data_5QIZ # _entry.id 5QIZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5QIZ WWPDB D_1001402008 # _pdbx_database_status.entry_id 5QIZ _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2018-08-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sethi, R.' 1 ? 'Douangamath, A.' 2 ? 'Resnick, E.' 3 ? 'Bradley, A.R.' 4 ? 'Collins, P.' 5 ? 'Brandao-Neto, J.' 6 ? 'Talon, R.' 7 ? 'Krojer, T.' 8 ? 'Bountra, C.' 9 ? 'Arrowsmith, C.H.' 10 ? 'Edwards, A.' 11 ? 'London, N.' 12 ? 'von Delft, F.' 13 ? # _citation.id primary _citation.title 'Covalent fragment group deposition' _citation.journal_abbrev 'To Be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Sethi, R.' ? 1 primary 'Douangamath, A.' ? 2 primary 'Resnick, E.' ? 3 primary 'Bradley, A.R.' ? 4 primary 'Collins, P.' ? 5 primary 'Brandao-Neto, J.' ? 6 primary 'Talon, R.' ? 7 primary 'Krojer, T.' ? 8 primary 'Bountra, C.' ? 9 primary 'Arrowsmith, C.H.' ? 10 primary 'Edwards, A.' ? 11 primary 'London, N.' ? 12 primary 'von Delft, F.' ? 13 # _cell.entry_id 5QIZ _cell.length_a 47.210 _cell.length_b 58.410 _cell.length_c 49.580 _cell.angle_alpha 90.000 _cell.angle_beta 115.850 _cell.angle_gamma 90.000 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QIZ _symmetry.Int_Tables_number 4 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin thioesterase OTUB2' 26362.008 1 3.4.19.12 ? ? ? 2 non-polymer syn 'N-[(5-chlorothiophen-2-yl)methyl]acetamide' 189.663 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 4 water nat water 18.015 206 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Deubiquitinating enzyme OTUB2,OTU domain-containing ubiquitin aldehyde-binding protein 2,Otubain-2,Ubiquitin-specific-processing protease OTUB2 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;FNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDL LAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCT HEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYA ; _entity_poly.pdbx_seq_one_letter_code_can ;FNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDL LAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCT HEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 ASN n 1 3 LEU n 1 4 ILE n 1 5 SER n 1 6 GLU n 1 7 LYS n 1 8 CYS n 1 9 ASP n 1 10 ILE n 1 11 LEU n 1 12 SER n 1 13 ILE n 1 14 LEU n 1 15 ARG n 1 16 ASP n 1 17 HIS n 1 18 PRO n 1 19 GLU n 1 20 ASN n 1 21 ARG n 1 22 ILE n 1 23 TYR n 1 24 ARG n 1 25 ARG n 1 26 LYS n 1 27 ILE n 1 28 GLU n 1 29 GLU n 1 30 LEU n 1 31 SER n 1 32 LYS n 1 33 ARG n 1 34 PHE n 1 35 THR n 1 36 ALA n 1 37 ILE n 1 38 ARG n 1 39 LYS n 1 40 THR n 1 41 LYS n 1 42 GLY n 1 43 ASP n 1 44 ARG n 1 45 ASN n 1 46 CYS n 1 47 PHE n 1 48 TYR n 1 49 ARG n 1 50 ALA n 1 51 LEU n 1 52 GLY n 1 53 TYR n 1 54 SER n 1 55 TYR n 1 56 LEU n 1 57 GLU n 1 58 SER n 1 59 LEU n 1 60 LEU n 1 61 GLY n 1 62 LYS n 1 63 SER n 1 64 ARG n 1 65 GLU n 1 66 ILE n 1 67 PHE n 1 68 LYS n 1 69 PHE n 1 70 LYS n 1 71 GLU n 1 72 ARG n 1 73 VAL n 1 74 LEU n 1 75 GLN n 1 76 THR n 1 77 PRO n 1 78 ASN n 1 79 ASP n 1 80 LEU n 1 81 LEU n 1 82 ALA n 1 83 ALA n 1 84 GLY n 1 85 PHE n 1 86 GLU n 1 87 GLU n 1 88 HIS n 1 89 LYS n 1 90 PHE n 1 91 ARG n 1 92 ASN n 1 93 PHE n 1 94 PHE n 1 95 ASN n 1 96 ALA n 1 97 PHE n 1 98 TYR n 1 99 SER n 1 100 VAL n 1 101 VAL n 1 102 GLU n 1 103 LEU n 1 104 VAL n 1 105 GLU n 1 106 LYS n 1 107 ASP n 1 108 GLY n 1 109 SER n 1 110 VAL n 1 111 SER n 1 112 SER n 1 113 LEU n 1 114 LEU n 1 115 LYS n 1 116 VAL n 1 117 PHE n 1 118 ASN n 1 119 ASP n 1 120 GLN n 1 121 SER n 1 122 ALA n 1 123 SER n 1 124 ASP n 1 125 HIS n 1 126 ILE n 1 127 VAL n 1 128 GLN n 1 129 PHE n 1 130 LEU n 1 131 ARG n 1 132 LEU n 1 133 LEU n 1 134 THR n 1 135 SER n 1 136 ALA n 1 137 PHE n 1 138 ILE n 1 139 ARG n 1 140 ASN n 1 141 ARG n 1 142 ALA n 1 143 ASP n 1 144 PHE n 1 145 PHE n 1 146 ARG n 1 147 HIS n 1 148 PHE n 1 149 ILE n 1 150 ASP n 1 151 GLU n 1 152 GLU n 1 153 MET n 1 154 ASP n 1 155 ILE n 1 156 LYS n 1 157 ASP n 1 158 PHE n 1 159 CYS n 1 160 THR n 1 161 HIS n 1 162 GLU n 1 163 VAL n 1 164 GLU n 1 165 PRO n 1 166 MET n 1 167 ALA n 1 168 THR n 1 169 GLU n 1 170 CYS n 1 171 ASP n 1 172 HIS n 1 173 ILE n 1 174 GLN n 1 175 ILE n 1 176 THR n 1 177 ALA n 1 178 LEU n 1 179 SER n 1 180 GLN n 1 181 ALA n 1 182 LEU n 1 183 SER n 1 184 ILE n 1 185 ALA n 1 186 LEU n 1 187 GLN n 1 188 VAL n 1 189 GLU n 1 190 TYR n 1 191 VAL n 1 192 ASP n 1 193 GLU n 1 194 MET n 1 195 ASP n 1 196 THR n 1 197 ALA n 1 198 LEU n 1 199 ASN n 1 200 HIS n 1 201 HIS n 1 202 VAL n 1 203 PHE n 1 204 PRO n 1 205 GLU n 1 206 ALA n 1 207 ALA n 1 208 THR n 1 209 PRO n 1 210 SER n 1 211 VAL n 1 212 TYR n 1 213 LEU n 1 214 LEU n 1 215 TYR n 1 216 LYS n 1 217 THR n 1 218 SER n 1 219 HIS n 1 220 TYR n 1 221 ASN n 1 222 ILE n 1 223 LEU n 1 224 TYR n 1 225 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 225 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'OTUB2, C14orf137, OTB2, OTU2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OTUB2_HUMAN _struct_ref.pdbx_db_accession Q96DC9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;FNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDL LAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCT HEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYA ; _struct_ref.pdbx_align_begin 6 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5QIZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 225 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q96DC9 _struct_ref_seq.db_align_beg 6 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 230 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 230 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5QIZ _struct_ref_seq_dif.mon_id ARG _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 44 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q96DC9 _struct_ref_seq_dif.db_mon_id GLY _struct_ref_seq_dif.pdbx_seq_db_seq_num 49 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 49 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 J64 non-polymer . 'N-[(5-chlorothiophen-2-yl)methyl]acetamide' ? 'C7 H8 Cl N O S' 189.663 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 5QIZ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.000 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 47.29 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '16% PEG4K, 0.1M HEPES pH 7.0, 8% 2-propanol, 5 mM DTT' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? # _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2017-06-28 _diffrn_detector.diffrn_id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92819 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_wavelength_list 0.92819 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5QIZ _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 44.620 _reflns.d_resolution_high 1.630 _reflns.number_obs 30252 _reflns.number_all ? _reflns.percent_possible_obs 99.600 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.500 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.300 _reflns.pdbx_Rrim_I_all 0.112 _reflns.pdbx_Rpim_I_all 0.060 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 101194 _reflns.pdbx_scaling_rejects 0 _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.630 1.670 ? 7464 ? ? 0.948 ? ? ? 3.400 ? 1.200 ? 2225 ? ? ? ? 99.800 1.126 0.603 0.525 1 2 7.290 44.620 ? 1271 ? ? 0.026 ? ? ? 3.500 ? 35.600 ? 365 ? ? ? ? 99.400 0.031 0.016 0.999 # _refine.entry_id 5QIZ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.6300 _refine.ls_d_res_low 44.6200 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.5600 _refine.ls_number_reflns_obs 28903 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1793 _refine.ls_R_factor_R_work 0.1781 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2056 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.4000 _refine.ls_number_reflns_R_free 1331 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 19.8500 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0100 _refine.aniso_B[2][2] -0.0100 _refine.aniso_B[3][3] 0.0200 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0100 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9650 _refine.correlation_coeff_Fo_to_Fc_free 0.9570 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0940 _refine.pdbx_overall_ESU_R_Free 0.0920 _refine.overall_SU_ML 0.0740 _refine.overall_SU_B 2.3060 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1TFF _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 178.180 _refine.B_iso_min 9.720 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.6300 _refine_hist.d_res_low 44.6200 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 206 _refine_hist.number_atoms_total 2072 _refine_hist.pdbx_number_residues_total 225 _refine_hist.pdbx_B_iso_mean_ligand 26.14 _refine_hist.pdbx_B_iso_mean_solvent 31.51 _refine_hist.pdbx_number_atoms_protein 1847 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1927 0.016 0.014 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1701 0.001 0.017 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2600 1.633 1.652 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3979 1.031 1.634 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 229 6.502 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 114 30.371 21.667 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 336 12.488 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14 23.351 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 247 0.087 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2175 0.008 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 389 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 913 1.540 1.782 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 912 1.507 1.779 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1143 2.286 2.663 ? ? # _refine_ls_shell.d_res_high 1.6300 _refine_ls_shell.d_res_low 1.6720 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.7800 _refine_ls_shell.number_reflns_R_work 2118 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2840 _refine_ls_shell.R_factor_R_free 0.2950 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2218 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # _struct.entry_id 5QIZ _struct.title 'Covalent fragment group deposition -- Crystal Structure of OUTB2 in complex with PCM-0103080' _struct.pdbx_descriptor 'Ubiquitin thioesterase OTUB2 (E.C.3.4.19.12)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5QIZ _struct_keywords.text ;SGC - Diamond I04-1 fragment screening, XChemExplorer, PROTEASE OTUB2, DEUBIQUITINATING ENZYME OTUB2, hydrolase-hydrolase inhibitor complex ; _struct_keywords.pdbx_keywords 'hydrolase/hydrolase inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 11 ? HIS A 17 ? LEU A 16 HIS A 22 5 ? 7 HELX_P HELX_P2 AA2 ASN A 20 ? LYS A 32 ? ASN A 25 LYS A 37 1 ? 13 HELX_P HELX_P3 AA3 ASN A 45 ? LEU A 60 ? ASN A 50 LEU A 65 1 ? 16 HELX_P HELX_P4 AA4 LYS A 62 ? ALA A 83 ? LYS A 67 ALA A 88 1 ? 22 HELX_P HELX_P5 AA5 GLU A 86 ? ASP A 107 ? GLU A 91 ASP A 112 1 ? 22 HELX_P HELX_P6 AA6 SER A 109 ? ASP A 119 ? SER A 114 ASP A 124 1 ? 11 HELX_P HELX_P7 AA7 ASP A 119 ? ARG A 141 ? ASP A 124 ARG A 146 1 ? 23 HELX_P HELX_P8 AA8 ARG A 141 ? ILE A 149 ? ARG A 146 ILE A 154 1 ? 9 HELX_P HELX_P9 AA9 ASP A 154 ? VAL A 163 ? ASP A 159 VAL A 168 1 ? 10 HELX_P HELX_P10 AB1 ASP A 171 ? SER A 183 ? ASP A 176 SER A 188 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 46 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id J64 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C1 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 51 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id J64 _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.842 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 203 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 208 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 204 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 209 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -15.81 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 CYS A 8 ? ASP A 9 ? CYS A 13 ASP A 14 AA1 2 ALA A 36 ? ARG A 38 ? ALA A 41 ARG A 43 AA1 3 HIS A 219 ? TYR A 224 ? HIS A 224 TYR A 229 AA1 4 VAL A 211 ? LYS A 216 ? VAL A 216 LYS A 221 AA1 5 LEU A 186 ? TYR A 190 ? LEU A 191 TYR A 195 AA1 6 ASN A 199 ? PHE A 203 ? ASN A 204 PHE A 208 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N CYS A 8 ? N CYS A 13 O ILE A 37 ? O ILE A 42 AA1 2 3 N ARG A 38 ? N ARG A 43 O ILE A 222 ? O ILE A 227 AA1 3 4 O ASN A 221 ? O ASN A 226 N LEU A 214 ? N LEU A 219 AA1 4 5 O LEU A 213 ? O LEU A 218 N GLU A 189 ? N GLU A 194 AA1 5 6 N TYR A 190 ? N TYR A 195 O ASN A 199 ? O ASN A 204 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id J64 _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'binding site for residue J64 A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 GLY A 42 ? GLY A 47 . ? 1_555 ? 2 AC1 10 ASP A 43 ? ASP A 48 . ? 1_555 ? 3 AC1 10 ARG A 44 ? ARG A 49 . ? 1_555 ? 4 AC1 10 ASN A 45 ? ASN A 50 . ? 1_555 ? 5 AC1 10 CYS A 46 ? CYS A 51 . ? 1_555 ? 6 AC1 10 PHE A 47 ? PHE A 52 . ? 1_555 ? 7 AC1 10 GLU A 169 ? GLU A 174 . ? 1_555 ? 8 AC1 10 THR A 217 ? THR A 222 . ? 1_555 ? 9 AC1 10 SER A 218 ? SER A 223 . ? 1_555 ? 10 AC1 10 HIS A 219 ? HIS A 224 . ? 1_555 ? # _atom_sites.entry_id 5QIZ _atom_sites.fract_transf_matrix[1][1] 0.021182 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010263 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017120 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022412 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 0 0 PHE PHE A . n A 1 2 ASN 2 7 7 ASN ASN A . n A 1 3 LEU 3 8 8 LEU LEU A . n A 1 4 ILE 4 9 9 ILE ILE A . n A 1 5 SER 5 10 10 SER SER A . n A 1 6 GLU 6 11 11 GLU GLU A . n A 1 7 LYS 7 12 12 LYS LYS A . n A 1 8 CYS 8 13 13 CYS CYS A . n A 1 9 ASP 9 14 14 ASP ASP A . n A 1 10 ILE 10 15 15 ILE ILE A . n A 1 11 LEU 11 16 16 LEU LEU A . n A 1 12 SER 12 17 17 SER SER A . n A 1 13 ILE 13 18 18 ILE ILE A . n A 1 14 LEU 14 19 19 LEU LEU A . n A 1 15 ARG 15 20 20 ARG ARG A . n A 1 16 ASP 16 21 21 ASP ASP A . n A 1 17 HIS 17 22 22 HIS HIS A . n A 1 18 PRO 18 23 23 PRO PRO A . n A 1 19 GLU 19 24 24 GLU GLU A . n A 1 20 ASN 20 25 25 ASN ASN A . n A 1 21 ARG 21 26 26 ARG ARG A . n A 1 22 ILE 22 27 27 ILE ILE A . n A 1 23 TYR 23 28 28 TYR TYR A . n A 1 24 ARG 24 29 29 ARG ARG A . n A 1 25 ARG 25 30 30 ARG ARG A . n A 1 26 LYS 26 31 31 LYS LYS A . n A 1 27 ILE 27 32 32 ILE ILE A . n A 1 28 GLU 28 33 33 GLU GLU A . n A 1 29 GLU 29 34 34 GLU GLU A . n A 1 30 LEU 30 35 35 LEU LEU A . n A 1 31 SER 31 36 36 SER SER A . n A 1 32 LYS 32 37 37 LYS LYS A . n A 1 33 ARG 33 38 38 ARG ARG A . n A 1 34 PHE 34 39 39 PHE PHE A . n A 1 35 THR 35 40 40 THR THR A . n A 1 36 ALA 36 41 41 ALA ALA A . n A 1 37 ILE 37 42 42 ILE ILE A . n A 1 38 ARG 38 43 43 ARG ARG A . n A 1 39 LYS 39 44 44 LYS LYS A . n A 1 40 THR 40 45 45 THR THR A . n A 1 41 LYS 41 46 46 LYS LYS A . n A 1 42 GLY 42 47 47 GLY GLY A . n A 1 43 ASP 43 48 48 ASP ASP A . n A 1 44 ARG 44 49 49 ARG GLY A . n A 1 45 ASN 45 50 50 ASN ASN A . n A 1 46 CYS 46 51 51 CYS CYS A . n A 1 47 PHE 47 52 52 PHE PHE A . n A 1 48 TYR 48 53 53 TYR TYR A . n A 1 49 ARG 49 54 54 ARG ARG A . n A 1 50 ALA 50 55 55 ALA ALA A . n A 1 51 LEU 51 56 56 LEU LEU A . n A 1 52 GLY 52 57 57 GLY GLY A . n A 1 53 TYR 53 58 58 TYR TYR A . n A 1 54 SER 54 59 59 SER SER A . n A 1 55 TYR 55 60 60 TYR TYR A . n A 1 56 LEU 56 61 61 LEU LEU A . n A 1 57 GLU 57 62 62 GLU GLU A . n A 1 58 SER 58 63 63 SER SER A . n A 1 59 LEU 59 64 64 LEU LEU A . n A 1 60 LEU 60 65 65 LEU LEU A . n A 1 61 GLY 61 66 66 GLY GLY A . n A 1 62 LYS 62 67 67 LYS LYS A . n A 1 63 SER 63 68 68 SER SER A . n A 1 64 ARG 64 69 69 ARG ARG A . n A 1 65 GLU 65 70 70 GLU GLU A . n A 1 66 ILE 66 71 71 ILE ILE A . n A 1 67 PHE 67 72 72 PHE PHE A . n A 1 68 LYS 68 73 73 LYS LYS A . n A 1 69 PHE 69 74 74 PHE PHE A . n A 1 70 LYS 70 75 75 LYS LYS A . n A 1 71 GLU 71 76 76 GLU GLU A . n A 1 72 ARG 72 77 77 ARG ARG A . n A 1 73 VAL 73 78 78 VAL VAL A . n A 1 74 LEU 74 79 79 LEU LEU A . n A 1 75 GLN 75 80 80 GLN GLN A . n A 1 76 THR 76 81 81 THR THR A . n A 1 77 PRO 77 82 82 PRO PRO A . n A 1 78 ASN 78 83 83 ASN ASN A . n A 1 79 ASP 79 84 84 ASP ASP A . n A 1 80 LEU 80 85 85 LEU LEU A . n A 1 81 LEU 81 86 86 LEU LEU A . n A 1 82 ALA 82 87 87 ALA ALA A . n A 1 83 ALA 83 88 88 ALA ALA A . n A 1 84 GLY 84 89 89 GLY GLY A . n A 1 85 PHE 85 90 90 PHE PHE A . n A 1 86 GLU 86 91 91 GLU GLU A . n A 1 87 GLU 87 92 92 GLU GLU A . n A 1 88 HIS 88 93 93 HIS HIS A . n A 1 89 LYS 89 94 94 LYS LYS A . n A 1 90 PHE 90 95 95 PHE PHE A . n A 1 91 ARG 91 96 96 ARG ARG A . n A 1 92 ASN 92 97 97 ASN ASN A . n A 1 93 PHE 93 98 98 PHE PHE A . n A 1 94 PHE 94 99 99 PHE PHE A . n A 1 95 ASN 95 100 100 ASN ASN A . n A 1 96 ALA 96 101 101 ALA ALA A . n A 1 97 PHE 97 102 102 PHE PHE A . n A 1 98 TYR 98 103 103 TYR TYR A . n A 1 99 SER 99 104 104 SER SER A . n A 1 100 VAL 100 105 105 VAL VAL A . n A 1 101 VAL 101 106 106 VAL VAL A . n A 1 102 GLU 102 107 107 GLU GLU A . n A 1 103 LEU 103 108 108 LEU LEU A . n A 1 104 VAL 104 109 109 VAL VAL A . n A 1 105 GLU 105 110 110 GLU GLU A . n A 1 106 LYS 106 111 111 LYS LYS A . n A 1 107 ASP 107 112 112 ASP ASP A . n A 1 108 GLY 108 113 113 GLY GLY A . n A 1 109 SER 109 114 114 SER SER A . n A 1 110 VAL 110 115 115 VAL VAL A . n A 1 111 SER 111 116 116 SER SER A . n A 1 112 SER 112 117 117 SER SER A . n A 1 113 LEU 113 118 118 LEU LEU A . n A 1 114 LEU 114 119 119 LEU LEU A . n A 1 115 LYS 115 120 120 LYS LYS A . n A 1 116 VAL 116 121 121 VAL VAL A . n A 1 117 PHE 117 122 122 PHE PHE A . n A 1 118 ASN 118 123 123 ASN ASN A . n A 1 119 ASP 119 124 124 ASP ASP A . n A 1 120 GLN 120 125 125 GLN GLN A . n A 1 121 SER 121 126 126 SER SER A . n A 1 122 ALA 122 127 127 ALA ALA A . n A 1 123 SER 123 128 128 SER SER A . n A 1 124 ASP 124 129 129 ASP ASP A . n A 1 125 HIS 125 130 130 HIS HIS A . n A 1 126 ILE 126 131 131 ILE ILE A . n A 1 127 VAL 127 132 132 VAL VAL A . n A 1 128 GLN 128 133 133 GLN GLN A . n A 1 129 PHE 129 134 134 PHE PHE A . n A 1 130 LEU 130 135 135 LEU LEU A . n A 1 131 ARG 131 136 136 ARG ARG A . n A 1 132 LEU 132 137 137 LEU LEU A . n A 1 133 LEU 133 138 138 LEU LEU A . n A 1 134 THR 134 139 139 THR THR A . n A 1 135 SER 135 140 140 SER SER A . n A 1 136 ALA 136 141 141 ALA ALA A . n A 1 137 PHE 137 142 142 PHE PHE A . n A 1 138 ILE 138 143 143 ILE ILE A . n A 1 139 ARG 139 144 144 ARG ARG A . n A 1 140 ASN 140 145 145 ASN ASN A . n A 1 141 ARG 141 146 146 ARG ARG A . n A 1 142 ALA 142 147 147 ALA ALA A . n A 1 143 ASP 143 148 148 ASP ASP A . n A 1 144 PHE 144 149 149 PHE PHE A . n A 1 145 PHE 145 150 150 PHE PHE A . n A 1 146 ARG 146 151 151 ARG ARG A . n A 1 147 HIS 147 152 152 HIS HIS A . n A 1 148 PHE 148 153 153 PHE PHE A . n A 1 149 ILE 149 154 154 ILE ILE A . n A 1 150 ASP 150 155 155 ASP ASP A . n A 1 151 GLU 151 156 156 GLU GLU A . n A 1 152 GLU 152 157 157 GLU GLU A . n A 1 153 MET 153 158 158 MET MET A . n A 1 154 ASP 154 159 159 ASP ASP A . n A 1 155 ILE 155 160 160 ILE ILE A . n A 1 156 LYS 156 161 161 LYS LYS A . n A 1 157 ASP 157 162 162 ASP ASP A . n A 1 158 PHE 158 163 163 PHE PHE A . n A 1 159 CYS 159 164 164 CYS CYS A . n A 1 160 THR 160 165 165 THR THR A . n A 1 161 HIS 161 166 166 HIS HIS A . n A 1 162 GLU 162 167 167 GLU GLU A . n A 1 163 VAL 163 168 168 VAL VAL A . n A 1 164 GLU 164 169 169 GLU GLU A . n A 1 165 PRO 165 170 170 PRO PRO A . n A 1 166 MET 166 171 171 MET MET A . n A 1 167 ALA 167 172 172 ALA ALA A . n A 1 168 THR 168 173 173 THR THR A . n A 1 169 GLU 169 174 174 GLU GLU A . n A 1 170 CYS 170 175 175 CYS CYS A . n A 1 171 ASP 171 176 176 ASP ASP A . n A 1 172 HIS 172 177 177 HIS HIS A . n A 1 173 ILE 173 178 178 ILE ILE A . n A 1 174 GLN 174 179 179 GLN GLN A . n A 1 175 ILE 175 180 180 ILE ILE A . n A 1 176 THR 176 181 181 THR THR A . n A 1 177 ALA 177 182 182 ALA ALA A . n A 1 178 LEU 178 183 183 LEU LEU A . n A 1 179 SER 179 184 184 SER SER A . n A 1 180 GLN 180 185 185 GLN GLN A . n A 1 181 ALA 181 186 186 ALA ALA A . n A 1 182 LEU 182 187 187 LEU LEU A . n A 1 183 SER 183 188 188 SER SER A . n A 1 184 ILE 184 189 189 ILE ILE A . n A 1 185 ALA 185 190 190 ALA ALA A . n A 1 186 LEU 186 191 191 LEU LEU A . n A 1 187 GLN 187 192 192 GLN GLN A . n A 1 188 VAL 188 193 193 VAL VAL A . n A 1 189 GLU 189 194 194 GLU GLU A . n A 1 190 TYR 190 195 195 TYR TYR A . n A 1 191 VAL 191 196 196 VAL VAL A . n A 1 192 ASP 192 197 197 ASP ASP A . n A 1 193 GLU 193 198 198 GLU GLU A . n A 1 194 MET 194 199 199 MET MET A . n A 1 195 ASP 195 200 200 ASP ASP A . n A 1 196 THR 196 201 201 THR THR A . n A 1 197 ALA 197 202 202 ALA ALA A . n A 1 198 LEU 198 203 203 LEU LEU A . n A 1 199 ASN 199 204 204 ASN ASN A . n A 1 200 HIS 200 205 205 HIS HIS A . n A 1 201 HIS 201 206 206 HIS HIS A . n A 1 202 VAL 202 207 207 VAL VAL A . n A 1 203 PHE 203 208 208 PHE PHE A . n A 1 204 PRO 204 209 209 PRO PRO A . n A 1 205 GLU 205 210 210 GLU ALA A . n A 1 206 ALA 206 211 211 ALA ALA A . n A 1 207 ALA 207 212 212 ALA ALA A . n A 1 208 THR 208 213 213 THR THR A . n A 1 209 PRO 209 214 214 PRO PRO A . n A 1 210 SER 210 215 215 SER SER A . n A 1 211 VAL 211 216 216 VAL VAL A . n A 1 212 TYR 212 217 217 TYR TYR A . n A 1 213 LEU 213 218 218 LEU LEU A . n A 1 214 LEU 214 219 219 LEU LEU A . n A 1 215 TYR 215 220 220 TYR TYR A . n A 1 216 LYS 216 221 221 LYS LYS A . n A 1 217 THR 217 222 222 THR THR A . n A 1 218 SER 218 223 223 SER SER A . n A 1 219 HIS 219 224 224 HIS HIS A . n A 1 220 TYR 220 225 225 TYR TYR A . n A 1 221 ASN 221 226 226 ASN ASN A . n A 1 222 ILE 222 227 227 ILE ILE A . n A 1 223 LEU 223 228 228 LEU LEU A . n A 1 224 TYR 224 229 229 TYR TYR A . n A 1 225 ALA 225 230 230 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J64 1 301 301 J64 LIG A . C 3 UNL 1 302 401 UNL UNL A . D 4 HOH 1 401 372 HOH HOH A . D 4 HOH 2 402 137 HOH HOH A . D 4 HOH 3 403 38 HOH HOH A . D 4 HOH 4 404 14 HOH HOH A . D 4 HOH 5 405 376 HOH HOH A . D 4 HOH 6 406 117 HOH HOH A . D 4 HOH 7 407 40 HOH HOH A . D 4 HOH 8 408 336 HOH HOH A . D 4 HOH 9 409 17 HOH HOH A . D 4 HOH 10 410 273 HOH HOH A . D 4 HOH 11 411 356 HOH HOH A . D 4 HOH 12 412 157 HOH HOH A . D 4 HOH 13 413 365 HOH HOH A . D 4 HOH 14 414 77 HOH HOH A . D 4 HOH 15 415 145 HOH HOH A . D 4 HOH 16 416 358 HOH HOH A . D 4 HOH 17 417 154 HOH HOH A . D 4 HOH 18 418 83 HOH HOH A . D 4 HOH 19 419 189 HOH HOH A . D 4 HOH 20 420 85 HOH HOH A . D 4 HOH 21 421 168 HOH HOH A . D 4 HOH 22 422 262 HOH HOH A . D 4 HOH 23 423 37 HOH HOH A . D 4 HOH 24 424 107 HOH HOH A . D 4 HOH 25 425 18 HOH HOH A . D 4 HOH 26 426 344 HOH HOH A . D 4 HOH 27 427 53 HOH HOH A . D 4 HOH 28 428 202 HOH HOH A . D 4 HOH 29 429 33 HOH HOH A . D 4 HOH 30 430 36 HOH HOH A . D 4 HOH 31 431 71 HOH HOH A . D 4 HOH 32 432 22 HOH HOH A . D 4 HOH 33 433 78 HOH HOH A . D 4 HOH 34 434 170 HOH HOH A . D 4 HOH 35 435 211 HOH HOH A . D 4 HOH 36 436 72 HOH HOH A . D 4 HOH 37 437 150 HOH HOH A . D 4 HOH 38 438 42 HOH HOH A . D 4 HOH 39 439 129 HOH HOH A . D 4 HOH 40 440 346 HOH HOH A . D 4 HOH 41 441 128 HOH HOH A . D 4 HOH 42 442 179 HOH HOH A . D 4 HOH 43 443 43 HOH HOH A . D 4 HOH 44 444 31 HOH HOH A . D 4 HOH 45 445 190 HOH HOH A . D 4 HOH 46 446 120 HOH HOH A . D 4 HOH 47 447 67 HOH HOH A . D 4 HOH 48 448 52 HOH HOH A . D 4 HOH 49 449 165 HOH HOH A . D 4 HOH 50 450 7 HOH HOH A . D 4 HOH 51 451 119 HOH HOH A . D 4 HOH 52 452 101 HOH HOH A . D 4 HOH 53 453 16 HOH HOH A . D 4 HOH 54 454 69 HOH HOH A . D 4 HOH 55 455 108 HOH HOH A . D 4 HOH 56 456 343 HOH HOH A . D 4 HOH 57 457 46 HOH HOH A . D 4 HOH 58 458 60 HOH HOH A . D 4 HOH 59 459 2 HOH HOH A . D 4 HOH 60 460 64 HOH HOH A . D 4 HOH 61 461 353 HOH HOH A . D 4 HOH 62 462 11 HOH HOH A . D 4 HOH 63 463 21 HOH HOH A . D 4 HOH 64 464 24 HOH HOH A . D 4 HOH 65 465 1 HOH HOH A . D 4 HOH 66 466 12 HOH HOH A . D 4 HOH 67 467 105 HOH HOH A . D 4 HOH 68 468 96 HOH HOH A . D 4 HOH 69 469 118 HOH HOH A . D 4 HOH 70 470 338 HOH HOH A . D 4 HOH 71 471 148 HOH HOH A . D 4 HOH 72 472 361 HOH HOH A . D 4 HOH 73 473 30 HOH HOH A . D 4 HOH 74 474 15 HOH HOH A . D 4 HOH 75 475 364 HOH HOH A . D 4 HOH 76 476 26 HOH HOH A . D 4 HOH 77 477 27 HOH HOH A . D 4 HOH 78 478 58 HOH HOH A . D 4 HOH 79 479 178 HOH HOH A . D 4 HOH 80 480 23 HOH HOH A . D 4 HOH 81 481 162 HOH HOH A . D 4 HOH 82 482 41 HOH HOH A . D 4 HOH 83 483 74 HOH HOH A . D 4 HOH 84 484 342 HOH HOH A . D 4 HOH 85 485 84 HOH HOH A . D 4 HOH 86 486 152 HOH HOH A . D 4 HOH 87 487 35 HOH HOH A . D 4 HOH 88 488 87 HOH HOH A . D 4 HOH 89 489 247 HOH HOH A . D 4 HOH 90 490 68 HOH HOH A . D 4 HOH 91 491 341 HOH HOH A . D 4 HOH 92 492 348 HOH HOH A . D 4 HOH 93 493 13 HOH HOH A . D 4 HOH 94 494 93 HOH HOH A . D 4 HOH 95 495 102 HOH HOH A . D 4 HOH 96 496 335 HOH HOH A . D 4 HOH 97 497 124 HOH HOH A . D 4 HOH 98 498 32 HOH HOH A . D 4 HOH 99 499 163 HOH HOH A . D 4 HOH 100 500 155 HOH HOH A . D 4 HOH 101 501 29 HOH HOH A . D 4 HOH 102 502 80 HOH HOH A . D 4 HOH 103 503 56 HOH HOH A . D 4 HOH 104 504 362 HOH HOH A . D 4 HOH 105 505 121 HOH HOH A . D 4 HOH 106 506 166 HOH HOH A . D 4 HOH 107 507 218 HOH HOH A . D 4 HOH 108 508 20 HOH HOH A . D 4 HOH 109 509 354 HOH HOH A . D 4 HOH 110 510 54 HOH HOH A . D 4 HOH 111 511 378 HOH HOH A . D 4 HOH 112 512 19 HOH HOH A . D 4 HOH 113 513 79 HOH HOH A . D 4 HOH 114 514 103 HOH HOH A . D 4 HOH 115 515 61 HOH HOH A . D 4 HOH 116 516 106 HOH HOH A . D 4 HOH 117 517 50 HOH HOH A . D 4 HOH 118 518 8 HOH HOH A . D 4 HOH 119 519 104 HOH HOH A . D 4 HOH 120 520 89 HOH HOH A . D 4 HOH 121 521 357 HOH HOH A . D 4 HOH 122 522 98 HOH HOH A . D 4 HOH 123 523 125 HOH HOH A . D 4 HOH 124 524 116 HOH HOH A . D 4 HOH 125 525 47 HOH HOH A . D 4 HOH 126 526 114 HOH HOH A . D 4 HOH 127 527 39 HOH HOH A . D 4 HOH 128 528 57 HOH HOH A . D 4 HOH 129 529 143 HOH HOH A . D 4 HOH 130 530 142 HOH HOH A . D 4 HOH 131 531 97 HOH HOH A . D 4 HOH 132 532 167 HOH HOH A . D 4 HOH 133 533 10 HOH HOH A . D 4 HOH 134 534 59 HOH HOH A . D 4 HOH 135 535 82 HOH HOH A . D 4 HOH 136 536 180 HOH HOH A . D 4 HOH 137 537 375 HOH HOH A . D 4 HOH 138 538 48 HOH HOH A . D 4 HOH 139 539 371 HOH HOH A . D 4 HOH 140 540 111 HOH HOH A . D 4 HOH 141 541 360 HOH HOH A . D 4 HOH 142 542 44 HOH HOH A . D 4 HOH 143 543 352 HOH HOH A . D 4 HOH 144 544 63 HOH HOH A . D 4 HOH 145 545 66 HOH HOH A . D 4 HOH 146 546 49 HOH HOH A . D 4 HOH 147 547 76 HOH HOH A . D 4 HOH 148 548 6 HOH HOH A . D 4 HOH 149 549 347 HOH HOH A . D 4 HOH 150 550 90 HOH HOH A . D 4 HOH 151 551 55 HOH HOH A . D 4 HOH 152 552 62 HOH HOH A . D 4 HOH 153 553 203 HOH HOH A . D 4 HOH 154 554 381 HOH HOH A . D 4 HOH 155 555 160 HOH HOH A . D 4 HOH 156 556 65 HOH HOH A . D 4 HOH 157 557 70 HOH HOH A . D 4 HOH 158 558 146 HOH HOH A . D 4 HOH 159 559 73 HOH HOH A . D 4 HOH 160 560 201 HOH HOH A . D 4 HOH 161 561 322 HOH HOH A . D 4 HOH 162 562 45 HOH HOH A . D 4 HOH 163 563 382 HOH HOH A . D 4 HOH 164 564 334 HOH HOH A . D 4 HOH 165 565 75 HOH HOH A . D 4 HOH 166 566 185 HOH HOH A . D 4 HOH 167 567 127 HOH HOH A . D 4 HOH 168 568 351 HOH HOH A . D 4 HOH 169 569 214 HOH HOH A . D 4 HOH 170 570 131 HOH HOH A . D 4 HOH 171 571 359 HOH HOH A . D 4 HOH 172 572 153 HOH HOH A . D 4 HOH 173 573 197 HOH HOH A . D 4 HOH 174 574 339 HOH HOH A . D 4 HOH 175 575 380 HOH HOH A . D 4 HOH 176 576 345 HOH HOH A . D 4 HOH 177 577 91 HOH HOH A . D 4 HOH 178 578 141 HOH HOH A . D 4 HOH 179 579 130 HOH HOH A . D 4 HOH 180 580 158 HOH HOH A . D 4 HOH 181 581 320 HOH HOH A . D 4 HOH 182 582 169 HOH HOH A . D 4 HOH 183 583 156 HOH HOH A . D 4 HOH 184 584 239 HOH HOH A . D 4 HOH 185 585 161 HOH HOH A . D 4 HOH 186 586 213 HOH HOH A . D 4 HOH 187 587 350 HOH HOH A . D 4 HOH 188 588 379 HOH HOH A . D 4 HOH 189 589 3 HOH HOH A . D 4 HOH 190 590 110 HOH HOH A . D 4 HOH 191 591 234 HOH HOH A . D 4 HOH 192 592 363 HOH HOH A . D 4 HOH 193 593 204 HOH HOH A . D 4 HOH 194 594 94 HOH HOH A . D 4 HOH 195 595 109 HOH HOH A . D 4 HOH 196 596 355 HOH HOH A . D 4 HOH 197 597 324 HOH HOH A . D 4 HOH 198 598 377 HOH HOH A . D 4 HOH 199 599 374 HOH HOH A . D 4 HOH 200 600 159 HOH HOH A . D 4 HOH 201 601 366 HOH HOH A . D 4 HOH 202 602 321 HOH HOH A . D 4 HOH 203 603 333 HOH HOH A . D 4 HOH 204 604 224 HOH HOH A . D 4 HOH 205 605 349 HOH HOH A . D 4 HOH 206 606 171 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2019-12-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.8.0222 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 Aimless 0.5.32 29/03/17 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 PDB_EXTRACT 3.23 'SEP. 23, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? program ? ? 'data reduction' ? ? ? 5 REFMAC . ? program ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 430 ? ? O A HOH 568 ? ? 1.99 2 1 C5 A UNL 302 ? ? O A HOH 401 ? ? 2.05 3 1 OD1 A ASN 226 ? ? O A HOH 402 ? ? 2.15 4 1 O A HOH 416 ? ? O A HOH 563 ? ? 2.15 5 1 O A HOH 437 ? ? O A HOH 598 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 574 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 587 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_656 _pdbx_validate_symm_contact.dist 1.49 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 PHE _pdbx_validate_rmsd_bond.auth_seq_id_1 0 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 ASN _pdbx_validate_rmsd_bond.auth_seq_id_2 7 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.506 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation 0.170 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 49 ? ? 94.39 -8.98 2 1 ASP A 155 ? ? -169.00 110.25 3 1 VAL A 168 ? ? -123.81 -57.60 4 1 ASP A 176 ? ? -127.98 -168.03 5 1 ASP A 176 ? ? -121.47 -168.03 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 29 ? ? 0.087 'SIDE CHAIN' 2 1 ARG A 30 ? ? 0.112 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 49 ? CB ? A ARG 44 CB 2 1 Y 1 A ARG 49 ? CG ? A ARG 44 CG 3 1 Y 1 A ARG 49 ? CD ? A ARG 44 CD 4 1 Y 1 A ARG 49 ? NE ? A ARG 44 NE 5 1 Y 1 A ARG 49 ? CZ ? A ARG 44 CZ 6 1 Y 1 A ARG 49 ? NH1 ? A ARG 44 NH1 7 1 Y 1 A ARG 49 ? NH2 ? A ARG 44 NH2 8 1 Y 1 A GLU 210 ? CG ? A GLU 205 CG 9 1 Y 1 A GLU 210 ? CD ? A GLU 205 CD 10 1 Y 1 A GLU 210 ? OE1 ? A GLU 205 OE1 11 1 Y 1 A GLU 210 ? OE2 ? A GLU 205 OE2 # _pdbx_deposit_group.group_id G_1002053 _pdbx_deposit_group.group_description ;human OUTB2 screened against covalent fragments by X-ray Crystallography at the XChem facility of Diamond Light Source beamline I04-1 ; _pdbx_deposit_group.group_title 'Covalent fragment group deposition' _pdbx_deposit_group.group_type 'changed state' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-[(5-chlorothiophen-2-yl)methyl]acetamide' J64 3 'UNKNOWN LIGAND' UNL 4 water HOH #