HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-AUG-18 5QJ1 TITLE CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS GENOTYPE 2A STRAIN JFH1 TITLE 2 L30S NS5B RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH 6- TITLE 3 (ETHYLAMINO)-2-(4-FLUOROPHENYL)-5-(3-{[1-(5-FLUOROPYRIMIDIN-2-YL) TITLE 4 CYCLOPROPYL]CARBAMOYL}-4-METHOXYPHENYL)-N-METHYL-1-BENZOFURAN-3- TITLE 5 CARBOXAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL CATALYTIC REGION, UNP RESIDUES 2443- 3007; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPACIVIRUS C; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 STRAIN: 1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS RDRP STRUCTURE (FINGERS, PALM, THUMB DOMAINS), ACETYLATION, KEYWDS 2 APOPTOSIS, ATP-BINDING, CAPSID PROTEIN, CELL MEMBRANE, CYTOPLASM, KEYWDS 3 DISULFIDE BOND, ENDOPLASMIC RETICULUM, ENVELOPE PROTEIN, FUSION KEYWDS 4 PROTEIN, GLYCOPROTEIN, HELICASE, HOST-VIRUS INTERACTION, HYDROLASE, KEYWDS 5 INTERFERON ANTIVIRAL SYSTEM EVASION, LIPID DROPLET, LIPOPROTEIN, KEYWDS 6 MEMBRANE, METAL- BINDING, MITOCHONDRION, MULTIFUNCTIONAL ENZYME, KEYWDS 7 NUCLEOTIDE- BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, ONCOGENE, KEYWDS 8 PALMITATE, PHOSPHOPROTEIN, PROTEASE, RIBONUCLEOPROTEIN, RNA KEYWDS 9 REPLICATION, RNA-BINDING, RNA-DIRECTED RNA POLYMERASE, SECRETED, KEYWDS 10 SERINE PROTEASE, SH3-BINDING, THIOL PROTEASE, TRANSCRIPTION, KEYWDS 11 TRANSCRIPTION REGULATION, TRANSFERASE, TRANSMEMBRANE, UBL KEYWDS 12 CONJUGATION, VIRAL NUCLEOPROTEIN, VIRION, ZINC, TRANSFERASE- KEYWDS 13 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.SHERIFF REVDAT 4 06-MAR-24 5QJ1 1 REMARK REVDAT 3 12-MAY-21 5QJ1 1 REMARK REVDAT 2 16-JAN-19 5QJ1 1 JRNL REVDAT 1 21-NOV-18 5QJ1 0 JRNL AUTH K.S.YEUNG,B.R.BENO,K.MOSURE,J.ZHU,K.A.GRANT-YOUNG, JRNL AUTH 2 K.PARCELLA,P.ANJANAPPA,R.O.BORA,K.SELVAKUMAR,Y.K.WANG, JRNL AUTH 3 H.FANG,R.KRAUSE,K.RIGAT,M.LIU,J.LEMM,S.SHERIFF,M.WITMER, JRNL AUTH 4 J.TREDUP,A.JARDEL,K.KISH,D.PARKER,R.HASKELL,K.SANTONE, JRNL AUTH 5 N.A.MEANWELL,M.G.SOARS,S.B.ROBERTS,J.F.KADOW JRNL TITL STRUCTURE-PROPERTY BASIS FOR SOLVING TRANSPORTER-MEDIATED JRNL TITL 2 EFFLUX AND PAN-GENOTYPIC INHIBITION IN HCV NS5B INHIBITORS. JRNL REF ACS MED CHEM LETT V. 9 1217 2018 JRNL REFN ISSN 1948-5875 JRNL PMID 30613329 JRNL DOI 10.1021/ACSMEDCHEMLETT.8B00379 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1898 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2928 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1893 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2777 REMARK 3 BIN R VALUE (WORKING SET) : 0.1875 REMARK 3 BIN FREE R VALUE : 0.2203 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.16 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 151 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4203 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 156 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.91870 REMARK 3 B22 (A**2) : -4.59300 REMARK 3 B33 (A**2) : 1.67430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.201 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.163 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.190 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.160 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4478 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6102 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1522 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 775 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4478 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 578 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5342 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.36 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.98 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5QJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1001402010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38057 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 46.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54400 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1YUY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH 4.6, 200 MM REMARK 280 (NH4)2SO4, 25% (W/V) PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.72000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.72000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 602 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 PRO A 149 REMARK 465 ALA A 150 REMARK 465 LYS A 151 REMARK 465 GLY A 152 REMARK 465 SER A 548 REMARK 465 SER A 549 REMARK 465 TRP A 550 REMARK 465 PHE A 551 REMARK 465 THR A 552 REMARK 465 VAL A 553 REMARK 465 GLY A 554 REMARK 465 ALA A 555 REMARK 465 GLY A 556 REMARK 465 GLY A 557 REMARK 465 GLY A 558 REMARK 465 ASP A 559 REMARK 465 ILE A 560 REMARK 465 PHE A 561 REMARK 465 HIS A 562 REMARK 465 SER A 563 REMARK 465 VAL A 564 REMARK 465 SER A 565 REMARK 465 ARG A 566 REMARK 465 ALA A 567 REMARK 465 ARG A 568 REMARK 465 PRO A 569 REMARK 465 ARG A 570 REMARK 465 SER A 571 REMARK 465 LEU A 572 REMARK 465 LEU A 573 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 15 OG REMARK 470 LYS A 43 CD CE NZ REMARK 470 LYS A 51 CD CE NZ REMARK 470 LYS A 106 CE NZ REMARK 470 LYS A 141 CE NZ REMARK 470 LYS A 212 CE NZ REMARK 470 GLU A 330 CD OE1 OE2 REMARK 470 ARG A 334 NE CZ NH1 NH2 REMARK 470 GLU A 446 CG CD OE1 OE2 REMARK 470 LYS A 491 CE NZ REMARK 470 LYS A 531 CG CD CE NZ REMARK 470 LYS A 535 CD CE NZ REMARK 470 ARG A 543 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 544 CG CD1 CD2 REMARK 470 LEU A 545 CG CD1 CD2 REMARK 470 ASP A 546 CG OD1 OD2 REMARK 470 LEU A 547 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 260 -52.92 -126.53 REMARK 500 SER A 347 53.02 70.93 REMARK 500 HIS A 402 92.20 -62.60 REMARK 500 TRP A 408 -2.37 -150.34 REMARK 500 VAL A 424 -65.10 -107.52 REMARK 500 SER A 473 33.71 -144.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J6J A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 617 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 618 DBREF 5QJ1 A 1 573 UNP R9THT8 R9THT8_9HEPC 2443 3015 SEQADV 5QJ1 MET A 0 UNP R9THT8 INITIATING METHIONINE SEQADV 5QJ1 SER A 30 UNP R9THT8 LEU 2472 ENGINEERED MUTATION SEQRES 1 A 574 MET SER MET SER TYR SER TRP THR GLY ALA LEU ILE THR SEQRES 2 A 574 PRO CYS SER PRO GLU GLU GLU LYS LEU PRO ILE ASN PRO SEQRES 3 A 574 LEU SER ASN SER SER LEU ARG TYR HIS ASN LYS VAL TYR SEQRES 4 A 574 CYS THR THR SER LYS SER ALA SER GLN ARG ALA LYS LYS SEQRES 5 A 574 VAL THR PHE ASP ARG THR GLN VAL LEU ASP ALA HIS TYR SEQRES 6 A 574 ASP SER VAL LEU LYS ASP ILE LYS LEU ALA ALA SER LYS SEQRES 7 A 574 VAL SER ALA ARG LEU LEU THR LEU GLU GLU ALA CYS GLN SEQRES 8 A 574 LEU THR PRO PRO HIS SER ALA ARG SER LYS TYR GLY PHE SEQRES 9 A 574 GLY ALA LYS GLU VAL ARG SER LEU SER GLY ARG ALA VAL SEQRES 10 A 574 ASN HIS ILE LYS SER VAL TRP LYS ASP LEU LEU GLU ASP SEQRES 11 A 574 PRO GLN THR PRO ILE PRO THR THR ILE MET ALA LYS ASN SEQRES 12 A 574 GLU VAL PHE CYS VAL ASP PRO ALA LYS GLY GLY LYS LYS SEQRES 13 A 574 PRO ALA ARG LEU ILE VAL TYR PRO ASP LEU GLY VAL ARG SEQRES 14 A 574 VAL CYS GLU LYS MET ALA LEU TYR ASP ILE THR GLN LYS SEQRES 15 A 574 LEU PRO GLN ALA VAL MET GLY ALA SER TYR GLY PHE GLN SEQRES 16 A 574 TYR SER PRO ALA GLN ARG VAL GLU TYR LEU LEU LYS ALA SEQRES 17 A 574 TRP ALA GLU LYS LYS ASP PRO MET GLY PHE SER TYR ASP SEQRES 18 A 574 THR ARG CYS PHE ASP SER THR VAL THR GLU ARG ASP ILE SEQRES 19 A 574 ARG THR GLU GLU SER ILE TYR GLN ALA CYS SER LEU PRO SEQRES 20 A 574 GLU GLU ALA ARG THR ALA ILE HIS SER LEU THR GLU ARG SEQRES 21 A 574 LEU TYR VAL GLY GLY PRO MET PHE ASN SER LYS GLY GLN SEQRES 22 A 574 THR CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU SEQRES 23 A 574 THR THR SER MET GLY ASN THR ILE THR CYS TYR VAL LYS SEQRES 24 A 574 ALA LEU ALA ALA CYS LYS ALA ALA GLY ILE VAL ALA PRO SEQRES 25 A 574 THR MET LEU VAL CYS GLY ASP ASP LEU VAL VAL ILE SER SEQRES 26 A 574 GLU SER GLN GLY THR GLU GLU ASP GLU ARG ASN LEU ARG SEQRES 27 A 574 ALA PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO SEQRES 28 A 574 GLY ASP PRO PRO ARG PRO GLU TYR ASP LEU GLU LEU ILE SEQRES 29 A 574 THR SER CYS SER SER ASN VAL SER VAL ALA LEU GLY PRO SEQRES 30 A 574 ARG GLY ARG ARG ARG TYR TYR LEU THR ARG ASP PRO THR SEQRES 31 A 574 THR PRO LEU ALA ARG ALA ALA TRP GLU THR VAL ARG HIS SEQRES 32 A 574 SER PRO ILE ASN SER TRP LEU GLY ASN ILE ILE GLN TYR SEQRES 33 A 574 ALA PRO THR ILE TRP VAL ARG MET VAL LEU MET THR HIS SEQRES 34 A 574 PHE PHE SER ILE LEU MET VAL GLN ASP THR LEU ASP GLN SEQRES 35 A 574 ASN LEU ASN PHE GLU MET TYR GLY SER VAL TYR SER VAL SEQRES 36 A 574 ASN PRO LEU ASP LEU PRO ALA ILE ILE GLU ARG LEU HIS SEQRES 37 A 574 GLY LEU ASP ALA PHE SER MET HIS THR TYR SER HIS HIS SEQRES 38 A 574 GLU LEU THR ARG VAL ALA SER ALA LEU ARG LYS LEU GLY SEQRES 39 A 574 ALA PRO PRO LEU ARG VAL TRP LYS SER ARG ALA ARG ALA SEQRES 40 A 574 VAL ARG ALA SER LEU ILE SER ARG GLY GLY LYS ALA ALA SEQRES 41 A 574 VAL CYS GLY ARG TYR LEU PHE ASN TRP ALA VAL LYS THR SEQRES 42 A 574 LYS LEU LYS LEU THR PRO LEU PRO GLU ALA ARG LEU LEU SEQRES 43 A 574 ASP LEU SER SER TRP PHE THR VAL GLY ALA GLY GLY GLY SEQRES 44 A 574 ASP ILE PHE HIS SER VAL SER ARG ALA ARG PRO ARG SER SEQRES 45 A 574 LEU LEU HET J6J A 601 73 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET SO4 A 609 5 HET SO4 A 610 5 HET SO4 A 611 5 HET SO4 A 612 5 HET GOL A 613 6 HET GOL A 614 6 HET GOL A 615 6 HET PG4 A 616 13 HET PG4 A 617 13 HET PG4 A 618 13 HETNAM J6J 6-(ETHYLAMINO)-2-(4-FLUOROPHENYL)-5-(3-{[1-(5- HETNAM 2 J6J FLUOROPYRIMIDIN-2-YL)CYCLOPROPYL]CARBAMOYL}-4- HETNAM 3 J6J METHOXYPHENYL)-N-METHYL-1-BENZOFURAN-3-CARBOXAMIDE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 J6J C33 H29 F2 N5 O4 FORMUL 3 SO4 11(O4 S 2-) FORMUL 14 GOL 3(C3 H8 O3) FORMUL 17 PG4 3(C8 H18 O5) FORMUL 20 HOH *322(H2 O) HELIX 1 AA1 SER A 27 LYS A 36 1 10 HELIX 2 AA2 THR A 41 LYS A 43 5 3 HELIX 3 AA3 SER A 44 THR A 53 1 10 HELIX 4 AA4 ASP A 61 SER A 76 1 16 HELIX 5 AA5 THR A 84 LEU A 91 1 8 HELIX 6 AA6 GLY A 104 SER A 110 1 7 HELIX 7 AA7 SER A 112 ASP A 129 1 18 HELIX 8 AA8 ASP A 164 GLY A 188 1 25 HELIX 9 AA9 ALA A 189 TYR A 195 5 7 HELIX 10 AB1 SER A 196 GLU A 210 1 15 HELIX 11 AB2 CYS A 223 VAL A 228 1 6 HELIX 12 AB3 THR A 229 CYS A 243 1 15 HELIX 13 AB4 PRO A 246 LEU A 260 1 15 HELIX 14 AB5 THR A 286 GLY A 307 1 22 HELIX 15 AB6 GLY A 328 TYR A 346 1 19 HELIX 16 AB7 ASP A 359 ILE A 363 5 5 HELIX 17 AB8 PRO A 388 ARG A 401 1 14 HELIX 18 AB9 TRP A 408 TYR A 415 1 8 HELIX 19 AC1 THR A 418 VAL A 424 1 7 HELIX 20 AC2 VAL A 424 GLN A 436 1 13 HELIX 21 AC3 ASN A 455 LEU A 457 5 3 HELIX 22 AC4 ASP A 458 GLY A 468 1 11 HELIX 23 AC5 LEU A 469 SER A 473 5 5 HELIX 24 AC6 SER A 478 GLY A 493 1 16 HELIX 25 AC7 PRO A 496 SER A 513 1 18 HELIX 26 AC8 GLY A 515 PHE A 526 1 12 HELIX 27 AC9 ASN A 527 VAL A 530 5 4 HELIX 28 AD1 LEU A 539 LEU A 544 5 6 SHEET 1 AA1 5 TYR A 4 TRP A 6 0 SHEET 2 AA1 5 THR A 273 ARG A 277 -1 O TYR A 276 N SER A 5 SHEET 3 AA1 5 GLY A 264 PHE A 267 -1 N MET A 266 O GLY A 275 SHEET 4 AA1 5 THR A 136 ALA A 140 1 N THR A 136 O PHE A 267 SHEET 5 AA1 5 LEU A 159 PRO A 163 -1 O ILE A 160 N MET A 139 SHEET 1 AA2 2 VAL A 37 CYS A 39 0 SHEET 2 AA2 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 AA3 3 PRO A 214 ASP A 220 0 SHEET 2 AA3 3 ASP A 319 GLU A 325 -1 O SER A 324 N MET A 215 SHEET 3 AA3 3 VAL A 309 CYS A 316 -1 N CYS A 316 O ASP A 319 SHEET 1 AA4 2 SER A 368 LEU A 374 0 SHEET 2 AA4 2 ARG A 380 ARG A 386 -1 O ARG A 381 N ALA A 373 SHEET 1 AA5 2 LEU A 443 GLU A 446 0 SHEET 2 AA5 2 VAL A 451 VAL A 454 -1 O TYR A 452 N PHE A 445 SITE 1 AC1 19 PHE A 193 GLN A 194 TYR A 195 SER A 196 SITE 2 AC1 19 ARG A 200 LEU A 204 LEU A 314 CYS A 316 SITE 3 AC1 19 VAL A 321 ILE A 363 SER A 365 CYS A 366 SITE 4 AC1 19 SER A 368 LEU A 384 GLN A 414 TYR A 415 SITE 5 AC1 19 TYR A 448 LEU A 466 HOH A 706 SITE 1 AC2 4 ASN A 24 SER A 27 SER A 30 HOH A 736 SITE 1 AC3 10 ARG A 422 SER A 473 MET A 474 HIS A 475 SITE 2 AC3 10 ASN A 527 TRP A 528 LYS A 533 HOH A 746 SITE 3 AC3 10 HOH A 752 HOH A 841 SITE 1 AC4 4 ARG A 505 VAL A 530 LYS A 531 THR A 532 SITE 1 AC5 7 PRO A 93 SER A 96 ARG A 168 LYS A 172 SITE 2 AC5 7 HOH A 793 HOH A 856 HOH A 887 SITE 1 AC6 8 LYS A 77 THR A 273 HOH A 730 HOH A 734 SITE 2 AC6 8 HOH A 786 HOH A 804 HOH A 875 HOH A 914 SITE 1 AC7 8 GLY A 375 PRO A 376 ARG A 377 GLY A 378 SITE 2 AC7 8 ARG A 379 ARG A 381 HOH A 781 HOH A 912 SITE 1 AC8 7 GLU A 361 SER A 371 VAL A 372 SER A 478 SITE 2 AC8 7 HOH A 743 HOH A 776 HOH A 791 SITE 1 AC9 5 PRO A 94 GLY A 104 ALA A 105 LYS A 106 SITE 2 AC9 5 HOH A 768 SITE 1 AD1 2 GLY A 188 ALA A 189 SITE 1 AD2 4 ARG A 508 ILE A 512 ARG A 523 LEU A 534 SITE 1 AD3 4 PRO A 496 LEU A 497 ARG A 498 HOH A 885 SITE 1 AD4 8 TYR A 4 ARG A 48 VAL A 52 ARG A 158 SITE 2 AD4 8 LEU A 159 ASP A 225 SER A 226 HOH A 712 SITE 1 AD5 4 LYS A 50 PRO A 246 GLU A 247 GLU A 248 SITE 1 AD6 4 GLU A 464 GLY A 468 LEU A 469 HOH A 895 SITE 1 AD7 6 LYS A 100 THR A 137 ASN A 268 SER A 269 SITE 2 AD7 6 GLY A 271 HOH A 880 SITE 1 AD8 7 PHE A 145 CYS A 146 SER A 367 ARG A 386 SITE 2 AD8 7 THR A 390 ARG A 394 HOH A 833 SITE 1 AD9 5 HIS A 118 SER A 121 THR A 329 GLU A 333 SITE 2 AD9 5 HOH A 790 CRYST1 93.440 116.550 64.710 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010702 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015454 0.00000