HEADER OXIDOREDUCTASE 22-MAY-18 5QIH TITLE PANDDA ANALYSIS GROUP DEPOSITION OF MODELS WITH MODELLED EVENTS (E.G. TITLE 2 BOUND LIGANDS) -- CRYSTAL STRUCTURE OF HAO1 IN COMPLEX WITH TITLE 3 Z2697514548 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYACID OXIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAOX1,GLYCOLATE OXIDASE,GOX; COMPND 5 EC: 1.1.3.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HAO1, GOX1, HAOX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PANDDA, SGC - DIAMOND I04-1 FRAGMENT SCREENING, HAO1, XCHEMEXPLORER, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MACKINNON,G.A.BEZERRA,T.KROJER,A.R.BRADLEY,R.TALON,J.BRANDAO-NETO, AUTHOR 2 A.DOUANGAMATH,F.VON DELFT,C.H.ARROWSMITH,A.EDWARDS,C.BOUNTRA, AUTHOR 3 U.OPPERMANN,P.E.BRENNAN,W.W.YUE REVDAT 3 06-MAR-24 5QIH 1 REMARK REVDAT 2 15-AUG-18 5QIH 1 REMARK REVDAT 1 18-JUL-18 5QIH 0 JRNL AUTH S.MACKINNON,G.A.BEZERRA,T.KROJER,A.R.BRADLEY,R.TALON, JRNL AUTH 2 J.BRANDAO-NETO,A.DOUANGAMATH,F.VON DELFT,C.H.ARROWSMITH, JRNL AUTH 3 A.EDWARDS,C.BOUNTRA,U.OPPERMANN,P.E.BRENNAN,W.W.YUE JRNL TITL PANDDA ANALYSIS GROUP DEPOSITION OF MODELS WITH MODELLED JRNL TITL 2 EVENTS (E.G. BOUND LIGANDS) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 79860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4284 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4842 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 256 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.55000 REMARK 3 B22 (A**2) : -0.55000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.196 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6520 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4581 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6791 ; 1.871 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10548 ; 1.073 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 693 ; 6.691 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;29.202 ;22.618 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 801 ;13.296 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;14.318 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 750 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6060 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1090 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3432 ; 1.180 ; 1.815 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3433 ; 1.180 ; 1.815 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3331 ; 2.004 ; 2.670 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5QIH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1001401990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84167 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 40.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.65800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2NZL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MIB PH 5.75 - 7.0, 27.5-35% REMARK 280 PEG1000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.73000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.73000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.26000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.73000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.73000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.26000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 48.73000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 48.73000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.26000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 48.73000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 48.73000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.26000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 PRO A 3 REMARK 465 GLU A 187 REMARK 465 THR A 188 REMARK 465 SER A 189 REMARK 465 THR A 190 REMARK 465 LEU A 191 REMARK 465 SER A 192 REMARK 465 PHE A 193 REMARK 465 SER A 194 REMARK 465 PRO A 195 REMARK 465 GLU A 196 REMARK 465 GLU A 197 REMARK 465 ASN A 198 REMARK 465 PHE A 199 REMARK 465 GLY A 200 REMARK 465 ASP A 201 REMARK 465 ASN A 363 REMARK 465 PRO A 364 REMARK 465 LEU A 365 REMARK 465 ALA A 366 REMARK 465 VAL A 367 REMARK 465 SER A 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CD NE CZ NH1 NH2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 ASP A 202 CG OD1 OD2 REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 LYS A 353 CG CD CE NZ REMARK 470 LYS A 357 CG CD CE NZ REMARK 470 LYS A 362 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 50 CE1 TYR A 50 CZ -0.097 REMARK 500 VAL A 274 CB VAL A 274 CG2 -0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 10 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 96 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR A 132 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 136 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 MET A 150 CG - SD - CE ANGL. DEV. = 10.9 DEGREES REMARK 500 MET A 150 CG - SD - CE ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 240 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 240 NE - CZ - NH2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 331 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 341 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 341 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 32 -127.15 53.74 REMARK 500 ASN A 32 -127.15 53.74 REMARK 500 ASN A 32 -127.15 53.80 REMARK 500 ASN A 32 -127.15 53.80 REMARK 500 ASN A 56 87.12 79.61 REMARK 500 ASN A 56 87.12 79.61 REMARK 500 ASN A 56 99.16 54.48 REMARK 500 ASN A 56 99.16 54.48 REMARK 500 PRO A 74 44.85 -87.99 REMARK 500 GLN A 264 -101.69 -105.93 REMARK 500 GLN A 264 -101.69 -105.93 REMARK 500 GLN A 264 -101.69 -111.06 REMARK 500 GLN A 264 -101.69 -111.06 REMARK 500 GLN A 324 39.76 -159.47 REMARK 500 GLN A 324 39.76 -159.47 REMARK 500 GLN A 324 38.01 -168.03 REMARK 500 GLN A 324 38.01 -168.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GWG A 402 DBREF 5QIH A 1 368 UNP Q9UJM8 HAOX1_HUMAN 1 368 SEQADV 5QIH SER A 0 UNP Q9UJM8 EXPRESSION TAG SEQRES 1 A 369 SER MET LEU PRO ARG LEU ILE CYS ILE ASN ASP TYR GLU SEQRES 2 A 369 GLN HIS ALA LYS SER VAL LEU PRO LYS SER ILE TYR ASP SEQRES 3 A 369 TYR TYR ARG SER GLY ALA ASN ASP GLU GLU THR LEU ALA SEQRES 4 A 369 ASP ASN ILE ALA ALA PHE SER ARG TRP LYS LEU TYR PRO SEQRES 5 A 369 ARG MET LEU ARG ASN VAL ALA GLU THR ASP LEU SER THR SEQRES 6 A 369 SER VAL LEU GLY GLN ARG VAL SER MET PRO ILE CYS VAL SEQRES 7 A 369 GLY ALA THR ALA MET GLN ARG MET ALA HIS VAL ASP GLY SEQRES 8 A 369 GLU LEU ALA THR VAL ARG ALA CYS GLN SER LEU GLY THR SEQRES 9 A 369 GLY MET MET LEU SER SER TRP ALA THR SER SER ILE GLU SEQRES 10 A 369 GLU VAL ALA GLU ALA GLY PRO GLU ALA LEU ARG TRP LEU SEQRES 11 A 369 GLN LEU TYR ILE TYR LYS ASP ARG GLU VAL THR LYS LYS SEQRES 12 A 369 LEU VAL ARG GLN ALA GLU LYS MET GLY TYR LYS ALA ILE SEQRES 13 A 369 PHE VAL THR VAL ASP THR PRO TYR LEU GLY ASN ARG LEU SEQRES 14 A 369 ASP ASP VAL ARG ASN ARG PHE LYS LEU PRO PRO GLN LEU SEQRES 15 A 369 ARG MET LYS ASN PHE GLU THR SER THR LEU SER PHE SER SEQRES 16 A 369 PRO GLU GLU ASN PHE GLY ASP ASP SER GLY LEU ALA ALA SEQRES 17 A 369 TYR VAL ALA LYS ALA ILE ASP PRO SER ILE SER TRP GLU SEQRES 18 A 369 ASP ILE LYS TRP LEU ARG ARG LEU THR SER LEU PRO ILE SEQRES 19 A 369 VAL ALA LYS GLY ILE LEU ARG GLY ASP ASP ALA ARG GLU SEQRES 20 A 369 ALA VAL LYS HIS GLY LEU ASN GLY ILE LEU VAL SER ASN SEQRES 21 A 369 HIS GLY ALA ARG GLN LEU ASP GLY VAL PRO ALA THR ILE SEQRES 22 A 369 ASP VAL LEU PRO GLU ILE VAL GLU ALA VAL GLU GLY LYS SEQRES 23 A 369 VAL GLU VAL PHE LEU ASP GLY GLY VAL ARG LYS GLY THR SEQRES 24 A 369 ASP VAL LEU LYS ALA LEU ALA LEU GLY ALA LYS ALA VAL SEQRES 25 A 369 PHE VAL GLY ARG PRO ILE VAL TRP GLY LEU ALA PHE GLN SEQRES 26 A 369 GLY GLU LYS GLY VAL GLN ASP VAL LEU GLU ILE LEU LYS SEQRES 27 A 369 GLU GLU PHE ARG LEU ALA MET ALA LEU SER GLY CYS GLN SEQRES 28 A 369 ASN VAL LYS VAL ILE ASP LYS THR LEU VAL ARG LYS ASN SEQRES 29 A 369 PRO LEU ALA VAL SER HET FMN A 401 31 HET GWG A 402 26 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM GWG 1-METHYLINDAZOLE-3-CARBOXAMIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 GWG C9 H9 N3 O FORMUL 4 HOH *133(H2 O) HELIX 1 AA1 CYS A 7 LEU A 19 1 13 HELIX 2 AA2 PRO A 20 SER A 29 1 10 HELIX 3 AA3 GLU A 34 TRP A 47 1 14 HELIX 4 AA4 MET A 82 ALA A 86 5 5 HELIX 5 AA5 ASP A 89 GLY A 102 1 14 HELIX 6 AA6 SER A 114 GLY A 122 1 9 HELIX 7 AA7 ASP A 136 MET A 150 1 15 HELIX 8 AA8 ARG A 167 ASN A 173 1 7 HELIX 9 AA9 SER A 203 ILE A 213 1 11 HELIX 10 AB1 SER A 218 THR A 229 1 12 HELIX 11 AB2 ARG A 240 HIS A 250 1 11 HELIX 12 AB3 ALA A 270 GLU A 283 1 14 HELIX 13 AB4 LYS A 296 LEU A 306 1 11 HELIX 14 AB5 GLY A 314 GLY A 348 1 35 HELIX 15 AB6 ASN A 351 ILE A 355 5 5 HELIX 16 AB7 ASP A 356 THR A 358 5 3 SHEET 1 AA1 2 LYS A 48 LEU A 49 0 SHEET 2 AA1 2 VAL A 360 ARG A 361 -1 O ARG A 361 N LYS A 48 SHEET 1 AA2 2 THR A 64 VAL A 66 0 SHEET 2 AA2 2 GLN A 69 VAL A 71 -1 O GLN A 69 N VAL A 66 SHEET 1 AA3 9 ILE A 75 VAL A 77 0 SHEET 2 AA3 9 GLY A 104 LEU A 107 1 O GLY A 104 N VAL A 77 SHEET 3 AA3 9 LEU A 126 LEU A 131 1 O TRP A 128 N LEU A 107 SHEET 4 AA3 9 ILE A 155 THR A 158 1 O PHE A 156 N LEU A 129 SHEET 5 AA3 9 ILE A 233 ILE A 238 1 O LYS A 236 N VAL A 157 SHEET 6 AA3 9 GLY A 254 VAL A 257 1 O LEU A 256 N ALA A 235 SHEET 7 AA3 9 GLU A 287 ASP A 291 1 O PHE A 289 N ILE A 255 SHEET 8 AA3 9 ALA A 310 VAL A 313 1 O PHE A 312 N LEU A 290 SHEET 9 AA3 9 ILE A 75 VAL A 77 1 N CYS A 76 O VAL A 311 SITE 1 AC1 24 TYR A 26 TYR A 27 ALA A 79 THR A 80 SITE 2 AC1 24 ALA A 81 SER A 108 GLN A 130 TYR A 132 SITE 3 AC1 24 THR A 158 LYS A 236 SER A 258 HIS A 260 SITE 4 AC1 24 GLY A 261 ARG A 263 ASP A 291 GLY A 292 SITE 5 AC1 24 GLY A 293 ARG A 295 GLY A 314 ARG A 315 SITE 6 AC1 24 GWG A 402 HOH A 532 HOH A 572 HOH A 591 SITE 1 AC2 11 TYR A 26 ALA A 81 MET A 82 TRP A 110 SITE 2 AC2 11 TYR A 132 LEU A 164 MET A 183 LEU A 205 SITE 3 AC2 11 HIS A 260 FMN A 401 HOH A 501 CRYST1 97.460 97.460 80.520 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010261 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012419 0.00000