data_5QIX # _entry.id 5QIX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5QIX WWPDB D_1001402006 # _pdbx_database_status.entry_id 5QIX _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2018-08-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sethi, R.' 1 ? 'Douangamath, A.' 2 ? 'Resnick, E.' 3 ? 'Bradley, A.R.' 4 ? 'Collins, P.' 5 ? 'Brandao-Neto, J.' 6 ? 'Talon, R.' 7 ? 'Krojer, T.' 8 ? 'Bountra, C.' 9 ? 'Arrowsmith, C.H.' 10 ? 'Edwards, A.' 11 ? 'London, N.' 12 ? 'von Delft, F.' 13 ? # _citation.id primary _citation.title 'Covalent fragment group deposition' _citation.journal_abbrev 'To Be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Sethi, R.' ? 1 primary 'Douangamath, A.' ? 2 primary 'Resnick, E.' ? 3 primary 'Bradley, A.R.' ? 4 primary 'Collins, P.' ? 5 primary 'Brandao-Neto, J.' ? 6 primary 'Talon, R.' ? 7 primary 'Krojer, T.' ? 8 primary 'Bountra, C.' ? 9 primary 'Arrowsmith, C.H.' ? 10 primary 'Edwards, A.' ? 11 primary 'London, N.' ? 12 primary 'von Delft, F.' ? 13 # _cell.entry_id 5QIX _cell.length_a 47.554 _cell.length_b 58.334 _cell.length_c 50.333 _cell.angle_alpha 90.000 _cell.angle_beta 116.380 _cell.angle_gamma 90.000 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QIX _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin thioesterase OTUB2' 26362.008 1 3.4.19.12 ? ? ? 2 non-polymer syn 'N-(3-phenylprop-2-yn-1-yl)acetamide' 173.211 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 7 ? ? ? ? 4 non-polymer syn 'UNKNOWN LIGAND' ? 3 ? ? ? ? 5 water nat water 18.015 256 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Deubiquitinating enzyme OTUB2,OTU domain-containing ubiquitin aldehyde-binding protein 2,Otubain-2,Ubiquitin-specific-processing protease OTUB2 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;FNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDL LAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCT HEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYA ; _entity_poly.pdbx_seq_one_letter_code_can ;FNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDL LAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCT HEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 ASN n 1 3 LEU n 1 4 ILE n 1 5 SER n 1 6 GLU n 1 7 LYS n 1 8 CYS n 1 9 ASP n 1 10 ILE n 1 11 LEU n 1 12 SER n 1 13 ILE n 1 14 LEU n 1 15 ARG n 1 16 ASP n 1 17 HIS n 1 18 PRO n 1 19 GLU n 1 20 ASN n 1 21 ARG n 1 22 ILE n 1 23 TYR n 1 24 ARG n 1 25 ARG n 1 26 LYS n 1 27 ILE n 1 28 GLU n 1 29 GLU n 1 30 LEU n 1 31 SER n 1 32 LYS n 1 33 ARG n 1 34 PHE n 1 35 THR n 1 36 ALA n 1 37 ILE n 1 38 ARG n 1 39 LYS n 1 40 THR n 1 41 LYS n 1 42 GLY n 1 43 ASP n 1 44 ARG n 1 45 ASN n 1 46 CYS n 1 47 PHE n 1 48 TYR n 1 49 ARG n 1 50 ALA n 1 51 LEU n 1 52 GLY n 1 53 TYR n 1 54 SER n 1 55 TYR n 1 56 LEU n 1 57 GLU n 1 58 SER n 1 59 LEU n 1 60 LEU n 1 61 GLY n 1 62 LYS n 1 63 SER n 1 64 ARG n 1 65 GLU n 1 66 ILE n 1 67 PHE n 1 68 LYS n 1 69 PHE n 1 70 LYS n 1 71 GLU n 1 72 ARG n 1 73 VAL n 1 74 LEU n 1 75 GLN n 1 76 THR n 1 77 PRO n 1 78 ASN n 1 79 ASP n 1 80 LEU n 1 81 LEU n 1 82 ALA n 1 83 ALA n 1 84 GLY n 1 85 PHE n 1 86 GLU n 1 87 GLU n 1 88 HIS n 1 89 LYS n 1 90 PHE n 1 91 ARG n 1 92 ASN n 1 93 PHE n 1 94 PHE n 1 95 ASN n 1 96 ALA n 1 97 PHE n 1 98 TYR n 1 99 SER n 1 100 VAL n 1 101 VAL n 1 102 GLU n 1 103 LEU n 1 104 VAL n 1 105 GLU n 1 106 LYS n 1 107 ASP n 1 108 GLY n 1 109 SER n 1 110 VAL n 1 111 SER n 1 112 SER n 1 113 LEU n 1 114 LEU n 1 115 LYS n 1 116 VAL n 1 117 PHE n 1 118 ASN n 1 119 ASP n 1 120 GLN n 1 121 SER n 1 122 ALA n 1 123 SER n 1 124 ASP n 1 125 HIS n 1 126 ILE n 1 127 VAL n 1 128 GLN n 1 129 PHE n 1 130 LEU n 1 131 ARG n 1 132 LEU n 1 133 LEU n 1 134 THR n 1 135 SER n 1 136 ALA n 1 137 PHE n 1 138 ILE n 1 139 ARG n 1 140 ASN n 1 141 ARG n 1 142 ALA n 1 143 ASP n 1 144 PHE n 1 145 PHE n 1 146 ARG n 1 147 HIS n 1 148 PHE n 1 149 ILE n 1 150 ASP n 1 151 GLU n 1 152 GLU n 1 153 MET n 1 154 ASP n 1 155 ILE n 1 156 LYS n 1 157 ASP n 1 158 PHE n 1 159 CYS n 1 160 THR n 1 161 HIS n 1 162 GLU n 1 163 VAL n 1 164 GLU n 1 165 PRO n 1 166 MET n 1 167 ALA n 1 168 THR n 1 169 GLU n 1 170 CYS n 1 171 ASP n 1 172 HIS n 1 173 ILE n 1 174 GLN n 1 175 ILE n 1 176 THR n 1 177 ALA n 1 178 LEU n 1 179 SER n 1 180 GLN n 1 181 ALA n 1 182 LEU n 1 183 SER n 1 184 ILE n 1 185 ALA n 1 186 LEU n 1 187 GLN n 1 188 VAL n 1 189 GLU n 1 190 TYR n 1 191 VAL n 1 192 ASP n 1 193 GLU n 1 194 MET n 1 195 ASP n 1 196 THR n 1 197 ALA n 1 198 LEU n 1 199 ASN n 1 200 HIS n 1 201 HIS n 1 202 VAL n 1 203 PHE n 1 204 PRO n 1 205 GLU n 1 206 ALA n 1 207 ALA n 1 208 THR n 1 209 PRO n 1 210 SER n 1 211 VAL n 1 212 TYR n 1 213 LEU n 1 214 LEU n 1 215 TYR n 1 216 LYS n 1 217 THR n 1 218 SER n 1 219 HIS n 1 220 TYR n 1 221 ASN n 1 222 ILE n 1 223 LEU n 1 224 TYR n 1 225 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 225 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'OTUB2, C14orf137, OTB2, OTU2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OTUB2_HUMAN _struct_ref.pdbx_db_accession Q96DC9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;FNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDL LAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCT HEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYA ; _struct_ref.pdbx_align_begin 6 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5QIX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 225 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q96DC9 _struct_ref_seq.db_align_beg 6 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 230 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 6 _struct_ref_seq.pdbx_auth_seq_align_end 230 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5QIX _struct_ref_seq_dif.mon_id ARG _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 44 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q96DC9 _struct_ref_seq_dif.db_mon_id GLY _struct_ref_seq_dif.pdbx_seq_db_seq_num 49 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 49 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 J5V non-polymer . 'N-(3-phenylprop-2-yn-1-yl)acetamide' ? 'C11 H11 N O' 173.211 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 5QIX _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.060 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 48.15 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '16% PEG4K, 0.1M HEPES pH 7.0, 8% 2-propanol, 5 mM DTT' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? # _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2017-06-28 _diffrn_detector.diffrn_id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92819 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_wavelength_list 0.92819 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5QIX _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 29.170 _reflns.d_resolution_high 1.390 _reflns.number_obs 48731 _reflns.number_all ? _reflns.percent_possible_obs 98.400 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.100 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.300 _reflns.pdbx_Rrim_I_all 0.088 _reflns.pdbx_Rpim_I_all 0.047 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 162790 _reflns.pdbx_scaling_rejects 0 _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.390 1.430 ? 9831 ? ? 0.621 ? ? ? 2.800 ? 1.500 ? 3505 ? ? ? ? 96.300 0.773 0.453 0.629 1 2 6.220 29.170 ? 2017 ? ? 0.038 ? ? ? 3.400 ? 29.200 ? 587 ? ? ? ? 98.500 0.045 0.024 0.997 # _refine.entry_id 5QIX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.3900 _refine.ls_d_res_low 29.1800 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.1300 _refine.ls_number_reflns_obs 46522 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1494 _refine.ls_R_factor_R_work 0.1471 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1978 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.5000 _refine.ls_number_reflns_R_free 2189 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 14.2220 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0400 _refine.aniso_B[2][2] 0.4000 _refine.aniso_B[3][3] -0.1800 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0900 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9720 _refine.correlation_coeff_Fo_to_Fc_free 0.9520 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0590 _refine.pdbx_overall_ESU_R_Free 0.0600 _refine.overall_SU_ML 0.0530 _refine.overall_SU_B 3.0750 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1TFF _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 90.490 _refine.B_iso_min 4.940 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.3900 _refine_hist.d_res_low 29.1800 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 256 _refine_hist.number_atoms_total 2120 _refine_hist.pdbx_number_residues_total 223 _refine_hist.pdbx_B_iso_mean_ligand 30.67 _refine_hist.pdbx_B_iso_mean_solvent 27.60 _refine_hist.pdbx_number_atoms_protein 1820 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1929 0.020 0.014 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1734 0.001 0.017 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2592 2.084 1.662 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 4054 1.113 1.667 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 237 12.456 5.148 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 109 32.362 21.560 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 332 12.544 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14 19.625 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 249 0.103 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2233 0.012 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 392 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 904 2.206 1.105 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 905 2.205 1.105 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1133 2.819 1.666 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 3663 12.475 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 179 32.912 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 3701 18.967 5.000 ? ? # _refine_ls_shell.d_res_high 1.3900 _refine_ls_shell.d_res_low 1.4260 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.0100 _refine_ls_shell.number_reflns_R_work 3309 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2240 _refine_ls_shell.R_factor_R_free 0.2770 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 184 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3493 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # _struct.entry_id 5QIX _struct.title 'Covalent fragment group deposition -- Crystal Structure of OUTB2 in complex with PCM-0103007' _struct.pdbx_descriptor 'Ubiquitin thioesterase OTUB2 (E.C.3.4.19.12)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5QIX _struct_keywords.text ;SGC - Diamond I04-1 fragment screening, XChemExplorer, PROTEASE OTUB2, DEUBIQUITINATING ENZYME OTUB2, hydrolase-hydrolase inhibitor complex ; _struct_keywords.pdbx_keywords 'hydrolase/hydrolase inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 11 ? HIS A 17 ? LEU A 16 HIS A 22 5 ? 7 HELX_P HELX_P2 AA2 ASN A 20 ? SER A 31 ? ASN A 25 SER A 36 1 ? 12 HELX_P HELX_P3 AA3 ASN A 45 ? LEU A 60 ? ASN A 50 LEU A 65 1 ? 16 HELX_P HELX_P4 AA4 LYS A 62 ? ALA A 83 ? LYS A 67 ALA A 88 1 ? 22 HELX_P HELX_P5 AA5 GLU A 86 ? ASP A 107 ? GLU A 91 ASP A 112 1 ? 22 HELX_P HELX_P6 AA6 SER A 109 ? ASP A 119 ? SER A 114 ASP A 124 1 ? 11 HELX_P HELX_P7 AA7 ASP A 119 ? ARG A 141 ? ASP A 124 ARG A 146 1 ? 23 HELX_P HELX_P8 AA8 ARG A 141 ? ARG A 146 ? ARG A 146 ARG A 151 1 ? 6 HELX_P HELX_P9 AA9 ASP A 154 ? VAL A 163 ? ASP A 159 VAL A 168 1 ? 10 HELX_P HELX_P10 AB1 ASP A 171 ? SER A 183 ? ASP A 176 SER A 188 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 46 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id J5V _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 51 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id J5V _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.668 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 203 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 208 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 204 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 209 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.86 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 CYS A 8 ? ASP A 9 ? CYS A 13 ASP A 14 AA1 2 ALA A 36 ? ARG A 38 ? ALA A 41 ARG A 43 AA1 3 HIS A 219 ? TYR A 224 ? HIS A 224 TYR A 229 AA1 4 VAL A 211 ? LYS A 216 ? VAL A 216 LYS A 221 AA1 5 LEU A 186 ? TYR A 190 ? LEU A 191 TYR A 195 AA1 6 ASN A 199 ? PHE A 203 ? ASN A 204 PHE A 208 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N CYS A 8 ? N CYS A 13 O ILE A 37 ? O ILE A 42 AA1 2 3 N ARG A 38 ? N ARG A 43 O ILE A 222 ? O ILE A 227 AA1 3 4 O LEU A 223 ? O LEU A 228 N TYR A 212 ? N TYR A 217 AA1 4 5 O LEU A 213 ? O LEU A 218 N GLU A 189 ? N GLU A 194 AA1 5 6 N LEU A 186 ? N LEU A 191 O PHE A 203 ? O PHE A 208 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A J5V 301 ? 9 'binding site for residue J5V A 301' AC2 Software A EDO 302 ? 4 'binding site for residue EDO A 302' AC3 Software A EDO 303 ? 7 'binding site for residue EDO A 303' AC4 Software A EDO 304 ? 1 'binding site for residue EDO A 304' AC5 Software A EDO 305 ? 2 'binding site for residue EDO A 305' AC6 Software A EDO 306 ? 5 'binding site for residue EDO A 306' AC7 Software A EDO 307 ? 7 'binding site for residue EDO A 307' AC8 Software A EDO 308 ? 8 'binding site for residue EDO A 308' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 GLY A 42 ? GLY A 47 . ? 1_555 ? 2 AC1 9 ASP A 43 ? ASP A 48 . ? 1_555 ? 3 AC1 9 ARG A 44 ? ARG A 49 . ? 1_555 ? 4 AC1 9 ASN A 45 ? ASN A 50 . ? 1_555 ? 5 AC1 9 CYS A 46 ? CYS A 51 . ? 1_555 ? 6 AC1 9 GLU A 169 ? GLU A 174 . ? 1_555 ? 7 AC1 9 THR A 217 ? THR A 222 . ? 1_555 ? 8 AC1 9 SER A 218 ? SER A 223 . ? 1_555 ? 9 AC1 9 HIS A 219 ? HIS A 224 . ? 1_555 ? 10 AC2 4 PHE A 1 ? PHE A 6 . ? 1_555 ? 11 AC2 4 ASN A 2 ? ASN A 7 . ? 1_555 ? 12 AC2 4 SER A 5 ? SER A 10 . ? 1_555 ? 13 AC2 4 LYS A 39 ? LYS A 44 . ? 1_555 ? 14 AC3 7 ARG A 72 ? ARG A 77 . ? 1_555 ? 15 AC3 7 PHE A 137 ? PHE A 142 . ? 1_555 ? 16 AC3 7 GLN A 180 ? GLN A 185 . ? 1_555 ? 17 AC3 7 ALA A 181 ? ALA A 186 . ? 1_555 ? 18 AC3 7 SER A 183 ? SER A 188 . ? 1_555 ? 19 AC3 7 HOH M . ? HOH A 435 . ? 1_555 ? 20 AC3 7 HOH M . ? HOH A 489 . ? 1_555 ? 21 AC4 1 HIS A 88 ? HIS A 93 . ? 1_555 ? 22 AC5 2 ASN A 95 ? ASN A 100 . ? 1_555 ? 23 AC5 2 HOH M . ? HOH A 416 . ? 1_555 ? 24 AC6 5 ARG A 24 ? ARG A 29 . ? 1_555 ? 25 AC6 5 ASN A 140 ? ASN A 145 . ? 1_656 ? 26 AC6 5 HOH M . ? HOH A 419 . ? 1_555 ? 27 AC6 5 HOH M . ? HOH A 496 . ? 1_555 ? 28 AC6 5 HOH M . ? HOH A 577 . ? 1_656 ? 29 AC7 7 SER A 109 ? SER A 114 . ? 1_555 ? 30 AC7 7 SER A 111 ? SER A 116 . ? 1_555 ? 31 AC7 7 SER A 112 ? SER A 117 . ? 1_555 ? 32 AC7 7 LYS A 115 ? LYS A 120 . ? 1_555 ? 33 AC7 7 ASP A 154 ? ASP A 159 . ? 1_655 ? 34 AC7 7 HOH M . ? HOH A 401 . ? 1_555 ? 35 AC7 7 HOH M . ? HOH A 597 . ? 1_655 ? 36 AC8 8 LEU A 11 ? LEU A 16 . ? 1_454 ? 37 AC8 8 LEU A 14 ? LEU A 19 . ? 1_454 ? 38 AC8 8 ASN A 78 ? ASN A 83 . ? 1_555 ? 39 AC8 8 ALA A 82 ? ALA A 87 . ? 1_555 ? 40 AC8 8 HOH M . ? HOH A 406 . ? 1_555 ? 41 AC8 8 HOH M . ? HOH A 438 . ? 1_555 ? 42 AC8 8 HOH M . ? HOH A 519 . ? 1_454 ? 43 AC8 8 HOH M . ? HOH A 571 . ? 1_555 ? # _atom_sites.entry_id 5QIX _atom_sites.fract_transf_matrix[1][1] 0.021029 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010429 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017143 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022177 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 6 6 PHE PHE A . n A 1 2 ASN 2 7 7 ASN ASN A . n A 1 3 LEU 3 8 8 LEU LEU A . n A 1 4 ILE 4 9 9 ILE ILE A . n A 1 5 SER 5 10 10 SER SER A . n A 1 6 GLU 6 11 11 GLU GLU A . n A 1 7 LYS 7 12 12 LYS LYS A . n A 1 8 CYS 8 13 13 CYS CYS A . n A 1 9 ASP 9 14 14 ASP ASP A . n A 1 10 ILE 10 15 15 ILE ILE A . n A 1 11 LEU 11 16 16 LEU LEU A . n A 1 12 SER 12 17 17 SER SER A . n A 1 13 ILE 13 18 18 ILE ILE A . n A 1 14 LEU 14 19 19 LEU LEU A . n A 1 15 ARG 15 20 20 ARG ARG A . n A 1 16 ASP 16 21 21 ASP ASP A . n A 1 17 HIS 17 22 22 HIS HIS A . n A 1 18 PRO 18 23 23 PRO PRO A . n A 1 19 GLU 19 24 24 GLU GLU A . n A 1 20 ASN 20 25 25 ASN ASN A . n A 1 21 ARG 21 26 26 ARG ARG A . n A 1 22 ILE 22 27 27 ILE ILE A . n A 1 23 TYR 23 28 28 TYR TYR A . n A 1 24 ARG 24 29 29 ARG ARG A . n A 1 25 ARG 25 30 30 ARG ARG A . n A 1 26 LYS 26 31 31 LYS LYS A . n A 1 27 ILE 27 32 32 ILE ILE A . n A 1 28 GLU 28 33 33 GLU GLU A . n A 1 29 GLU 29 34 34 GLU GLU A . n A 1 30 LEU 30 35 35 LEU LEU A . n A 1 31 SER 31 36 36 SER SER A . n A 1 32 LYS 32 37 37 LYS LYS A . n A 1 33 ARG 33 38 38 ARG ARG A . n A 1 34 PHE 34 39 39 PHE PHE A . n A 1 35 THR 35 40 40 THR THR A . n A 1 36 ALA 36 41 41 ALA ALA A . n A 1 37 ILE 37 42 42 ILE ILE A . n A 1 38 ARG 38 43 43 ARG ARG A . n A 1 39 LYS 39 44 44 LYS LYS A . n A 1 40 THR 40 45 45 THR THR A . n A 1 41 LYS 41 46 46 LYS LYS A . n A 1 42 GLY 42 47 47 GLY GLY A . n A 1 43 ASP 43 48 48 ASP ASP A . n A 1 44 ARG 44 49 49 ARG GLY A . n A 1 45 ASN 45 50 50 ASN ASN A . n A 1 46 CYS 46 51 51 CYS CYS A . n A 1 47 PHE 47 52 52 PHE PHE A . n A 1 48 TYR 48 53 53 TYR TYR A . n A 1 49 ARG 49 54 54 ARG ARG A . n A 1 50 ALA 50 55 55 ALA ALA A . n A 1 51 LEU 51 56 56 LEU LEU A . n A 1 52 GLY 52 57 57 GLY GLY A . n A 1 53 TYR 53 58 58 TYR TYR A . n A 1 54 SER 54 59 59 SER SER A . n A 1 55 TYR 55 60 60 TYR TYR A . n A 1 56 LEU 56 61 61 LEU LEU A . n A 1 57 GLU 57 62 62 GLU GLU A . n A 1 58 SER 58 63 63 SER SER A . n A 1 59 LEU 59 64 64 LEU LEU A . n A 1 60 LEU 60 65 65 LEU LEU A . n A 1 61 GLY 61 66 66 GLY GLY A . n A 1 62 LYS 62 67 67 LYS LYS A . n A 1 63 SER 63 68 68 SER SER A . n A 1 64 ARG 64 69 69 ARG ARG A . n A 1 65 GLU 65 70 70 GLU GLU A . n A 1 66 ILE 66 71 71 ILE ILE A . n A 1 67 PHE 67 72 72 PHE PHE A . n A 1 68 LYS 68 73 73 LYS LYS A . n A 1 69 PHE 69 74 74 PHE PHE A . n A 1 70 LYS 70 75 75 LYS LYS A . n A 1 71 GLU 71 76 76 GLU GLU A . n A 1 72 ARG 72 77 77 ARG ARG A . n A 1 73 VAL 73 78 78 VAL VAL A . n A 1 74 LEU 74 79 79 LEU LEU A . n A 1 75 GLN 75 80 80 GLN GLN A . n A 1 76 THR 76 81 81 THR THR A . n A 1 77 PRO 77 82 82 PRO PRO A . n A 1 78 ASN 78 83 83 ASN ASN A . n A 1 79 ASP 79 84 84 ASP ASP A . n A 1 80 LEU 80 85 85 LEU LEU A . n A 1 81 LEU 81 86 86 LEU LEU A . n A 1 82 ALA 82 87 87 ALA ALA A . n A 1 83 ALA 83 88 88 ALA ALA A . n A 1 84 GLY 84 89 89 GLY GLY A . n A 1 85 PHE 85 90 90 PHE PHE A . n A 1 86 GLU 86 91 91 GLU GLU A . n A 1 87 GLU 87 92 92 GLU GLU A . n A 1 88 HIS 88 93 93 HIS HIS A . n A 1 89 LYS 89 94 94 LYS LYS A . n A 1 90 PHE 90 95 95 PHE PHE A . n A 1 91 ARG 91 96 96 ARG ARG A . n A 1 92 ASN 92 97 97 ASN ASN A . n A 1 93 PHE 93 98 98 PHE PHE A . n A 1 94 PHE 94 99 99 PHE PHE A . n A 1 95 ASN 95 100 100 ASN ASN A . n A 1 96 ALA 96 101 101 ALA ALA A . n A 1 97 PHE 97 102 102 PHE PHE A . n A 1 98 TYR 98 103 103 TYR TYR A . n A 1 99 SER 99 104 104 SER SER A . n A 1 100 VAL 100 105 105 VAL VAL A . n A 1 101 VAL 101 106 106 VAL VAL A . n A 1 102 GLU 102 107 107 GLU GLU A . n A 1 103 LEU 103 108 108 LEU LEU A . n A 1 104 VAL 104 109 109 VAL VAL A . n A 1 105 GLU 105 110 110 GLU GLU A . n A 1 106 LYS 106 111 111 LYS LYS A . n A 1 107 ASP 107 112 112 ASP ASP A . n A 1 108 GLY 108 113 113 GLY GLY A . n A 1 109 SER 109 114 114 SER SER A . n A 1 110 VAL 110 115 115 VAL VAL A . n A 1 111 SER 111 116 116 SER SER A . n A 1 112 SER 112 117 117 SER SER A . n A 1 113 LEU 113 118 118 LEU LEU A . n A 1 114 LEU 114 119 119 LEU LEU A . n A 1 115 LYS 115 120 120 LYS LYS A . n A 1 116 VAL 116 121 121 VAL VAL A . n A 1 117 PHE 117 122 122 PHE PHE A . n A 1 118 ASN 118 123 123 ASN ASN A . n A 1 119 ASP 119 124 124 ASP ASP A . n A 1 120 GLN 120 125 125 GLN GLN A . n A 1 121 SER 121 126 126 SER SER A . n A 1 122 ALA 122 127 127 ALA ALA A . n A 1 123 SER 123 128 128 SER SER A . n A 1 124 ASP 124 129 129 ASP ASP A . n A 1 125 HIS 125 130 130 HIS HIS A . n A 1 126 ILE 126 131 131 ILE ILE A . n A 1 127 VAL 127 132 132 VAL VAL A . n A 1 128 GLN 128 133 133 GLN GLN A . n A 1 129 PHE 129 134 134 PHE PHE A . n A 1 130 LEU 130 135 135 LEU LEU A . n A 1 131 ARG 131 136 136 ARG ARG A . n A 1 132 LEU 132 137 137 LEU LEU A . n A 1 133 LEU 133 138 138 LEU LEU A . n A 1 134 THR 134 139 139 THR THR A . n A 1 135 SER 135 140 140 SER SER A . n A 1 136 ALA 136 141 141 ALA ALA A . n A 1 137 PHE 137 142 142 PHE PHE A . n A 1 138 ILE 138 143 143 ILE ILE A . n A 1 139 ARG 139 144 144 ARG ARG A . n A 1 140 ASN 140 145 145 ASN ASN A . n A 1 141 ARG 141 146 146 ARG ARG A . n A 1 142 ALA 142 147 147 ALA ALA A . n A 1 143 ASP 143 148 148 ASP ASP A . n A 1 144 PHE 144 149 149 PHE PHE A . n A 1 145 PHE 145 150 150 PHE PHE A . n A 1 146 ARG 146 151 151 ARG ARG A . n A 1 147 HIS 147 152 152 HIS HIS A . n A 1 148 PHE 148 153 153 PHE PHE A . n A 1 149 ILE 149 154 154 ILE ILE A . n A 1 150 ASP 150 155 ? ? ? A . n A 1 151 GLU 151 156 ? ? ? A . n A 1 152 GLU 152 157 157 GLU GLU A . n A 1 153 MET 153 158 158 MET MET A . n A 1 154 ASP 154 159 159 ASP ASP A . n A 1 155 ILE 155 160 160 ILE ILE A . n A 1 156 LYS 156 161 161 LYS LYS A . n A 1 157 ASP 157 162 162 ASP ASP A . n A 1 158 PHE 158 163 163 PHE PHE A . n A 1 159 CYS 159 164 164 CYS CYS A . n A 1 160 THR 160 165 165 THR THR A . n A 1 161 HIS 161 166 166 HIS HIS A . n A 1 162 GLU 162 167 167 GLU GLU A . n A 1 163 VAL 163 168 168 VAL VAL A . n A 1 164 GLU 164 169 169 GLU GLU A . n A 1 165 PRO 165 170 170 PRO PRO A . n A 1 166 MET 166 171 171 MET MET A . n A 1 167 ALA 167 172 172 ALA ALA A . n A 1 168 THR 168 173 173 THR THR A . n A 1 169 GLU 169 174 174 GLU GLU A . n A 1 170 CYS 170 175 175 CYS CYS A . n A 1 171 ASP 171 176 176 ASP ASP A . n A 1 172 HIS 172 177 177 HIS HIS A . n A 1 173 ILE 173 178 178 ILE ILE A . n A 1 174 GLN 174 179 179 GLN GLN A . n A 1 175 ILE 175 180 180 ILE ILE A . n A 1 176 THR 176 181 181 THR THR A . n A 1 177 ALA 177 182 182 ALA ALA A . n A 1 178 LEU 178 183 183 LEU LEU A . n A 1 179 SER 179 184 184 SER SER A . n A 1 180 GLN 180 185 185 GLN GLN A . n A 1 181 ALA 181 186 186 ALA ALA A . n A 1 182 LEU 182 187 187 LEU LEU A . n A 1 183 SER 183 188 188 SER SER A . n A 1 184 ILE 184 189 189 ILE ILE A . n A 1 185 ALA 185 190 190 ALA ALA A . n A 1 186 LEU 186 191 191 LEU LEU A . n A 1 187 GLN 187 192 192 GLN GLN A . n A 1 188 VAL 188 193 193 VAL VAL A . n A 1 189 GLU 189 194 194 GLU GLU A . n A 1 190 TYR 190 195 195 TYR TYR A . n A 1 191 VAL 191 196 196 VAL VAL A . n A 1 192 ASP 192 197 197 ASP ASP A . n A 1 193 GLU 193 198 198 GLU GLU A . n A 1 194 MET 194 199 199 MET MET A . n A 1 195 ASP 195 200 200 ASP ASP A . n A 1 196 THR 196 201 201 THR THR A . n A 1 197 ALA 197 202 202 ALA ALA A . n A 1 198 LEU 198 203 203 LEU LEU A . n A 1 199 ASN 199 204 204 ASN ASN A . n A 1 200 HIS 200 205 205 HIS HIS A . n A 1 201 HIS 201 206 206 HIS HIS A . n A 1 202 VAL 202 207 207 VAL VAL A . n A 1 203 PHE 203 208 208 PHE PHE A . n A 1 204 PRO 204 209 209 PRO PRO A . n A 1 205 GLU 205 210 210 GLU ALA A . n A 1 206 ALA 206 211 211 ALA ALA A . n A 1 207 ALA 207 212 212 ALA ALA A . n A 1 208 THR 208 213 213 THR THR A . n A 1 209 PRO 209 214 214 PRO PRO A . n A 1 210 SER 210 215 215 SER SER A . n A 1 211 VAL 211 216 216 VAL VAL A . n A 1 212 TYR 212 217 217 TYR TYR A . n A 1 213 LEU 213 218 218 LEU LEU A . n A 1 214 LEU 214 219 219 LEU LEU A . n A 1 215 TYR 215 220 220 TYR TYR A . n A 1 216 LYS 216 221 221 LYS LYS A . n A 1 217 THR 217 222 222 THR THR A . n A 1 218 SER 218 223 223 SER SER A . n A 1 219 HIS 219 224 224 HIS HIS A . n A 1 220 TYR 220 225 225 TYR TYR A . n A 1 221 ASN 221 226 226 ASN ASN A . n A 1 222 ILE 222 227 227 ILE ILE A . n A 1 223 LEU 223 228 228 LEU LEU A . n A 1 224 TYR 224 229 229 TYR TYR A . n A 1 225 ALA 225 230 230 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J5V 1 301 301 J5V LIG A . C 3 EDO 1 302 501 EDO EDO A . D 3 EDO 1 303 601 EDO EDO A . E 3 EDO 1 304 701 EDO EDO A . F 3 EDO 1 305 801 EDO EDO A . G 3 EDO 1 306 901 EDO EDO A . H 3 EDO 1 307 1001 EDO EDO A . I 3 EDO 1 308 1101 EDO EDO A . J 4 UNL 1 309 1 UNL UNL A . K 4 UNL 1 310 1 UNL UNL A . L 4 UNL 1 311 1 UNL UNL A . M 5 HOH 1 401 365 HOH HOH A . M 5 HOH 2 402 40 HOH HOH A . M 5 HOH 3 403 416 HOH HOH A . M 5 HOH 4 404 419 HOH HOH A . M 5 HOH 5 405 179 HOH HOH A . M 5 HOH 6 406 367 HOH HOH A . M 5 HOH 7 407 388 HOH HOH A . M 5 HOH 8 408 55 HOH HOH A . M 5 HOH 9 409 145 HOH HOH A . M 5 HOH 10 410 357 HOH HOH A . M 5 HOH 11 411 103 HOH HOH A . M 5 HOH 12 412 119 HOH HOH A . M 5 HOH 13 413 170 HOH HOH A . M 5 HOH 14 414 79 HOH HOH A . M 5 HOH 15 415 394 HOH HOH A . M 5 HOH 16 416 320 HOH HOH A . M 5 HOH 17 417 85 HOH HOH A . M 5 HOH 18 418 14 HOH HOH A . M 5 HOH 19 419 376 HOH HOH A . M 5 HOH 20 420 38 HOH HOH A . M 5 HOH 21 421 87 HOH HOH A . M 5 HOH 22 422 99 HOH HOH A . M 5 HOH 23 423 154 HOH HOH A . M 5 HOH 24 424 413 HOH HOH A . M 5 HOH 25 425 19 HOH HOH A . M 5 HOH 26 426 17 HOH HOH A . M 5 HOH 27 427 190 HOH HOH A . M 5 HOH 28 428 26 HOH HOH A . M 5 HOH 29 429 114 HOH HOH A . M 5 HOH 30 430 356 HOH HOH A . M 5 HOH 31 431 262 HOH HOH A . M 5 HOH 32 432 111 HOH HOH A . M 5 HOH 33 433 163 HOH HOH A . M 5 HOH 34 434 405 HOH HOH A . M 5 HOH 35 435 352 HOH HOH A . M 5 HOH 36 436 372 HOH HOH A . M 5 HOH 37 437 344 HOH HOH A . M 5 HOH 38 438 401 HOH HOH A . M 5 HOH 39 439 69 HOH HOH A . M 5 HOH 40 440 399 HOH HOH A . M 5 HOH 41 441 150 HOH HOH A . M 5 HOH 42 442 96 HOH HOH A . M 5 HOH 43 443 89 HOH HOH A . M 5 HOH 44 444 42 HOH HOH A . M 5 HOH 45 445 18 HOH HOH A . M 5 HOH 46 446 168 HOH HOH A . M 5 HOH 47 447 67 HOH HOH A . M 5 HOH 48 448 336 HOH HOH A . M 5 HOH 49 449 83 HOH HOH A . M 5 HOH 50 450 218 HOH HOH A . M 5 HOH 51 451 380 HOH HOH A . M 5 HOH 52 452 36 HOH HOH A . M 5 HOH 53 453 247 HOH HOH A . M 5 HOH 54 454 105 HOH HOH A . M 5 HOH 55 455 2 HOH HOH A . M 5 HOH 56 456 108 HOH HOH A . M 5 HOH 57 457 46 HOH HOH A . M 5 HOH 58 458 31 HOH HOH A . M 5 HOH 59 459 398 HOH HOH A . M 5 HOH 60 460 106 HOH HOH A . M 5 HOH 61 461 24 HOH HOH A . M 5 HOH 62 462 53 HOH HOH A . M 5 HOH 63 463 155 HOH HOH A . M 5 HOH 64 464 27 HOH HOH A . M 5 HOH 65 465 43 HOH HOH A . M 5 HOH 66 466 341 HOH HOH A . M 5 HOH 67 467 351 HOH HOH A . M 5 HOH 68 468 52 HOH HOH A . M 5 HOH 69 469 58 HOH HOH A . M 5 HOH 70 470 33 HOH HOH A . M 5 HOH 71 471 56 HOH HOH A . M 5 HOH 72 472 93 HOH HOH A . M 5 HOH 73 473 343 HOH HOH A . M 5 HOH 74 474 7 HOH HOH A . M 5 HOH 75 475 68 HOH HOH A . M 5 HOH 76 476 178 HOH HOH A . M 5 HOH 77 477 41 HOH HOH A . M 5 HOH 78 478 1 HOH HOH A . M 5 HOH 79 479 32 HOH HOH A . M 5 HOH 80 480 338 HOH HOH A . M 5 HOH 81 481 373 HOH HOH A . M 5 HOH 82 482 379 HOH HOH A . M 5 HOH 83 483 160 HOH HOH A . M 5 HOH 84 484 378 HOH HOH A . M 5 HOH 85 485 30 HOH HOH A . M 5 HOH 86 486 358 HOH HOH A . M 5 HOH 87 487 414 HOH HOH A . M 5 HOH 88 488 151 HOH HOH A . M 5 HOH 89 489 370 HOH HOH A . M 5 HOH 90 490 66 HOH HOH A . M 5 HOH 91 491 412 HOH HOH A . M 5 HOH 92 492 12 HOH HOH A . M 5 HOH 93 493 146 HOH HOH A . M 5 HOH 94 494 35 HOH HOH A . M 5 HOH 95 495 407 HOH HOH A . M 5 HOH 96 496 124 HOH HOH A . M 5 HOH 97 497 116 HOH HOH A . M 5 HOH 98 498 8 HOH HOH A . M 5 HOH 99 499 20 HOH HOH A . M 5 HOH 100 500 337 HOH HOH A . M 5 HOH 101 501 71 HOH HOH A . M 5 HOH 102 502 60 HOH HOH A . M 5 HOH 103 503 48 HOH HOH A . M 5 HOH 104 504 166 HOH HOH A . M 5 HOH 105 505 65 HOH HOH A . M 5 HOH 106 506 374 HOH HOH A . M 5 HOH 107 507 102 HOH HOH A . M 5 HOH 108 508 49 HOH HOH A . M 5 HOH 109 509 50 HOH HOH A . M 5 HOH 110 510 97 HOH HOH A . M 5 HOH 111 511 122 HOH HOH A . M 5 HOH 112 512 74 HOH HOH A . M 5 HOH 113 513 167 HOH HOH A . M 5 HOH 114 514 61 HOH HOH A . M 5 HOH 115 515 229 HOH HOH A . M 5 HOH 116 516 348 HOH HOH A . M 5 HOH 117 517 29 HOH HOH A . M 5 HOH 118 518 98 HOH HOH A . M 5 HOH 119 519 165 HOH HOH A . M 5 HOH 120 520 120 HOH HOH A . M 5 HOH 121 521 415 HOH HOH A . M 5 HOH 122 522 359 HOH HOH A . M 5 HOH 123 523 345 HOH HOH A . M 5 HOH 124 524 390 HOH HOH A . M 5 HOH 125 525 72 HOH HOH A . M 5 HOH 126 526 137 HOH HOH A . M 5 HOH 127 527 54 HOH HOH A . M 5 HOH 128 528 59 HOH HOH A . M 5 HOH 129 529 10 HOH HOH A . M 5 HOH 130 530 354 HOH HOH A . M 5 HOH 131 531 76 HOH HOH A . M 5 HOH 132 532 189 HOH HOH A . M 5 HOH 133 533 107 HOH HOH A . M 5 HOH 134 534 64 HOH HOH A . M 5 HOH 135 535 82 HOH HOH A . M 5 HOH 136 536 385 HOH HOH A . M 5 HOH 137 537 90 HOH HOH A . M 5 HOH 138 538 322 HOH HOH A . M 5 HOH 139 539 117 HOH HOH A . M 5 HOH 140 540 360 HOH HOH A . M 5 HOH 141 541 397 HOH HOH A . M 5 HOH 142 542 70 HOH HOH A . M 5 HOH 143 543 62 HOH HOH A . M 5 HOH 144 544 202 HOH HOH A . M 5 HOH 145 545 21 HOH HOH A . M 5 HOH 146 546 157 HOH HOH A . M 5 HOH 147 547 13 HOH HOH A . M 5 HOH 148 548 180 HOH HOH A . M 5 HOH 149 549 121 HOH HOH A . M 5 HOH 150 550 47 HOH HOH A . M 5 HOH 151 551 164 HOH HOH A . M 5 HOH 152 552 57 HOH HOH A . M 5 HOH 153 553 162 HOH HOH A . M 5 HOH 154 554 382 HOH HOH A . M 5 HOH 155 555 6 HOH HOH A . M 5 HOH 156 556 375 HOH HOH A . M 5 HOH 157 557 142 HOH HOH A . M 5 HOH 158 558 148 HOH HOH A . M 5 HOH 159 559 125 HOH HOH A . M 5 HOH 160 560 347 HOH HOH A . M 5 HOH 161 561 22 HOH HOH A . M 5 HOH 162 562 11 HOH HOH A . M 5 HOH 163 563 104 HOH HOH A . M 5 HOH 164 564 101 HOH HOH A . M 5 HOH 165 565 100 HOH HOH A . M 5 HOH 166 566 129 HOH HOH A . M 5 HOH 167 567 44 HOH HOH A . M 5 HOH 168 568 16 HOH HOH A . M 5 HOH 169 569 63 HOH HOH A . M 5 HOH 170 570 197 HOH HOH A . M 5 HOH 171 571 324 HOH HOH A . M 5 HOH 172 572 73 HOH HOH A . M 5 HOH 173 573 406 HOH HOH A . M 5 HOH 174 574 77 HOH HOH A . M 5 HOH 175 575 203 HOH HOH A . M 5 HOH 176 576 342 HOH HOH A . M 5 HOH 177 577 420 HOH HOH A . M 5 HOH 178 578 211 HOH HOH A . M 5 HOH 179 579 45 HOH HOH A . M 5 HOH 180 580 158 HOH HOH A . M 5 HOH 181 581 323 HOH HOH A . M 5 HOH 182 582 396 HOH HOH A . M 5 HOH 183 583 75 HOH HOH A . M 5 HOH 184 584 389 HOH HOH A . M 5 HOH 185 585 152 HOH HOH A . M 5 HOH 186 586 141 HOH HOH A . M 5 HOH 187 587 183 HOH HOH A . M 5 HOH 188 588 201 HOH HOH A . M 5 HOH 189 589 80 HOH HOH A . M 5 HOH 190 590 239 HOH HOH A . M 5 HOH 191 591 391 HOH HOH A . M 5 HOH 192 592 112 HOH HOH A . M 5 HOH 193 593 127 HOH HOH A . M 5 HOH 194 594 153 HOH HOH A . M 5 HOH 195 595 350 HOH HOH A . M 5 HOH 196 596 131 HOH HOH A . M 5 HOH 197 597 78 HOH HOH A . M 5 HOH 198 598 273 HOH HOH A . M 5 HOH 199 599 118 HOH HOH A . M 5 HOH 200 600 371 HOH HOH A . M 5 HOH 201 601 349 HOH HOH A . M 5 HOH 202 602 366 HOH HOH A . M 5 HOH 203 603 234 HOH HOH A . M 5 HOH 204 604 339 HOH HOH A . M 5 HOH 205 605 408 HOH HOH A . M 5 HOH 206 606 185 HOH HOH A . M 5 HOH 207 607 130 HOH HOH A . M 5 HOH 208 608 213 HOH HOH A . M 5 HOH 209 609 156 HOH HOH A . M 5 HOH 210 610 368 HOH HOH A . M 5 HOH 211 611 395 HOH HOH A . M 5 HOH 212 612 110 HOH HOH A . M 5 HOH 213 613 364 HOH HOH A . M 5 HOH 214 614 400 HOH HOH A . M 5 HOH 215 615 363 HOH HOH A . M 5 HOH 216 616 362 HOH HOH A . M 5 HOH 217 617 381 HOH HOH A . M 5 HOH 218 618 161 HOH HOH A . M 5 HOH 219 619 377 HOH HOH A . M 5 HOH 220 620 109 HOH HOH A . M 5 HOH 221 621 335 HOH HOH A . M 5 HOH 222 622 128 HOH HOH A . M 5 HOH 223 623 321 HOH HOH A . M 5 HOH 224 624 393 HOH HOH A . M 5 HOH 225 625 386 HOH HOH A . M 5 HOH 226 626 403 HOH HOH A . M 5 HOH 227 627 173 HOH HOH A . M 5 HOH 228 628 361 HOH HOH A . M 5 HOH 229 629 384 HOH HOH A . M 5 HOH 230 630 224 HOH HOH A . M 5 HOH 231 631 346 HOH HOH A . M 5 HOH 232 632 404 HOH HOH A . M 5 HOH 233 633 340 HOH HOH A . M 5 HOH 234 634 214 HOH HOH A . M 5 HOH 235 635 159 HOH HOH A . M 5 HOH 236 636 94 HOH HOH A . M 5 HOH 237 637 192 HOH HOH A . M 5 HOH 238 638 410 HOH HOH A . M 5 HOH 239 639 171 HOH HOH A . M 5 HOH 240 640 91 HOH HOH A . M 5 HOH 241 641 353 HOH HOH A . M 5 HOH 242 642 149 HOH HOH A . M 5 HOH 243 643 135 HOH HOH A . M 5 HOH 244 644 409 HOH HOH A . M 5 HOH 245 645 204 HOH HOH A . M 5 HOH 246 646 333 HOH HOH A . M 5 HOH 247 647 402 HOH HOH A . M 5 HOH 248 648 383 HOH HOH A . M 5 HOH 249 649 176 HOH HOH A . M 5 HOH 250 650 369 HOH HOH A . M 5 HOH 251 651 143 HOH HOH A . M 5 HOH 252 652 392 HOH HOH A . M 5 HOH 253 653 355 HOH HOH A . M 5 HOH 254 654 411 HOH HOH A . M 5 HOH 255 655 134 HOH HOH A . M 5 HOH 256 656 418 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2019-12-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.8.0230 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 Aimless 0.5.32 29/03/17 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 PDB_EXTRACT 3.23 'SEP. 23, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? program ? ? 'data reduction' ? ? ? 5 REFMAC . ? program ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A SER 116 ? B O2 A EDO 307 ? ? 1.47 2 1 O1 A EDO 307 ? ? O A HOH 401 ? ? 1.96 3 1 O A HOH 486 ? ? O A HOH 603 ? ? 2.07 4 1 OE2 A GLU 107 ? ? O A HOH 402 ? ? 2.10 5 1 CD A ARG 38 ? ? O A HOH 430 ? ? 2.14 6 1 O A HOH 402 ? ? O A HOH 411 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 CB A MET 158 ? ? 1_555 O A HOH 549 ? ? 1_455 1.64 2 1 O A HOH 412 ? ? 1_555 O A HOH 437 ? ? 1_554 2.15 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 11 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OE1 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 11 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.329 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation 0.077 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 30 ? ? CZ A ARG 30 ? ? NH2 A ARG 30 ? ? 116.71 120.30 -3.59 0.50 N 2 1 NE A ARG 38 ? ? CZ A ARG 38 ? ? NH2 A ARG 38 ? ? 116.12 120.30 -4.18 0.50 N 3 1 NE A ARG 77 ? ? CZ A ARG 77 ? ? NH2 A ARG 77 ? ? 116.01 120.30 -4.29 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 49 ? ? 92.07 -8.42 2 1 VAL A 168 ? ? -125.30 -57.17 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 20 ? ? 0.093 'SIDE CHAIN' 2 1 ARG A 29 ? ? 0.250 'SIDE CHAIN' 3 1 ARG A 38 ? ? 0.089 'SIDE CHAIN' 4 1 ARG A 151 ? ? 0.210 'SIDE CHAIN' # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 655 ? 7.15 . 2 1 O ? A HOH 656 ? 7.22 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 49 ? CB ? A ARG 44 CB 2 1 Y 1 A ARG 49 ? CG ? A ARG 44 CG 3 1 Y 1 A ARG 49 ? CD ? A ARG 44 CD 4 1 Y 1 A ARG 49 ? NE ? A ARG 44 NE 5 1 Y 1 A ARG 49 ? CZ ? A ARG 44 CZ 6 1 Y 1 A ARG 49 ? NH1 ? A ARG 44 NH1 7 1 Y 1 A ARG 49 ? NH2 ? A ARG 44 NH2 8 1 Y 1 A GLU 157 ? CG ? A GLU 152 CG 9 1 Y 1 A GLU 157 ? CD ? A GLU 152 CD 10 1 Y 1 A GLU 157 ? OE1 ? A GLU 152 OE1 11 1 Y 1 A GLU 157 ? OE2 ? A GLU 152 OE2 12 1 Y 1 A MET 158 ? CG ? A MET 153 CG 13 1 Y 1 A MET 158 ? SD ? A MET 153 SD 14 1 Y 1 A MET 158 ? CE ? A MET 153 CE 15 1 Y 1 A ASP 159 ? CG ? A ASP 154 CG 16 1 Y 1 A ASP 159 ? OD1 ? A ASP 154 OD1 17 1 Y 1 A ASP 159 ? OD2 ? A ASP 154 OD2 18 1 Y 1 A GLU 210 ? CG ? A GLU 205 CG 19 1 Y 1 A GLU 210 ? CD ? A GLU 205 CD 20 1 Y 1 A GLU 210 ? OE1 ? A GLU 205 OE1 21 1 Y 1 A GLU 210 ? OE2 ? A GLU 205 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 155 ? A ASP 150 2 1 Y 1 A GLU 156 ? A GLU 151 # _pdbx_deposit_group.group_id G_1002053 _pdbx_deposit_group.group_description ;human OUTB2 screened against covalent fragments by X-ray Crystallography at the XChem facility of Diamond Light Source beamline I04-1 ; _pdbx_deposit_group.group_title 'Covalent fragment group deposition' _pdbx_deposit_group.group_type 'changed state' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-(3-phenylprop-2-yn-1-yl)acetamide' J5V 3 1,2-ETHANEDIOL EDO 4 'UNKNOWN LIGAND' UNL 5 water HOH #