.31 REMARK 500 ILE A 261 94.22 84.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JMG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JMG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JMG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 404 DBREF 5QF0 A 1 321 UNP P18031 PTN1_HUMAN 1 321 SEQADV 5QF0 SER A 32 UNP P18031 CYS 32 ENGINEERED MUTATION SEQADV 5QF0 VAL A 92 UNP P18031 CYS 92 ENGINEERED MUTATION SEQRES 1 A 321 MET GLU MET GLU LYS GLU PHE GLU GLN ILE ASP LYS SER SEQRES 2 A 321 GLY SER TRP ALA ALA ILE TYR GLN ASP ILE ARG HIS GLU SEQRES 3 A 321 ALA SER ASP PHE PRO SER ARG VAL ALA LYS LEU PRO LYS SEQRES 4 A 321 ASN LYS ASN ARG ASN ARG TYR ARG ASP VAL SER PRO PHE SEQRES 5 A 321 ASP HIS SER ARG ILE LYS LEU HIS GLN GLU ASP ASN ASP SEQRES 6 A 321 TYR ILE ASN ALA SER LEU ILE LYS MET GLU GLU ALA GLN SEQRES 7 A 321 ARG SER TYR ILE LEU THR GLN GLY PRO LEU PRO ASN THR SEQRES 8 A 321 VAL GLY HIS PHE TRP GLU MET VAL TRP GLU GLN LYS SER SEQRES 9 A 321 ARG GLY VAL VAL MET LEU ASN ARG VAL MET GLU LYS GLY SEQRES 10 A 321 SER LEU LYS CYS ALA GLN TYR TRP PRO GLN LYS GLU GLU SEQRES 11 A 321 LYS GLU MET ILE PHE GLU ASP THR ASN LEU LYS LEU THR SEQRES 12 A 321 LEU ILE SER GLU ASP ILE LYS SER TYR TYR THR VAL ARG SEQRES 13 A 321 GLN LEU GLU LEU GLU ASN LEU THR THR GLN GLU THR ARG SEQRES 14 A 321 GLU ILE LEU HIS PHE HIS TYR THR THR TRP PRO ASP PHE SEQRES 15 A 321 GLY VAL PRO GLU SER PRO ALA SER PHE LEU ASN PHE LEU SEQRES 16 A 321 PHE LYS VAL ARG GLU SER GLY SER LEU SER PRO GLU HIS SEQRES 17 A 321 GLY PRO VAL VAL VAL HIS CYS SER ALA GLY ILE GLY ARG SEQRES 18 A 321 SER GLY THR PHE CYS LEU ALA ASP THR CYS LEU LEU LEU SEQRES 19 A 321 MET ASP LYS ARG LYS ASP PRO SER SER VAL ASP ILE LYS SEQRES 20 A 321 LYS VAL LEU LEU GLU MET ARG LYS PHE ARG MET GLY LEU SEQRES 21 A 321 ILE GLN THR ALA ASP GLN LEU ARG PHE SER TYR LEU ALA SEQRES 22 A 321 VAL ILE GLU GLY ALA LYS PHE ILE MET GLY ASP SER SER SEQRES 23 A 321 VAL GLN ASP GLN TRP LYS GLU LEU SER HIS GLU ASP LEU SEQRES 24 A 321 GLU PRO PRO PRO GLU HIS ILE PRO PRO PRO PRO ARG PRO SEQRES 25 A 321 PRO LYS ARG ILE LEU GLU PRO HIS ASN HET JMG A 401 42 HET JMG A 402 42 HET JMG A 403 42 HET TRS A 404 20 HETNAM JMG 5-PHENYLTHIOPHENE-2-CARBOXYLIC ACID HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 2 JMG 3(C11 H8 O2 S) FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 HOH *273(H2 O) HELIX 1 AA1 GLU A 2 GLY A 14 1 13 HELIX 2 AA2 SER A 15 ALA A 27 1 13 HELIX 3 AA3 LEU A 37 ASN A 44 5 8 HELIX 4 AA4 THR A 91 GLN A 102 1 12 HELIX 5 AA5 PRO A 188 SER A 201 1 14 HELIX 6 AA6 GLY A 220 ARG A 238 1 19 HELIX 7 AA7 ASP A 240 VAL A 244 5 5 HELIX 8 AA8 ASP A 245 ARG A 254 1 10 HELIX 9 AA9 THR A 263 ILE A 281 1 19 SHEET 1 AA1 9 ARG A 56 LYS A 58 0 SHEET 2 AA1 9 TYR A 66 MET A 74 -1 O ALA A 69 N ILE A 57 SHEET 3 AA1 9 ARG A 79 THR A 84 -1 O TYR A 81 N ILE A 72 SHEET 4 AA1 9 VAL A 211 HIS A 214 1 O VAL A 213 N ILE A 82 SHEET 5 AA1 9 GLY A 106 MET A 109 1 N VAL A 108 O VAL A 212 SHEET 6 AA1 9 THR A 168 TYR A 176 1 O PHE A 174 N VAL A 107 SHEET 7 AA1 9 TYR A 153 ASN A 162 -1 N ARG A 156 O HIS A 173 SHEET 8 AA1 9 LEU A 140 ILE A 149 -1 N ILE A 145 O GLN A 157 SHEET 9 AA1 9 MET A 133 PHE A 135 -1 N PHE A 135 O LEU A 140 SHEET 1 AA2 2 MET A 114 GLU A 115 0 SHEET 2 AA2 2 SER A 118 LEU A 119 -1 O SER A 118 N GLU A 115 LINK OE1CGLN A 61 C CASN A 64 1555 1555 1.19 LINK OE1DGLN A 61 C DASN A 64 1555 1555 1.19 SITE 1 AC1 10 MET A 1 GLU A 2 MET A 235 ASP A 236 SITE 2 AC1 10 PRO A 241 SER A 242 ILE A 281 MET A 282 SITE 3 AC1 10 HOH A 503 HOH A 551 SITE 1 AC2 7 LYS A 41 ASN A 42 ASN A 90 LYS A 239 SITE 2 AC2 7 PRO A 241 MET A 282 ASP A 284 SITE 1 AC3 4 ASP A 29 ARG A 33 ILE A 145 HOH A 516 SITE 1 AC4 6 HIS A 54 LYS A 128 GLU A 129 GLU A 130 SITE 2 AC4 6 HOH A 501 HOH A 614 CRYST1 89.991 89.991 106.753 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011112 0.006416 0.000000 0.00000 SCALE2 0.000000 0.012831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009367 0.00000 CONECT 3723 3879 CONECT 3724 3880 CONECT 3879 3723 CONECT 3880 3724 CONECT15850158701587215878 CONECT15851158711587315879 CONECT15852158741587615880 CONECT15853158751587715881 CONECT1585415856 CONECT1585515857 CONECT15856158541585815860 CONECT15857158551585915861 CONECT1585815856 CONECT1585915857 CONECT15860158561586215868 CONECT15861158571586315869 CONECT15862158601586415882 CONECT15863158611586515883 CONECT15864158621586615884 CONECT15865158631586715885 CONECT15866158641586815870 CONECT15867158651586915871 CONECT158681586015866 CONECT158691586115867 CONECT15870158501586615876 CONECT15871158511586715877 CONECT15872158501587415886 CONECT15873158511587515887 CONECT15874158521587215888 CONECT15875158531587315889 CONECT15876158521587015890 CONECT15877158531587115891 CONECT1587815850 CONECT1587915851 CONECT1588015852 CONECT1588115853 CONECT1588215862 CONECT1588315863 CONECT1588415864 CONECT1588515865 CONECT1588615872 CONECT1588715873 CONECT1588815874 CONECT1588915875 CONECT1589015876 CONECT1589115877 CONECT15892159121591415920 CONECT15893159131591515921 CONECT15894159161591815922 CONECT15895159171591915923 CONECT1589615898 CONECT1589715899 CONECT15898158961590015902 CONECT15899158971590115903 CONECT1590015898 CONECT1590115899 CONECT15902158981590415910 CONECT15903158991590515911 CONECT15904159021590615924 CONECT15905159031590715925 CONECT15906159041590815926 CONECT15907159051590915927 CONECT15908159061591015912 CONECT15909159071591115913 CONECT159101590215908 CONECT159111590315909 CONECT15912158921590815918 CONECT15913158931590915919 CONECT15914158921591615928 CONECT15915158931591715929 CONECT15916158941591415930 CONECT15917158951591515931 CONECT15918158941591215932 CONECT15919158951591315933 CONECT1592015892 CONECT1592115893 CONECT1592215894 CONECT1592315895 CONECT1592415904 CONECT1592515905 CONECT1592615906 CONECT1592715907 CONECT1592815914 CONECT1592915915 CONECT1593015916 CONECT1593115917 CONECT1593215918 CONECT1593315919 CONECT15934159541595615962 CONECT15935159551595715963 CONECT15936159581596015964 CONECT15937159591596115965 CONECT1593815940 CONECT1593915941 CONECT15940159381594215944 CONECT15941159391594315945 CONECT1594215940 CONECT1594315941 CONECT15944159401594615952 CONECT15945159411594715953 CONECT15946159441594815966 CONECT15947159451594915967 CONECT15948159461595015968 CONECT15949159471595115969 CONECT15950159481595215954 CONECT15951159491595315955 CONECT159521594415950 CONECT159531594515951 CONECT15954159341595015960 CONECT15955159351595115961 CONECT15956159341595815970 CONECT15957159351595915971 CONECT15958159361595615972 CONECT15959159371595715973 CONECT15960159361595415974 CONECT15961159371595515975 CONECT1596215934 CONECT1596315935 CONECT1596415936 CONECT1596515937 CONECT1596615946 CONECT1596715947 CONECT1596815948 CONECT1596915949 CONECT1597015956 CONECT1597115957 CONECT1597215958 CONECT1597315959 CONECT1597415960 CONECT1597515961 CONECT1597615977159781597915980 CONECT1597715976159811598415985 CONECT1597815976159821598615987 CONECT1597915976159831598815989 CONECT1598015976159901599115992 CONECT159811597715993 CONECT159821597815994 CONECT159831597915995 CONECT1598415977 CONECT1598515977 CONECT1598615978 CONECT1598715978 CONECT1598815979 CONECT1598915979 CONECT1599015980 CONECT1599115980 CONECT1599215980 CONECT1599315981 CONECT1599415982 CONECT1599515983 MASTER 465 0 4 9 11 0 8 6 2640 1 150 25 END