data_5QPC # _entry.id 5QPC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5QPC pdb_00005qpc 10.2210/pdb5qpc/pdb WWPDB D_1001402237 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-05-08 2 'Structure model' 1 1 2019-11-20 3 'Structure model' 1 2 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_source 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' diffrn_radiation_wavelength 6 3 'Structure model' diffrn_source # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_diffrn_source.pdbx_wavelength_list' 2 2 'Structure model' '_diffrn_source.type' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_diffrn_radiation_wavelength.wavelength' 6 3 'Structure model' '_diffrn_source.pdbx_synchrotron_beamline' # _pdbx_database_status.entry_id 5QPC _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2019-02-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nelson, E.R.' 1 ? 'Velupillai, S.' 2 ? 'Talon, R.' 3 ? 'Collins, P.M.' 4 ? 'Krojer, T.' 5 ? 'Wang, D.' 6 ? 'Brandao-Neto, J.' 7 ? 'Douangamath, A.' 8 ? 'Burgess-Brown, N.' 9 ? 'Arrowsmith, C.H.' 10 ? 'Bountra, C.' 11 ? 'Huber, K.' 12 ? 'von Delft, F.' 13 ? # _citation.id primary _citation.title 'PanDDA analysis group deposition of ground-state model' _citation.journal_abbrev 'To Be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Nelson, E.R.' ? 1 primary 'Velupillai, S.' ? 2 primary 'Talon, R.' ? 3 primary 'Collins, P.M.' ? 4 primary 'Krojer, T.' ? 5 primary 'Wang, D.' ? 6 primary 'Brandao-Neto, J.' ? 7 primary 'Douangamath, A.' ? 8 primary 'Burgess-Brown, N.' ? 9 primary 'Arrowsmith, C.H.' ? 10 primary 'Bountra, C.' ? 11 primary 'Huber, K.' ? 12 primary 'von Delft, F.' ? 13 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DCP2 (NUDT20)' 19073.738 1 3.6.1.62 ? 'UNP residues 95-260' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 3 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 1 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 5 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 6 water nat water 18.015 92 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Nucleoside diphosphate-linked moiety X motif 20, Nudix motif 20, mRNA-decapping enzyme 2, hDpc, m7GpppN-mRNA hydrolase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLAR LYIIPGIPKDTKFNPKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLSRRFGDSSDSDNGF SSTGSTP ; _entity_poly.pdbx_seq_one_letter_code_can ;SMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLAR LYIIPGIPKDTKFNPKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLSRRFGDSSDSDNGF SSTGSTP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'DIMETHYL SULFOXIDE' DMS 4 'ACETATE ION' ACT 5 'DI(HYDROXYETHYL)ETHER' PEG 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLY n 1 4 VAL n 1 5 PRO n 1 6 THR n 1 7 TYR n 1 8 GLY n 1 9 ALA n 1 10 ILE n 1 11 ILE n 1 12 LEU n 1 13 ASP n 1 14 GLU n 1 15 THR n 1 16 LEU n 1 17 GLU n 1 18 ASN n 1 19 VAL n 1 20 LEU n 1 21 LEU n 1 22 VAL n 1 23 GLN n 1 24 GLY n 1 25 TYR n 1 26 LEU n 1 27 ALA n 1 28 LYS n 1 29 SER n 1 30 GLY n 1 31 TRP n 1 32 GLY n 1 33 PHE n 1 34 PRO n 1 35 LYS n 1 36 GLY n 1 37 LYS n 1 38 VAL n 1 39 ASN n 1 40 LYS n 1 41 GLU n 1 42 GLU n 1 43 ALA n 1 44 PRO n 1 45 HIS n 1 46 ASP n 1 47 CYS n 1 48 ALA n 1 49 ALA n 1 50 ARG n 1 51 GLU n 1 52 VAL n 1 53 PHE n 1 54 GLU n 1 55 GLU n 1 56 THR n 1 57 GLY n 1 58 PHE n 1 59 ASP n 1 60 ILE n 1 61 LYS n 1 62 ASP n 1 63 TYR n 1 64 ILE n 1 65 CYS n 1 66 LYS n 1 67 ASP n 1 68 ASP n 1 69 TYR n 1 70 ILE n 1 71 GLU n 1 72 LEU n 1 73 ARG n 1 74 ILE n 1 75 ASN n 1 76 ASP n 1 77 GLN n 1 78 LEU n 1 79 ALA n 1 80 ARG n 1 81 LEU n 1 82 TYR n 1 83 ILE n 1 84 ILE n 1 85 PRO n 1 86 GLY n 1 87 ILE n 1 88 PRO n 1 89 LYS n 1 90 ASP n 1 91 THR n 1 92 LYS n 1 93 PHE n 1 94 ASN n 1 95 PRO n 1 96 LYS n 1 97 THR n 1 98 ARG n 1 99 ARG n 1 100 GLU n 1 101 ILE n 1 102 ARG n 1 103 ASN n 1 104 ILE n 1 105 GLU n 1 106 TRP n 1 107 PHE n 1 108 SER n 1 109 ILE n 1 110 GLU n 1 111 LYS n 1 112 LEU n 1 113 PRO n 1 114 CYS n 1 115 HIS n 1 116 ARG n 1 117 ASN n 1 118 ASP n 1 119 MET n 1 120 THR n 1 121 PRO n 1 122 LYS n 1 123 SER n 1 124 LYS n 1 125 LEU n 1 126 GLY n 1 127 LEU n 1 128 ALA n 1 129 PRO n 1 130 ASN n 1 131 LYS n 1 132 PHE n 1 133 PHE n 1 134 MET n 1 135 ALA n 1 136 ILE n 1 137 PRO n 1 138 PHE n 1 139 ILE n 1 140 ARG n 1 141 PRO n 1 142 LEU n 1 143 ARG n 1 144 ASP n 1 145 TRP n 1 146 LEU n 1 147 SER n 1 148 ARG n 1 149 ARG n 1 150 PHE n 1 151 GLY n 1 152 ASP n 1 153 SER n 1 154 SER n 1 155 ASP n 1 156 SER n 1 157 ASP n 1 158 ASN n 1 159 GLY n 1 160 PHE n 1 161 SER n 1 162 SER n 1 163 THR n 1 164 GLY n 1 165 SER n 1 166 THR n 1 167 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 167 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DCP2, NUDT20' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 94 ? ? ? A . n A 1 2 MET 2 95 ? ? ? A . n A 1 3 GLY 3 96 96 GLY GLY A . n A 1 4 VAL 4 97 97 VAL VAL A . n A 1 5 PRO 5 98 98 PRO PRO A . n A 1 6 THR 6 99 99 THR THR A . n A 1 7 TYR 7 100 100 TYR TYR A . n A 1 8 GLY 8 101 101 GLY GLY A . n A 1 9 ALA 9 102 102 ALA ALA A . n A 1 10 ILE 10 103 103 ILE ILE A . n A 1 11 ILE 11 104 104 ILE ILE A . n A 1 12 LEU 12 105 105 LEU LEU A . n A 1 13 ASP 13 106 106 ASP ASP A . n A 1 14 GLU 14 107 107 GLU GLU A . n A 1 15 THR 15 108 108 THR THR A . n A 1 16 LEU 16 109 109 LEU LEU A . n A 1 17 GLU 17 110 110 GLU GLU A . n A 1 18 ASN 18 111 111 ASN ASN A . n A 1 19 VAL 19 112 112 VAL VAL A . n A 1 20 LEU 20 113 113 LEU LEU A . n A 1 21 LEU 21 114 114 LEU LEU A . n A 1 22 VAL 22 115 115 VAL VAL A . n A 1 23 GLN 23 116 116 GLN GLN A . n A 1 24 GLY 24 117 117 GLY GLY A . n A 1 25 TYR 25 118 118 TYR TYR A . n A 1 26 LEU 26 119 119 LEU LEU A . n A 1 27 ALA 27 120 120 ALA ALA A . n A 1 28 LYS 28 121 121 LYS LYS A . n A 1 29 SER 29 122 122 SER SER A . n A 1 30 GLY 30 123 123 GLY GLY A . n A 1 31 TRP 31 124 124 TRP TRP A . n A 1 32 GLY 32 125 125 GLY GLY A . n A 1 33 PHE 33 126 126 PHE PHE A . n A 1 34 PRO 34 127 127 PRO PRO A . n A 1 35 LYS 35 128 128 LYS LYS A . n A 1 36 GLY 36 129 129 GLY GLY A . n A 1 37 LYS 37 130 130 LYS LYS A . n A 1 38 VAL 38 131 131 VAL VAL A . n A 1 39 ASN 39 132 132 ASN ASN A . n A 1 40 LYS 40 133 133 LYS LYS A . n A 1 41 GLU 41 134 134 GLU GLU A . n A 1 42 GLU 42 135 135 GLU GLU A . n A 1 43 ALA 43 136 136 ALA ALA A . n A 1 44 PRO 44 137 137 PRO PRO A . n A 1 45 HIS 45 138 138 HIS HIS A . n A 1 46 ASP 46 139 139 ASP ASP A . n A 1 47 CYS 47 140 140 CYS CYS A . n A 1 48 ALA 48 141 141 ALA ALA A . n A 1 49 ALA 49 142 142 ALA ALA A . n A 1 50 ARG 50 143 143 ARG ARG A . n A 1 51 GLU 51 144 144 GLU GLU A . n A 1 52 VAL 52 145 145 VAL VAL A . n A 1 53 PHE 53 146 146 PHE PHE A . n A 1 54 GLU 54 147 147 GLU GLU A . n A 1 55 GLU 55 148 148 GLU GLU A . n A 1 56 THR 56 149 149 THR THR A . n A 1 57 GLY 57 150 150 GLY GLY A . n A 1 58 PHE 58 151 151 PHE PHE A . n A 1 59 ASP 59 152 152 ASP ASP A . n A 1 60 ILE 60 153 153 ILE ILE A . n A 1 61 LYS 61 154 154 LYS LYS A . n A 1 62 ASP 62 155 155 ASP ASP A . n A 1 63 TYR 63 156 156 TYR TYR A . n A 1 64 ILE 64 157 157 ILE ILE A . n A 1 65 CYS 65 158 158 CYS CYS A . n A 1 66 LYS 66 159 159 LYS LYS A . n A 1 67 ASP 67 160 160 ASP ASP A . n A 1 68 ASP 68 161 161 ASP ASP A . n A 1 69 TYR 69 162 162 TYR TYR A . n A 1 70 ILE 70 163 163 ILE ILE A . n A 1 71 GLU 71 164 164 GLU GLU A . n A 1 72 LEU 72 165 165 LEU LEU A . n A 1 73 ARG 73 166 166 ARG ARG A . n A 1 74 ILE 74 167 167 ILE ILE A . n A 1 75 ASN 75 168 168 ASN ASN A . n A 1 76 ASP 76 169 169 ASP ASP A . n A 1 77 GLN 77 170 170 GLN GLN A . n A 1 78 LEU 78 171 171 LEU LEU A . n A 1 79 ALA 79 172 172 ALA ALA A . n A 1 80 ARG 80 173 173 ARG ARG A . n A 1 81 LEU 81 174 174 LEU LEU A . n A 1 82 TYR 82 175 175 TYR TYR A . n A 1 83 ILE 83 176 176 ILE ILE A . n A 1 84 ILE 84 177 177 ILE ILE A . n A 1 85 PRO 85 178 178 PRO PRO A . n A 1 86 GLY 86 179 179 GLY GLY A . n A 1 87 ILE 87 180 180 ILE ILE A . n A 1 88 PRO 88 181 181 PRO PRO A . n A 1 89 LYS 89 182 182 LYS LYS A . n A 1 90 ASP 90 183 183 ASP ASP A . n A 1 91 THR 91 184 184 THR THR A . n A 1 92 LYS 92 185 185 LYS LYS A . n A 1 93 PHE 93 186 186 PHE PHE A . n A 1 94 ASN 94 187 187 ASN ASN A . n A 1 95 PRO 95 188 188 PRO PRO A . n A 1 96 LYS 96 189 189 LYS LYS A . n A 1 97 THR 97 190 190 THR THR A . n A 1 98 ARG 98 191 191 ARG ARG A . n A 1 99 ARG 99 192 192 ARG ARG A . n A 1 100 GLU 100 193 193 GLU GLU A . n A 1 101 ILE 101 194 194 ILE ILE A . n A 1 102 ARG 102 195 195 ARG ARG A . n A 1 103 ASN 103 196 196 ASN ASN A . n A 1 104 ILE 104 197 197 ILE ILE A . n A 1 105 GLU 105 198 198 GLU GLU A . n A 1 106 TRP 106 199 199 TRP TRP A . n A 1 107 PHE 107 200 200 PHE PHE A . n A 1 108 SER 108 201 201 SER SER A . n A 1 109 ILE 109 202 202 ILE ILE A . n A 1 110 GLU 110 203 203 GLU GLU A . n A 1 111 LYS 111 204 204 LYS LYS A . n A 1 112 LEU 112 205 205 LEU LEU A . n A 1 113 PRO 113 206 206 PRO PRO A . n A 1 114 CYS 114 207 207 CYS CYS A . n A 1 115 HIS 115 208 208 HIS HIS A . n A 1 116 ARG 116 209 209 ARG ARG A . n A 1 117 ASN 117 210 210 ASN ASN A . n A 1 118 ASP 118 211 211 ASP ASP A . n A 1 119 MET 119 212 212 MET MET A . n A 1 120 THR 120 213 213 THR THR A . n A 1 121 PRO 121 214 214 PRO PRO A . n A 1 122 LYS 122 215 215 LYS LYS A . n A 1 123 SER 123 216 216 SER SER A . n A 1 124 LYS 124 217 217 LYS LYS A . n A 1 125 LEU 125 218 218 LEU LEU A . n A 1 126 GLY 126 219 219 GLY GLY A . n A 1 127 LEU 127 220 220 LEU LEU A . n A 1 128 ALA 128 221 221 ALA ALA A . n A 1 129 PRO 129 222 222 PRO PRO A . n A 1 130 ASN 130 223 223 ASN ASN A . n A 1 131 LYS 131 224 224 LYS LYS A . n A 1 132 PHE 132 225 225 PHE PHE A . n A 1 133 PHE 133 226 226 PHE PHE A . n A 1 134 MET 134 227 227 MET MET A . n A 1 135 ALA 135 228 228 ALA ALA A . n A 1 136 ILE 136 229 229 ILE ILE A . n A 1 137 PRO 137 230 230 PRO PRO A . n A 1 138 PHE 138 231 231 PHE PHE A . n A 1 139 ILE 139 232 232 ILE ILE A . n A 1 140 ARG 140 233 233 ARG ARG A . n A 1 141 PRO 141 234 234 PRO PRO A . n A 1 142 LEU 142 235 235 LEU LEU A . n A 1 143 ARG 143 236 236 ARG ARG A . n A 1 144 ASP 144 237 237 ASP ASP A . n A 1 145 TRP 145 238 238 TRP TRP A . n A 1 146 LEU 146 239 239 LEU LEU A . n A 1 147 SER 147 240 240 SER SER A . n A 1 148 ARG 148 241 241 ARG ARG A . n A 1 149 ARG 149 242 242 ARG ARG A . n A 1 150 PHE 150 243 243 PHE PHE A . n A 1 151 GLY 151 244 244 GLY GLY A . n A 1 152 ASP 152 245 ? ? ? A . n A 1 153 SER 153 246 ? ? ? A . n A 1 154 SER 154 247 ? ? ? A . n A 1 155 ASP 155 248 ? ? ? A . n A 1 156 SER 156 249 ? ? ? A . n A 1 157 ASP 157 250 ? ? ? A . n A 1 158 ASN 158 251 ? ? ? A . n A 1 159 GLY 159 252 ? ? ? A . n A 1 160 PHE 160 253 ? ? ? A . n A 1 161 SER 161 254 ? ? ? A . n A 1 162 SER 162 255 ? ? ? A . n A 1 163 THR 163 256 ? ? ? A . n A 1 164 GLY 164 257 ? ? ? A . n A 1 165 SER 165 258 ? ? ? A . n A 1 166 THR 166 259 ? ? ? A . n A 1 167 PRO 167 260 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 301 2 EDO EDO A . C 2 EDO 1 302 3 EDO EDO A . D 3 DMS 1 303 1 DMS DMS A . E 4 ACT 1 304 1 ACT ACT A . F 4 ACT 1 305 2 ACT ACT A . G 5 PEG 1 306 1 PEG PEG A . H 6 HOH 1 401 64 HOH HOH A . H 6 HOH 2 402 104 HOH HOH A . H 6 HOH 3 403 83 HOH HOH A . H 6 HOH 4 404 19 HOH HOH A . H 6 HOH 5 405 70 HOH HOH A . H 6 HOH 6 406 10 HOH HOH A . H 6 HOH 7 407 71 HOH HOH A . H 6 HOH 8 408 66 HOH HOH A . H 6 HOH 9 409 55 HOH HOH A . H 6 HOH 10 410 39 HOH HOH A . H 6 HOH 11 411 60 HOH HOH A . H 6 HOH 12 412 23 HOH HOH A . H 6 HOH 13 413 100 HOH HOH A . H 6 HOH 14 414 12 HOH HOH A . H 6 HOH 15 415 38 HOH HOH A . H 6 HOH 16 416 81 HOH HOH A . H 6 HOH 17 417 17 HOH HOH A . H 6 HOH 18 418 95 HOH HOH A . H 6 HOH 19 419 78 HOH HOH A . H 6 HOH 20 420 76 HOH HOH A . H 6 HOH 21 421 15 HOH HOH A . H 6 HOH 22 422 1 HOH HOH A . H 6 HOH 23 423 16 HOH HOH A . H 6 HOH 24 424 13 HOH HOH A . H 6 HOH 25 425 67 HOH HOH A . H 6 HOH 26 426 31 HOH HOH A . H 6 HOH 27 427 46 HOH HOH A . H 6 HOH 28 428 68 HOH HOH A . H 6 HOH 29 429 5 HOH HOH A . H 6 HOH 30 430 90 HOH HOH A . H 6 HOH 31 431 94 HOH HOH A . H 6 HOH 32 432 8 HOH HOH A . H 6 HOH 33 433 96 HOH HOH A . H 6 HOH 34 434 2 HOH HOH A . H 6 HOH 35 435 32 HOH HOH A . H 6 HOH 36 436 18 HOH HOH A . H 6 HOH 37 437 103 HOH HOH A . H 6 HOH 38 438 102 HOH HOH A . H 6 HOH 39 439 24 HOH HOH A . H 6 HOH 40 440 85 HOH HOH A . H 6 HOH 41 441 6 HOH HOH A . H 6 HOH 42 442 88 HOH HOH A . H 6 HOH 43 443 9 HOH HOH A . H 6 HOH 44 444 59 HOH HOH A . H 6 HOH 45 445 3 HOH HOH A . H 6 HOH 46 446 65 HOH HOH A . H 6 HOH 47 447 35 HOH HOH A . H 6 HOH 48 448 7 HOH HOH A . H 6 HOH 49 449 62 HOH HOH A . H 6 HOH 50 450 50 HOH HOH A . H 6 HOH 51 451 4 HOH HOH A . H 6 HOH 52 452 79 HOH HOH A . H 6 HOH 53 453 97 HOH HOH A . H 6 HOH 54 454 80 HOH HOH A . H 6 HOH 55 455 29 HOH HOH A . H 6 HOH 56 456 28 HOH HOH A . H 6 HOH 57 457 72 HOH HOH A . H 6 HOH 58 458 22 HOH HOH A . H 6 HOH 59 459 21 HOH HOH A . H 6 HOH 60 460 14 HOH HOH A . H 6 HOH 61 461 40 HOH HOH A . H 6 HOH 62 462 27 HOH HOH A . H 6 HOH 63 463 43 HOH HOH A . H 6 HOH 64 464 30 HOH HOH A . H 6 HOH 65 465 42 HOH HOH A . H 6 HOH 66 466 11 HOH HOH A . H 6 HOH 67 467 75 HOH HOH A . H 6 HOH 68 468 84 HOH HOH A . H 6 HOH 69 469 33 HOH HOH A . H 6 HOH 70 470 25 HOH HOH A . H 6 HOH 71 471 57 HOH HOH A . H 6 HOH 72 472 74 HOH HOH A . H 6 HOH 73 473 69 HOH HOH A . H 6 HOH 74 474 86 HOH HOH A . H 6 HOH 75 475 105 HOH HOH A . H 6 HOH 76 476 36 HOH HOH A . H 6 HOH 77 477 101 HOH HOH A . H 6 HOH 78 478 92 HOH HOH A . H 6 HOH 79 479 47 HOH HOH A . H 6 HOH 80 480 109 HOH HOH A . H 6 HOH 81 481 87 HOH HOH A . H 6 HOH 82 482 91 HOH HOH A . H 6 HOH 83 483 98 HOH HOH A . H 6 HOH 84 484 106 HOH HOH A . H 6 HOH 85 485 52 HOH HOH A . H 6 HOH 86 486 107 HOH HOH A . H 6 HOH 87 487 26 HOH HOH A . H 6 HOH 88 488 20 HOH HOH A . H 6 HOH 89 489 56 HOH HOH A . H 6 HOH 90 490 51 HOH HOH A . H 6 HOH 91 491 41 HOH HOH A . H 6 HOH 92 492 93 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 130 ? CE ? A LYS 37 CE 2 1 Y 1 A LYS 130 ? NZ ? A LYS 37 NZ 3 1 Y 1 A LYS 133 ? CG ? A LYS 40 CG 4 1 Y 1 A LYS 133 ? CD ? A LYS 40 CD 5 1 Y 1 A LYS 133 ? CE ? A LYS 40 CE 6 1 Y 1 A LYS 133 ? NZ ? A LYS 40 NZ 7 1 Y 1 A GLU 134 ? CG ? A GLU 41 CG 8 1 Y 1 A GLU 134 ? CD ? A GLU 41 CD 9 1 Y 1 A GLU 134 ? OE1 ? A GLU 41 OE1 10 1 Y 1 A GLU 134 ? OE2 ? A GLU 41 OE2 11 1 Y 1 A LYS 159 ? CD ? A LYS 66 CD 12 1 Y 1 A LYS 159 ? CE ? A LYS 66 CE 13 1 Y 1 A LYS 159 ? NZ ? A LYS 66 NZ 14 1 Y 1 A LYS 185 ? CE ? A LYS 92 CE 15 1 Y 1 A LYS 185 ? NZ ? A LYS 92 NZ 16 1 Y 1 A LYS 215 ? CD ? A LYS 122 CD 17 1 Y 1 A LYS 215 ? CE ? A LYS 122 CE 18 1 Y 1 A LYS 215 ? NZ ? A LYS 122 NZ 19 1 Y 1 A LYS 217 ? CE ? A LYS 124 CE 20 1 Y 1 A LYS 217 ? NZ ? A LYS 124 NZ 21 1 Y 1 A ARG 241 ? CD ? A ARG 148 CD 22 1 Y 1 A ARG 241 ? NE ? A ARG 148 NE 23 1 Y 1 A ARG 241 ? CZ ? A ARG 148 CZ 24 1 Y 1 A ARG 241 ? NH1 ? A ARG 148 NH1 25 1 Y 1 A ARG 241 ? NH2 ? A ARG 148 NH2 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.8.0158 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 Aimless 0.5.29 17/10/16 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 PDB_EXTRACT 3.23 'SEP. 23, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? program ? ? 'data reduction' ? ? ? 5 REFMAC . ? program ? ? phasing ? ? ? # _cell.entry_id 5QPC _cell.length_a 48.230 _cell.length_b 61.198 _cell.length_c 66.037 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QPC _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.crystals_number 1 _exptl.entry_id 5QPC _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.080 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 51.85 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.1 M acetate, pH 4.5, 5-25% PEG3350' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp . _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.pdbx_collection_date 2017-07-27 _diffrn_detector.diffrn_id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91587 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_wavelength_list 0.91587 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5QPC _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 29.060 _reflns.d_resolution_high 1.660 _reflns.number_obs 23655 _reflns.number_all ? _reflns.percent_possible_obs 99.800 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21.400 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.500 _reflns.pdbx_Rrim_I_all 0.046 _reflns.pdbx_Rpim_I_all 0.018 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 152887 _reflns.pdbx_scaling_rejects 0 _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.660 1.710 ? 10793 ? ? 0.837 ? ? ? 6.400 ? 2.200 ? 1691 ? ? ? ? 98.300 0.911 0.357 0.821 1 2 7.430 29.060 ? 1857 ? ? 0.023 ? ? ? 5.900 ? 62.800 ? 316 ? ? ? ? 98.300 0.026 0.011 0.998 # _refine.entry_id 5QPC _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.6600 _refine.ls_d_res_low 44.8900 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7700 _refine.ls_number_reflns_obs 22456 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1988 _refine.ls_R_factor_R_work 0.1970 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2360 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_number_reflns_R_free 1150 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 31.9350 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0700 _refine.aniso_B[2][2] 0.0300 _refine.aniso_B[3][3] 0.0400 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9630 _refine.correlation_coeff_Fo_to_Fc_free 0.9350 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0950 _refine.pdbx_overall_ESU_R_Free 0.0980 _refine.overall_SU_ML 0.0660 _refine.overall_SU_B 1.9850 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 5MP0' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 77.670 _refine.B_iso_min 16.220 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.6600 _refine_hist.d_res_low 44.8900 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 1314 _refine_hist.pdbx_number_residues_total 149 _refine_hist.pdbx_B_iso_mean_ligand 49.77 _refine_hist.pdbx_B_iso_mean_solvent 43.23 _refine_hist.pdbx_number_atoms_protein 1195 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1309 0.019 0.019 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1772 1.769 1.975 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 161 5.935 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 63 30.976 22.698 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 219 14.329 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 13 17.793 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 186 0.146 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1017 0.010 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 619 2.593 2.891 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 775 3.745 4.322 ? ? 'X-RAY DIFFRACTION' r_scbond_it 690 4.001 3.287 ? ? # _refine_ls_shell.d_res_high 1.6620 _refine_ls_shell.d_res_low 1.7050 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.0800 _refine_ls_shell.number_reflns_R_work 1597 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3120 _refine_ls_shell.R_factor_R_free 0.3130 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 86 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1683 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # _struct.entry_id 5QPC _struct.title 'Crystal Structure of DCP2 (NUDT20) after initial refinement with no ligand modelled (structure $n)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5QPC _struct_keywords.text 'SGC - Diamond I04-1 fragment screening, PanDDA, XChemExplorer, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 6 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCP2_HUMAN _struct_ref.pdbx_db_accession Q8IU60 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGVPTYGAIILDETLENVLLVQGYLAKSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARL YIIPGIPKDTKFNPKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLSRRFGDSSDSDNGFS STGSTP ; _struct_ref.pdbx_align_begin 95 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5QPC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 167 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8IU60 _struct_ref_seq.db_align_beg 95 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 260 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 95 _struct_ref_seq.pdbx_auth_seq_align_end 260 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5QPC _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8IU60 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 94 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1220 ? 1 MORE 9 ? 1 'SSA (A^2)' 8820 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 25 ? SER A 29 ? TYR A 118 SER A 122 5 ? 5 HELX_P HELX_P2 AA2 ALA A 43 ? GLY A 57 ? ALA A 136 GLY A 150 1 ? 15 HELX_P HELX_P3 AA3 GLU A 110 ? LEU A 112 ? GLU A 203 LEU A 205 5 ? 3 HELX_P HELX_P4 AA4 MET A 119 ? SER A 123 ? MET A 212 SER A 216 5 ? 5 HELX_P HELX_P5 AA5 ALA A 135 ? PHE A 150 ? ALA A 228 PHE A 243 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 35 ? LYS A 37 ? LYS A 128 LYS A 130 AA1 2 THR A 6 ? ILE A 11 ? THR A 99 ILE A 104 AA1 3 LEU A 78 ? ILE A 84 ? LEU A 171 ILE A 177 AA1 4 TYR A 69 ? ARG A 73 ? TYR A 162 ARG A 166 AA2 1 TRP A 31 ? GLY A 32 ? TRP A 124 GLY A 125 AA2 2 ASN A 18 ? GLN A 23 ? ASN A 111 GLN A 116 AA2 3 ASN A 103 ? SER A 108 ? ASN A 196 SER A 201 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLY A 36 ? O GLY A 129 N TYR A 7 ? N TYR A 100 AA1 2 3 N ILE A 10 ? N ILE A 103 O ILE A 84 ? O ILE A 177 AA1 3 4 O LEU A 81 ? O LEU A 174 N ILE A 70 ? N ILE A 163 AA2 1 2 O GLY A 32 ? O GLY A 125 N VAL A 22 ? N VAL A 115 AA2 2 3 N GLN A 23 ? N GLN A 116 O ASN A 103 ? O ASN A 196 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 301 ? 5 'binding site for residue EDO A 301' AC2 Software A EDO 302 ? 5 'binding site for residue EDO A 302' AC3 Software A DMS 303 ? 2 'binding site for residue DMS A 303' AC4 Software A ACT 304 ? 3 'binding site for residue ACT A 304' AC5 Software A ACT 305 ? 5 'binding site for residue ACT A 305' AC6 Software A PEG 306 ? 8 'binding site for residue PEG A 306' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ALA A 49 ? ALA A 142 . ? 1_555 ? 2 AC1 5 ASP A 59 ? ASP A 152 . ? 1_555 ? 3 AC1 5 LYS A 61 ? LYS A 154 . ? 1_555 ? 4 AC1 5 HOH H . ? HOH A 427 . ? 1_555 ? 5 AC1 5 HOH H . ? HOH A 453 . ? 1_555 ? 6 AC2 5 PRO A 129 ? PRO A 222 . ? 1_555 ? 7 AC2 5 ASN A 130 ? ASN A 223 . ? 1_555 ? 8 AC2 5 LYS A 131 ? LYS A 224 . ? 1_555 ? 9 AC2 5 ACT F . ? ACT A 305 . ? 1_555 ? 10 AC2 5 HOH H . ? HOH A 404 . ? 1_555 ? 11 AC3 2 ASN A 18 ? ASN A 111 . ? 1_555 ? 12 AC3 2 TRP A 106 ? TRP A 199 . ? 1_555 ? 13 AC4 3 SER A 29 ? SER A 122 . ? 1_555 ? 14 AC4 3 TYR A 63 ? TYR A 156 . ? 3_357 ? 15 AC4 3 HOH H . ? HOH A 428 . ? 3_357 ? 16 AC5 5 ARG A 116 ? ARG A 209 . ? 1_555 ? 17 AC5 5 PRO A 129 ? PRO A 222 . ? 1_555 ? 18 AC5 5 ASN A 130 ? ASN A 223 . ? 1_555 ? 19 AC5 5 PHE A 133 ? PHE A 226 . ? 1_555 ? 20 AC5 5 EDO C . ? EDO A 302 . ? 1_555 ? 21 AC6 8 VAL A 22 ? VAL A 115 . ? 1_555 ? 22 AC6 8 GLY A 24 ? GLY A 117 . ? 1_555 ? 23 AC6 8 LYS A 28 ? LYS A 121 . ? 1_555 ? 24 AC6 8 GLY A 30 ? GLY A 123 . ? 1_555 ? 25 AC6 8 GLY A 32 ? GLY A 125 . ? 1_555 ? 26 AC6 8 LYS A 35 ? LYS A 128 . ? 1_555 ? 27 AC6 8 GLU A 55 ? GLU A 148 . ? 1_555 ? 28 AC6 8 MET A 134 ? MET A 227 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 152 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 152 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 152 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 125.09 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 6.79 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 119 ? ? 58.60 -118.39 2 1 THR A 190 ? A -103.54 69.99 # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 94 ? A SER 1 2 1 Y 1 A MET 95 ? A MET 2 3 1 Y 1 A ASP 245 ? A ASP 152 4 1 Y 1 A SER 246 ? A SER 153 5 1 Y 1 A SER 247 ? A SER 154 6 1 Y 1 A ASP 248 ? A ASP 155 7 1 Y 1 A SER 249 ? A SER 156 8 1 Y 1 A ASP 250 ? A ASP 157 9 1 Y 1 A ASN 251 ? A ASN 158 10 1 Y 1 A GLY 252 ? A GLY 159 11 1 Y 1 A PHE 253 ? A PHE 160 12 1 Y 1 A SER 254 ? A SER 161 13 1 Y 1 A SER 255 ? A SER 162 14 1 Y 1 A THR 256 ? A THR 163 15 1 Y 1 A GLY 257 ? A GLY 164 16 1 Y 1 A SER 258 ? A SER 165 17 1 Y 1 A THR 259 ? A THR 166 18 1 Y 1 A PRO 260 ? A PRO 167 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 CYS N N N N 81 CYS CA C N R 82 CYS C C N N 83 CYS O O N N 84 CYS CB C N N 85 CYS SG S N N 86 CYS OXT O N N 87 CYS H H N N 88 CYS H2 H N N 89 CYS HA H N N 90 CYS HB2 H N N 91 CYS HB3 H N N 92 CYS HG H N N 93 CYS HXT H N N 94 DMS S S N N 95 DMS O O N N 96 DMS C1 C N N 97 DMS C2 C N N 98 DMS H11 H N N 99 DMS H12 H N N 100 DMS H13 H N N 101 DMS H21 H N N 102 DMS H22 H N N 103 DMS H23 H N N 104 EDO C1 C N N 105 EDO O1 O N N 106 EDO C2 C N N 107 EDO O2 O N N 108 EDO H11 H N N 109 EDO H12 H N N 110 EDO HO1 H N N 111 EDO H21 H N N 112 EDO H22 H N N 113 EDO HO2 H N N 114 GLN N N N N 115 GLN CA C N S 116 GLN C C N N 117 GLN O O N N 118 GLN CB C N N 119 GLN CG C N N 120 GLN CD C N N 121 GLN OE1 O N N 122 GLN NE2 N N N 123 GLN OXT O N N 124 GLN H H N N 125 GLN H2 H N N 126 GLN HA H N N 127 GLN HB2 H N N 128 GLN HB3 H N N 129 GLN HG2 H N N 130 GLN HG3 H N N 131 GLN HE21 H N N 132 GLN HE22 H N N 133 GLN HXT H N N 134 GLU N N N N 135 GLU CA C N S 136 GLU C C N N 137 GLU O O N N 138 GLU CB C N N 139 GLU CG C N N 140 GLU CD C N N 141 GLU OE1 O N N 142 GLU OE2 O N N 143 GLU OXT O N N 144 GLU H H N N 145 GLU H2 H N N 146 GLU HA H N N 147 GLU HB2 H N N 148 GLU HB3 H N N 149 GLU HG2 H N N 150 GLU HG3 H N N 151 GLU HE2 H N N 152 GLU HXT H N N 153 GLY N N N N 154 GLY CA C N N 155 GLY C C N N 156 GLY O O N N 157 GLY OXT O N N 158 GLY H H N N 159 GLY H2 H N N 160 GLY HA2 H N N 161 GLY HA3 H N N 162 GLY HXT H N N 163 HIS N N N N 164 HIS CA C N S 165 HIS C C N N 166 HIS O O N N 167 HIS CB C N N 168 HIS CG C Y N 169 HIS ND1 N Y N 170 HIS CD2 C Y N 171 HIS CE1 C Y N 172 HIS NE2 N Y N 173 HIS OXT O N N 174 HIS H H N N 175 HIS H2 H N N 176 HIS HA H N N 177 HIS HB2 H N N 178 HIS HB3 H N N 179 HIS HD1 H N N 180 HIS HD2 H N N 181 HIS HE1 H N N 182 HIS HE2 H N N 183 HIS HXT H N N 184 HOH O O N N 185 HOH H1 H N N 186 HOH H2 H N N 187 ILE N N N N 188 ILE CA C N S 189 ILE C C N N 190 ILE O O N N 191 ILE CB C N S 192 ILE CG1 C N N 193 ILE CG2 C N N 194 ILE CD1 C N N 195 ILE OXT O N N 196 ILE H H N N 197 ILE H2 H N N 198 ILE HA H N N 199 ILE HB H N N 200 ILE HG12 H N N 201 ILE HG13 H N N 202 ILE HG21 H N N 203 ILE HG22 H N N 204 ILE HG23 H N N 205 ILE HD11 H N N 206 ILE HD12 H N N 207 ILE HD13 H N N 208 ILE HXT H N N 209 LEU N N N N 210 LEU CA C N S 211 LEU C C N N 212 LEU O O N N 213 LEU CB C N N 214 LEU CG C N N 215 LEU CD1 C N N 216 LEU CD2 C N N 217 LEU OXT O N N 218 LEU H H N N 219 LEU H2 H N N 220 LEU HA H N N 221 LEU HB2 H N N 222 LEU HB3 H N N 223 LEU HG H N N 224 LEU HD11 H N N 225 LEU HD12 H N N 226 LEU HD13 H N N 227 LEU HD21 H N N 228 LEU HD22 H N N 229 LEU HD23 H N N 230 LEU HXT H N N 231 LYS N N N N 232 LYS CA C N S 233 LYS C C N N 234 LYS O O N N 235 LYS CB C N N 236 LYS CG C N N 237 LYS CD C N N 238 LYS CE C N N 239 LYS NZ N N N 240 LYS OXT O N N 241 LYS H H N N 242 LYS H2 H N N 243 LYS HA H N N 244 LYS HB2 H N N 245 LYS HB3 H N N 246 LYS HG2 H N N 247 LYS HG3 H N N 248 LYS HD2 H N N 249 LYS HD3 H N N 250 LYS HE2 H N N 251 LYS HE3 H N N 252 LYS HZ1 H N N 253 LYS HZ2 H N N 254 LYS HZ3 H N N 255 LYS HXT H N N 256 MET N N N N 257 MET CA C N S 258 MET C C N N 259 MET O O N N 260 MET CB C N N 261 MET CG C N N 262 MET SD S N N 263 MET CE C N N 264 MET OXT O N N 265 MET H H N N 266 MET H2 H N N 267 MET HA H N N 268 MET HB2 H N N 269 MET HB3 H N N 270 MET HG2 H N N 271 MET HG3 H N N 272 MET HE1 H N N 273 MET HE2 H N N 274 MET HE3 H N N 275 MET HXT H N N 276 PEG C1 C N N 277 PEG O1 O N N 278 PEG C2 C N N 279 PEG O2 O N N 280 PEG C3 C N N 281 PEG C4 C N N 282 PEG O4 O N N 283 PEG H11 H N N 284 PEG H12 H N N 285 PEG HO1 H N N 286 PEG H21 H N N 287 PEG H22 H N N 288 PEG H31 H N N 289 PEG H32 H N N 290 PEG H41 H N N 291 PEG H42 H N N 292 PEG HO4 H N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TRP N N N N 365 TRP CA C N S 366 TRP C C N N 367 TRP O O N N 368 TRP CB C N N 369 TRP CG C Y N 370 TRP CD1 C Y N 371 TRP CD2 C Y N 372 TRP NE1 N Y N 373 TRP CE2 C Y N 374 TRP CE3 C Y N 375 TRP CZ2 C Y N 376 TRP CZ3 C Y N 377 TRP CH2 C Y N 378 TRP OXT O N N 379 TRP H H N N 380 TRP H2 H N N 381 TRP HA H N N 382 TRP HB2 H N N 383 TRP HB3 H N N 384 TRP HD1 H N N 385 TRP HE1 H N N 386 TRP HE3 H N N 387 TRP HZ2 H N N 388 TRP HZ3 H N N 389 TRP HH2 H N N 390 TRP HXT H N N 391 TYR N N N N 392 TYR CA C N S 393 TYR C C N N 394 TYR O O N N 395 TYR CB C N N 396 TYR CG C Y N 397 TYR CD1 C Y N 398 TYR CD2 C Y N 399 TYR CE1 C Y N 400 TYR CE2 C Y N 401 TYR CZ C Y N 402 TYR OH O N N 403 TYR OXT O N N 404 TYR H H N N 405 TYR H2 H N N 406 TYR HA H N N 407 TYR HB2 H N N 408 TYR HB3 H N N 409 TYR HD1 H N N 410 TYR HD2 H N N 411 TYR HE1 H N N 412 TYR HE2 H N N 413 TYR HH H N N 414 TYR HXT H N N 415 VAL N N N N 416 VAL CA C N S 417 VAL C C N N 418 VAL O O N N 419 VAL CB C N N 420 VAL CG1 C N N 421 VAL CG2 C N N 422 VAL OXT O N N 423 VAL H H N N 424 VAL H2 H N N 425 VAL HA H N N 426 VAL HB H N N 427 VAL HG11 H N N 428 VAL HG12 H N N 429 VAL HG13 H N N 430 VAL HG21 H N N 431 VAL HG22 H N N 432 VAL HG23 H N N 433 VAL HXT H N N 434 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 CYS N CA sing N N 76 CYS N H sing N N 77 CYS N H2 sing N N 78 CYS CA C sing N N 79 CYS CA CB sing N N 80 CYS CA HA sing N N 81 CYS C O doub N N 82 CYS C OXT sing N N 83 CYS CB SG sing N N 84 CYS CB HB2 sing N N 85 CYS CB HB3 sing N N 86 CYS SG HG sing N N 87 CYS OXT HXT sing N N 88 DMS S O doub N N 89 DMS S C1 sing N N 90 DMS S C2 sing N N 91 DMS C1 H11 sing N N 92 DMS C1 H12 sing N N 93 DMS C1 H13 sing N N 94 DMS C2 H21 sing N N 95 DMS C2 H22 sing N N 96 DMS C2 H23 sing N N 97 EDO C1 O1 sing N N 98 EDO C1 C2 sing N N 99 EDO C1 H11 sing N N 100 EDO C1 H12 sing N N 101 EDO O1 HO1 sing N N 102 EDO C2 O2 sing N N 103 EDO C2 H21 sing N N 104 EDO C2 H22 sing N N 105 EDO O2 HO2 sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 LEU N CA sing N N 197 LEU N H sing N N 198 LEU N H2 sing N N 199 LEU CA C sing N N 200 LEU CA CB sing N N 201 LEU CA HA sing N N 202 LEU C O doub N N 203 LEU C OXT sing N N 204 LEU CB CG sing N N 205 LEU CB HB2 sing N N 206 LEU CB HB3 sing N N 207 LEU CG CD1 sing N N 208 LEU CG CD2 sing N N 209 LEU CG HG sing N N 210 LEU CD1 HD11 sing N N 211 LEU CD1 HD12 sing N N 212 LEU CD1 HD13 sing N N 213 LEU CD2 HD21 sing N N 214 LEU CD2 HD22 sing N N 215 LEU CD2 HD23 sing N N 216 LEU OXT HXT sing N N 217 LYS N CA sing N N 218 LYS N H sing N N 219 LYS N H2 sing N N 220 LYS CA C sing N N 221 LYS CA CB sing N N 222 LYS CA HA sing N N 223 LYS C O doub N N 224 LYS C OXT sing N N 225 LYS CB CG sing N N 226 LYS CB HB2 sing N N 227 LYS CB HB3 sing N N 228 LYS CG CD sing N N 229 LYS CG HG2 sing N N 230 LYS CG HG3 sing N N 231 LYS CD CE sing N N 232 LYS CD HD2 sing N N 233 LYS CD HD3 sing N N 234 LYS CE NZ sing N N 235 LYS CE HE2 sing N N 236 LYS CE HE3 sing N N 237 LYS NZ HZ1 sing N N 238 LYS NZ HZ2 sing N N 239 LYS NZ HZ3 sing N N 240 LYS OXT HXT sing N N 241 MET N CA sing N N 242 MET N H sing N N 243 MET N H2 sing N N 244 MET CA C sing N N 245 MET CA CB sing N N 246 MET CA HA sing N N 247 MET C O doub N N 248 MET C OXT sing N N 249 MET CB CG sing N N 250 MET CB HB2 sing N N 251 MET CB HB3 sing N N 252 MET CG SD sing N N 253 MET CG HG2 sing N N 254 MET CG HG3 sing N N 255 MET SD CE sing N N 256 MET CE HE1 sing N N 257 MET CE HE2 sing N N 258 MET CE HE3 sing N N 259 MET OXT HXT sing N N 260 PEG C1 O1 sing N N 261 PEG C1 C2 sing N N 262 PEG C1 H11 sing N N 263 PEG C1 H12 sing N N 264 PEG O1 HO1 sing N N 265 PEG C2 O2 sing N N 266 PEG C2 H21 sing N N 267 PEG C2 H22 sing N N 268 PEG O2 C3 sing N N 269 PEG C3 C4 sing N N 270 PEG C3 H31 sing N N 271 PEG C3 H32 sing N N 272 PEG C4 O4 sing N N 273 PEG C4 H41 sing N N 274 PEG C4 H42 sing N N 275 PEG O4 HO4 sing N N 276 PHE N CA sing N N 277 PHE N H sing N N 278 PHE N H2 sing N N 279 PHE CA C sing N N 280 PHE CA CB sing N N 281 PHE CA HA sing N N 282 PHE C O doub N N 283 PHE C OXT sing N N 284 PHE CB CG sing N N 285 PHE CB HB2 sing N N 286 PHE CB HB3 sing N N 287 PHE CG CD1 doub Y N 288 PHE CG CD2 sing Y N 289 PHE CD1 CE1 sing Y N 290 PHE CD1 HD1 sing N N 291 PHE CD2 CE2 doub Y N 292 PHE CD2 HD2 sing N N 293 PHE CE1 CZ doub Y N 294 PHE CE1 HE1 sing N N 295 PHE CE2 CZ sing Y N 296 PHE CE2 HE2 sing N N 297 PHE CZ HZ sing N N 298 PHE OXT HXT sing N N 299 PRO N CA sing N N 300 PRO N CD sing N N 301 PRO N H sing N N 302 PRO CA C sing N N 303 PRO CA CB sing N N 304 PRO CA HA sing N N 305 PRO C O doub N N 306 PRO C OXT sing N N 307 PRO CB CG sing N N 308 PRO CB HB2 sing N N 309 PRO CB HB3 sing N N 310 PRO CG CD sing N N 311 PRO CG HG2 sing N N 312 PRO CG HG3 sing N N 313 PRO CD HD2 sing N N 314 PRO CD HD3 sing N N 315 PRO OXT HXT sing N N 316 SER N CA sing N N 317 SER N H sing N N 318 SER N H2 sing N N 319 SER CA C sing N N 320 SER CA CB sing N N 321 SER CA HA sing N N 322 SER C O doub N N 323 SER C OXT sing N N 324 SER CB OG sing N N 325 SER CB HB2 sing N N 326 SER CB HB3 sing N N 327 SER OG HG sing N N 328 SER OXT HXT sing N N 329 THR N CA sing N N 330 THR N H sing N N 331 THR N H2 sing N N 332 THR CA C sing N N 333 THR CA CB sing N N 334 THR CA HA sing N N 335 THR C O doub N N 336 THR C OXT sing N N 337 THR CB OG1 sing N N 338 THR CB CG2 sing N N 339 THR CB HB sing N N 340 THR OG1 HG1 sing N N 341 THR CG2 HG21 sing N N 342 THR CG2 HG22 sing N N 343 THR CG2 HG23 sing N N 344 THR OXT HXT sing N N 345 TRP N CA sing N N 346 TRP N H sing N N 347 TRP N H2 sing N N 348 TRP CA C sing N N 349 TRP CA CB sing N N 350 TRP CA HA sing N N 351 TRP C O doub N N 352 TRP C OXT sing N N 353 TRP CB CG sing N N 354 TRP CB HB2 sing N N 355 TRP CB HB3 sing N N 356 TRP CG CD1 doub Y N 357 TRP CG CD2 sing Y N 358 TRP CD1 NE1 sing Y N 359 TRP CD1 HD1 sing N N 360 TRP CD2 CE2 doub Y N 361 TRP CD2 CE3 sing Y N 362 TRP NE1 CE2 sing Y N 363 TRP NE1 HE1 sing N N 364 TRP CE2 CZ2 sing Y N 365 TRP CE3 CZ3 doub Y N 366 TRP CE3 HE3 sing N N 367 TRP CZ2 CH2 doub Y N 368 TRP CZ2 HZ2 sing N N 369 TRP CZ3 CH2 sing Y N 370 TRP CZ3 HZ3 sing N N 371 TRP CH2 HH2 sing N N 372 TRP OXT HXT sing N N 373 TYR N CA sing N N 374 TYR N H sing N N 375 TYR N H2 sing N N 376 TYR CA C sing N N 377 TYR CA CB sing N N 378 TYR CA HA sing N N 379 TYR C O doub N N 380 TYR C OXT sing N N 381 TYR CB CG sing N N 382 TYR CB HB2 sing N N 383 TYR CB HB3 sing N N 384 TYR CG CD1 doub Y N 385 TYR CG CD2 sing Y N 386 TYR CD1 CE1 sing Y N 387 TYR CD1 HD1 sing N N 388 TYR CD2 CE2 doub Y N 389 TYR CD2 HD2 sing N N 390 TYR CE1 CZ doub Y N 391 TYR CE1 HE1 sing N N 392 TYR CE2 CZ sing Y N 393 TYR CE2 HE2 sing N N 394 TYR CZ OH sing N N 395 TYR OH HH sing N N 396 TYR OXT HXT sing N N 397 VAL N CA sing N N 398 VAL N H sing N N 399 VAL N H2 sing N N 400 VAL CA C sing N N 401 VAL CA CB sing N N 402 VAL CA HA sing N N 403 VAL C O doub N N 404 VAL C OXT sing N N 405 VAL CB CG1 sing N N 406 VAL CB CG2 sing N N 407 VAL CB HB sing N N 408 VAL CG1 HG11 sing N N 409 VAL CG1 HG12 sing N N 410 VAL CG1 HG13 sing N N 411 VAL CG2 HG21 sing N N 412 VAL CG2 HG22 sing N N 413 VAL CG2 HG23 sing N N 414 VAL OXT HXT sing N N 415 # _pdbx_deposit_group.group_id G_1002062 _pdbx_deposit_group.group_description ;XDomainX of XOrganismX DCP2 (NUDT20) screened against the XXX Fragment Library by X-ray Crystallography at the XChem facility of Diamond Light Source beamline I04-1 ; _pdbx_deposit_group.group_title 'PanDDA analysis group deposition of ground-state model' _pdbx_deposit_group.group_type 'ground state' # _atom_sites.entry_id 5QPC _atom_sites.fract_transf_matrix[1][1] 0.020734 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016340 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015143 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_