data_5QSH # _entry.id 5QSH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5QSH pdb_00005qsh 10.2210/pdb5qsh/pdb WWPDB D_1001402350 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-08-21 2 'Structure model' 1 1 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 5QSH _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2019-05-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Newman, J.A.' 1 'Gavard, A.E.' 2 'Sherestha, L.' 3 'Burgess-Brown, N.A.' 4 'von Delft, F.' 5 'Arrowsmith, C.H.' 6 'Edwards, A.' 7 'Bountra, C.' 8 'Gileadi, O.' 9 # _citation.id primary _citation.title 'PanDDA analysis group deposition' _citation.journal_abbrev 'To Be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Newman, J.A.' ? 1 primary 'Gavard, A.E.' ? 2 primary 'Sherestha, L.' ? 3 primary 'Burgess-Brown, N.A.' ? 4 primary 'von Delft, F.' ? 5 primary 'Arrowsmith, C.H.' ? 6 primary 'Edwards, A.' ? 7 primary 'Bountra, C.' ? 8 primary 'Gileadi, O.' ? 9 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'T-box transcription factor T' 19655.623 1 ? G177D ? ? 2 non-polymer syn '1-ethyl-N-(2-fluorophenyl)piperidin-4-amine' 222.302 1 ? ? ? ? 3 water nat water 18.015 209 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Brachyury protein,Protein T' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GELRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQA PSCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQIMLNSLHKYEPRIHIVRVGDPQRMITSHCFPETQFIAVTAYQ NEEITALKIKYN ; _entity_poly.pdbx_seq_one_letter_code_can ;GELRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQA PSCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQIMLNSLHKYEPRIHIVRVGDPQRMITSHCFPETQFIAVTAYQ NEEITALKIKYN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1-ethyl-N-(2-fluorophenyl)piperidin-4-amine' NVY 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 LEU n 1 4 ARG n 1 5 VAL n 1 6 GLY n 1 7 LEU n 1 8 GLU n 1 9 GLU n 1 10 SER n 1 11 GLU n 1 12 LEU n 1 13 TRP n 1 14 LEU n 1 15 ARG n 1 16 PHE n 1 17 LYS n 1 18 GLU n 1 19 LEU n 1 20 THR n 1 21 ASN n 1 22 GLU n 1 23 MET n 1 24 ILE n 1 25 VAL n 1 26 THR n 1 27 LYS n 1 28 ASN n 1 29 GLY n 1 30 ARG n 1 31 ARG n 1 32 MET n 1 33 PHE n 1 34 PRO n 1 35 VAL n 1 36 LEU n 1 37 LYS n 1 38 VAL n 1 39 ASN n 1 40 VAL n 1 41 SER n 1 42 GLY n 1 43 LEU n 1 44 ASP n 1 45 PRO n 1 46 ASN n 1 47 ALA n 1 48 MET n 1 49 TYR n 1 50 SER n 1 51 PHE n 1 52 LEU n 1 53 LEU n 1 54 ASP n 1 55 PHE n 1 56 VAL n 1 57 ALA n 1 58 ALA n 1 59 ASP n 1 60 ASN n 1 61 HIS n 1 62 ARG n 1 63 TRP n 1 64 LYS n 1 65 TYR n 1 66 VAL n 1 67 ASN n 1 68 GLY n 1 69 GLU n 1 70 TRP n 1 71 VAL n 1 72 PRO n 1 73 GLY n 1 74 GLY n 1 75 LYS n 1 76 PRO n 1 77 GLU n 1 78 PRO n 1 79 GLN n 1 80 ALA n 1 81 PRO n 1 82 SER n 1 83 CYS n 1 84 VAL n 1 85 TYR n 1 86 ILE n 1 87 HIS n 1 88 PRO n 1 89 ASP n 1 90 SER n 1 91 PRO n 1 92 ASN n 1 93 PHE n 1 94 GLY n 1 95 ALA n 1 96 HIS n 1 97 TRP n 1 98 MET n 1 99 LYS n 1 100 ALA n 1 101 PRO n 1 102 VAL n 1 103 SER n 1 104 PHE n 1 105 SER n 1 106 LYS n 1 107 VAL n 1 108 LYS n 1 109 LEU n 1 110 THR n 1 111 ASN n 1 112 LYS n 1 113 LEU n 1 114 ASN n 1 115 GLY n 1 116 GLY n 1 117 GLY n 1 118 GLN n 1 119 ILE n 1 120 MET n 1 121 LEU n 1 122 ASN n 1 123 SER n 1 124 LEU n 1 125 HIS n 1 126 LYS n 1 127 TYR n 1 128 GLU n 1 129 PRO n 1 130 ARG n 1 131 ILE n 1 132 HIS n 1 133 ILE n 1 134 VAL n 1 135 ARG n 1 136 VAL n 1 137 GLY n 1 138 ASP n 1 139 PRO n 1 140 GLN n 1 141 ARG n 1 142 MET n 1 143 ILE n 1 144 THR n 1 145 SER n 1 146 HIS n 1 147 CYS n 1 148 PHE n 1 149 PRO n 1 150 GLU n 1 151 THR n 1 152 GLN n 1 153 PHE n 1 154 ILE n 1 155 ALA n 1 156 VAL n 1 157 THR n 1 158 ALA n 1 159 TYR n 1 160 GLN n 1 161 ASN n 1 162 GLU n 1 163 GLU n 1 164 ILE n 1 165 THR n 1 166 ALA n 1 167 LEU n 1 168 LYS n 1 169 ILE n 1 170 LYS n 1 171 TYR n 1 172 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 172 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TBXT, T' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NVY non-polymer . '1-ethyl-N-(2-fluorophenyl)piperidin-4-amine' ? 'C13 H19 F N2' 222.302 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 40 ? ? ? A . n A 1 2 GLU 2 41 41 GLU GLU A . n A 1 3 LEU 3 42 42 LEU LEU A . n A 1 4 ARG 4 43 43 ARG ARG A . n A 1 5 VAL 5 44 44 VAL VAL A . n A 1 6 GLY 6 45 45 GLY GLY A . n A 1 7 LEU 7 46 46 LEU LEU A . n A 1 8 GLU 8 47 47 GLU GLU A . n A 1 9 GLU 9 48 48 GLU GLU A . n A 1 10 SER 10 49 49 SER SER A . n A 1 11 GLU 11 50 50 GLU GLU A . n A 1 12 LEU 12 51 51 LEU LEU A . n A 1 13 TRP 13 52 52 TRP TRP A . n A 1 14 LEU 14 53 53 LEU LEU A . n A 1 15 ARG 15 54 54 ARG ARG A . n A 1 16 PHE 16 55 55 PHE PHE A . n A 1 17 LYS 17 56 56 LYS LYS A . n A 1 18 GLU 18 57 57 GLU GLU A . n A 1 19 LEU 19 58 58 LEU LEU A . n A 1 20 THR 20 59 59 THR THR A . n A 1 21 ASN 21 60 60 ASN ASN A . n A 1 22 GLU 22 61 61 GLU GLU A . n A 1 23 MET 23 62 62 MET MET A . n A 1 24 ILE 24 63 63 ILE ILE A . n A 1 25 VAL 25 64 64 VAL VAL A . n A 1 26 THR 26 65 65 THR THR A . n A 1 27 LYS 27 66 66 LYS LYS A . n A 1 28 ASN 28 67 67 ASN ASN A . n A 1 29 GLY 29 68 68 GLY GLY A . n A 1 30 ARG 30 69 69 ARG ARG A . n A 1 31 ARG 31 70 70 ARG ARG A . n A 1 32 MET 32 71 71 MET MET A . n A 1 33 PHE 33 72 72 PHE PHE A . n A 1 34 PRO 34 73 73 PRO PRO A . n A 1 35 VAL 35 74 74 VAL VAL A . n A 1 36 LEU 36 75 75 LEU LEU A . n A 1 37 LYS 37 76 76 LYS LYS A . n A 1 38 VAL 38 77 77 VAL VAL A . n A 1 39 ASN 39 78 78 ASN ASN A . n A 1 40 VAL 40 79 79 VAL VAL A . n A 1 41 SER 41 80 80 SER SER A . n A 1 42 GLY 42 81 81 GLY GLY A . n A 1 43 LEU 43 82 82 LEU LEU A . n A 1 44 ASP 44 83 83 ASP ASP A . n A 1 45 PRO 45 84 84 PRO PRO A . n A 1 46 ASN 46 85 85 ASN ASN A . n A 1 47 ALA 47 86 86 ALA ALA A . n A 1 48 MET 48 87 87 MET MET A . n A 1 49 TYR 49 88 88 TYR TYR A . n A 1 50 SER 50 89 89 SER SER A . n A 1 51 PHE 51 90 90 PHE PHE A . n A 1 52 LEU 52 91 91 LEU LEU A . n A 1 53 LEU 53 92 92 LEU LEU A . n A 1 54 ASP 54 93 93 ASP ASP A . n A 1 55 PHE 55 94 94 PHE PHE A . n A 1 56 VAL 56 95 95 VAL VAL A . n A 1 57 ALA 57 96 96 ALA ALA A . n A 1 58 ALA 58 97 97 ALA ALA A . n A 1 59 ASP 59 98 98 ASP ASP A . n A 1 60 ASN 60 99 99 ASN ASN A . n A 1 61 HIS 61 100 100 HIS HIS A . n A 1 62 ARG 62 101 101 ARG ARG A . n A 1 63 TRP 63 102 102 TRP TRP A . n A 1 64 LYS 64 103 103 LYS LYS A . n A 1 65 TYR 65 104 104 TYR TYR A . n A 1 66 VAL 66 105 105 VAL VAL A . n A 1 67 ASN 67 106 106 ASN ASN A . n A 1 68 GLY 68 107 107 GLY GLY A . n A 1 69 GLU 69 108 108 GLU GLU A . n A 1 70 TRP 70 109 109 TRP TRP A . n A 1 71 VAL 71 110 110 VAL VAL A . n A 1 72 PRO 72 111 111 PRO PRO A . n A 1 73 GLY 73 112 112 GLY GLY A . n A 1 74 GLY 74 113 113 GLY GLY A . n A 1 75 LYS 75 114 114 LYS LYS A . n A 1 76 PRO 76 115 115 PRO PRO A . n A 1 77 GLU 77 116 116 GLU GLU A . n A 1 78 PRO 78 117 117 PRO PRO A . n A 1 79 GLN 79 118 118 GLN GLN A . n A 1 80 ALA 80 119 119 ALA ALA A . n A 1 81 PRO 81 120 120 PRO PRO A . n A 1 82 SER 82 121 121 SER SER A . n A 1 83 CYS 83 122 122 CYS CYS A . n A 1 84 VAL 84 123 123 VAL VAL A . n A 1 85 TYR 85 124 124 TYR TYR A . n A 1 86 ILE 86 125 125 ILE ILE A . n A 1 87 HIS 87 126 126 HIS HIS A . n A 1 88 PRO 88 127 127 PRO PRO A . n A 1 89 ASP 89 128 128 ASP ASP A . n A 1 90 SER 90 129 129 SER SER A . n A 1 91 PRO 91 130 130 PRO PRO A . n A 1 92 ASN 92 131 131 ASN ASN A . n A 1 93 PHE 93 132 132 PHE PHE A . n A 1 94 GLY 94 133 133 GLY GLY A . n A 1 95 ALA 95 134 134 ALA ALA A . n A 1 96 HIS 96 135 135 HIS HIS A . n A 1 97 TRP 97 136 136 TRP TRP A . n A 1 98 MET 98 137 137 MET MET A . n A 1 99 LYS 99 138 138 LYS LYS A . n A 1 100 ALA 100 139 139 ALA ALA A . n A 1 101 PRO 101 140 140 PRO PRO A . n A 1 102 VAL 102 141 141 VAL VAL A . n A 1 103 SER 103 142 142 SER SER A . n A 1 104 PHE 104 143 143 PHE PHE A . n A 1 105 SER 105 144 144 SER SER A . n A 1 106 LYS 106 145 145 LYS LYS A . n A 1 107 VAL 107 146 146 VAL VAL A . n A 1 108 LYS 108 147 147 LYS LYS A . n A 1 109 LEU 109 148 148 LEU LEU A . n A 1 110 THR 110 149 149 THR THR A . n A 1 111 ASN 111 150 150 ASN ASN A . n A 1 112 LYS 112 151 151 LYS LYS A . n A 1 113 LEU 113 152 152 LEU LEU A . n A 1 114 ASN 114 153 153 ASN ASN A . n A 1 115 GLY 115 154 154 GLY GLY A . n A 1 116 GLY 116 155 155 GLY GLY A . n A 1 117 GLY 117 156 156 GLY GLY A . n A 1 118 GLN 118 157 157 GLN GLN A . n A 1 119 ILE 119 158 158 ILE ILE A . n A 1 120 MET 120 159 159 MET MET A . n A 1 121 LEU 121 160 160 LEU LEU A . n A 1 122 ASN 122 161 161 ASN ASN A . n A 1 123 SER 123 162 162 SER SER A . n A 1 124 LEU 124 163 163 LEU LEU A . n A 1 125 HIS 125 164 164 HIS HIS A . n A 1 126 LYS 126 165 165 LYS LYS A . n A 1 127 TYR 127 166 166 TYR TYR A . n A 1 128 GLU 128 167 167 GLU GLU A . n A 1 129 PRO 129 168 168 PRO PRO A . n A 1 130 ARG 130 169 169 ARG ARG A . n A 1 131 ILE 131 170 170 ILE ILE A . n A 1 132 HIS 132 171 171 HIS HIS A . n A 1 133 ILE 133 172 172 ILE ILE A . n A 1 134 VAL 134 173 173 VAL VAL A . n A 1 135 ARG 135 174 174 ARG ARG A . n A 1 136 VAL 136 175 175 VAL VAL A . n A 1 137 GLY 137 176 176 GLY GLY A . n A 1 138 ASP 138 177 177 ASP ASP A . n A 1 139 PRO 139 178 178 PRO PRO A . n A 1 140 GLN 140 179 179 GLN GLN A . n A 1 141 ARG 141 180 180 ARG ARG A . n A 1 142 MET 142 181 181 MET MET A . n A 1 143 ILE 143 182 182 ILE ILE A . n A 1 144 THR 144 183 183 THR THR A . n A 1 145 SER 145 184 184 SER SER A . n A 1 146 HIS 146 185 185 HIS HIS A . n A 1 147 CYS 147 186 186 CYS CYS A . n A 1 148 PHE 148 187 187 PHE PHE A . n A 1 149 PRO 149 188 188 PRO PRO A . n A 1 150 GLU 150 189 189 GLU GLU A . n A 1 151 THR 151 190 190 THR THR A . n A 1 152 GLN 152 191 191 GLN GLN A . n A 1 153 PHE 153 192 192 PHE PHE A . n A 1 154 ILE 154 193 193 ILE ILE A . n A 1 155 ALA 155 194 194 ALA ALA A . n A 1 156 VAL 156 195 195 VAL VAL A . n A 1 157 THR 157 196 196 THR THR A . n A 1 158 ALA 158 197 197 ALA ALA A . n A 1 159 TYR 159 198 198 TYR TYR A . n A 1 160 GLN 160 199 199 GLN GLN A . n A 1 161 ASN 161 200 200 ASN ASN A . n A 1 162 GLU 162 201 201 GLU GLU A . n A 1 163 GLU 163 202 202 GLU GLU A . n A 1 164 ILE 164 203 203 ILE ILE A . n A 1 165 THR 165 204 204 THR THR A . n A 1 166 ALA 166 205 205 ALA ALA A . n A 1 167 LEU 167 206 206 LEU LEU A . n A 1 168 LYS 168 207 207 LYS LYS A . n A 1 169 ILE 169 208 208 ILE ILE A . n A 1 170 LYS 170 209 209 LYS LYS A . n A 1 171 TYR 171 210 210 TYR TYR A . n A 1 172 ASN 172 211 211 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NVY 1 301 301 NVY LIG A . C 3 HOH 1 401 77 HOH HOH A . C 3 HOH 2 402 106 HOH HOH A . C 3 HOH 3 403 16 HOH HOH A . C 3 HOH 4 404 103 HOH HOH A . C 3 HOH 5 405 150 HOH HOH A . C 3 HOH 6 406 78 HOH HOH A . C 3 HOH 7 407 50 HOH HOH A . C 3 HOH 8 408 198 HOH HOH A . C 3 HOH 9 409 231 HOH HOH A . C 3 HOH 10 410 111 HOH HOH A . C 3 HOH 11 411 17 HOH HOH A . C 3 HOH 12 412 194 HOH HOH A . C 3 HOH 13 413 8 HOH HOH A . C 3 HOH 14 414 166 HOH HOH A . C 3 HOH 15 415 48 HOH HOH A . C 3 HOH 16 416 26 HOH HOH A . C 3 HOH 17 417 12 HOH HOH A . C 3 HOH 18 418 105 HOH HOH A . C 3 HOH 19 419 27 HOH HOH A . C 3 HOH 20 420 123 HOH HOH A . C 3 HOH 21 421 157 HOH HOH A . C 3 HOH 22 422 96 HOH HOH A . C 3 HOH 23 423 113 HOH HOH A . C 3 HOH 24 424 68 HOH HOH A . C 3 HOH 25 425 170 HOH HOH A . C 3 HOH 26 426 149 HOH HOH A . C 3 HOH 27 427 164 HOH HOH A . C 3 HOH 28 428 32 HOH HOH A . C 3 HOH 29 429 182 HOH HOH A . C 3 HOH 30 430 23 HOH HOH A . C 3 HOH 31 431 104 HOH HOH A . C 3 HOH 32 432 46 HOH HOH A . C 3 HOH 33 433 108 HOH HOH A . C 3 HOH 34 434 14 HOH HOH A . C 3 HOH 35 435 45 HOH HOH A . C 3 HOH 36 436 125 HOH HOH A . C 3 HOH 37 437 72 HOH HOH A . C 3 HOH 38 438 152 HOH HOH A . C 3 HOH 39 439 88 HOH HOH A . C 3 HOH 40 440 22 HOH HOH A . C 3 HOH 41 441 4 HOH HOH A . C 3 HOH 42 442 174 HOH HOH A . C 3 HOH 43 443 95 HOH HOH A . C 3 HOH 44 444 25 HOH HOH A . C 3 HOH 45 445 207 HOH HOH A . C 3 HOH 46 446 89 HOH HOH A . C 3 HOH 47 447 196 HOH HOH A . C 3 HOH 48 448 228 HOH HOH A . C 3 HOH 49 449 41 HOH HOH A . C 3 HOH 50 450 76 HOH HOH A . C 3 HOH 51 451 86 HOH HOH A . C 3 HOH 52 452 101 HOH HOH A . C 3 HOH 53 453 202 HOH HOH A . C 3 HOH 54 454 44 HOH HOH A . C 3 HOH 55 455 133 HOH HOH A . C 3 HOH 56 456 171 HOH HOH A . C 3 HOH 57 457 107 HOH HOH A . C 3 HOH 58 458 109 HOH HOH A . C 3 HOH 59 459 40 HOH HOH A . C 3 HOH 60 460 118 HOH HOH A . C 3 HOH 61 461 57 HOH HOH A . C 3 HOH 62 462 183 HOH HOH A . C 3 HOH 63 463 81 HOH HOH A . C 3 HOH 64 464 5 HOH HOH A . C 3 HOH 65 465 167 HOH HOH A . C 3 HOH 66 466 67 HOH HOH A . C 3 HOH 67 467 154 HOH HOH A . C 3 HOH 68 468 9 HOH HOH A . C 3 HOH 69 469 51 HOH HOH A . C 3 HOH 70 470 90 HOH HOH A . C 3 HOH 71 471 62 HOH HOH A . C 3 HOH 72 472 165 HOH HOH A . C 3 HOH 73 473 42 HOH HOH A . C 3 HOH 74 474 64 HOH HOH A . C 3 HOH 75 475 87 HOH HOH A . C 3 HOH 76 476 209 HOH HOH A . C 3 HOH 77 477 59 HOH HOH A . C 3 HOH 78 478 36 HOH HOH A . C 3 HOH 79 479 38 HOH HOH A . C 3 HOH 80 480 158 HOH HOH A . C 3 HOH 81 481 1 HOH HOH A . C 3 HOH 82 482 176 HOH HOH A . C 3 HOH 83 483 187 HOH HOH A . C 3 HOH 84 484 61 HOH HOH A . C 3 HOH 85 485 213 HOH HOH A . C 3 HOH 86 486 70 HOH HOH A . C 3 HOH 87 487 30 HOH HOH A . C 3 HOH 88 488 47 HOH HOH A . C 3 HOH 89 489 3 HOH HOH A . C 3 HOH 90 490 6 HOH HOH A . C 3 HOH 91 491 159 HOH HOH A . C 3 HOH 92 492 31 HOH HOH A . C 3 HOH 93 493 69 HOH HOH A . C 3 HOH 94 494 35 HOH HOH A . C 3 HOH 95 495 138 HOH HOH A . C 3 HOH 96 496 39 HOH HOH A . C 3 HOH 97 497 195 HOH HOH A . C 3 HOH 98 498 114 HOH HOH A . C 3 HOH 99 499 54 HOH HOH A . C 3 HOH 100 500 94 HOH HOH A . C 3 HOH 101 501 232 HOH HOH A . C 3 HOH 102 502 185 HOH HOH A . C 3 HOH 103 503 162 HOH HOH A . C 3 HOH 104 504 13 HOH HOH A . C 3 HOH 105 505 175 HOH HOH A . C 3 HOH 106 506 181 HOH HOH A . C 3 HOH 107 507 191 HOH HOH A . C 3 HOH 108 508 124 HOH HOH A . C 3 HOH 109 509 37 HOH HOH A . C 3 HOH 110 510 223 HOH HOH A . C 3 HOH 111 511 169 HOH HOH A . C 3 HOH 112 512 15 HOH HOH A . C 3 HOH 113 513 93 HOH HOH A . C 3 HOH 114 514 28 HOH HOH A . C 3 HOH 115 515 204 HOH HOH A . C 3 HOH 116 516 160 HOH HOH A . C 3 HOH 117 517 179 HOH HOH A . C 3 HOH 118 518 33 HOH HOH A . C 3 HOH 119 519 20 HOH HOH A . C 3 HOH 120 520 60 HOH HOH A . C 3 HOH 121 521 56 HOH HOH A . C 3 HOH 122 522 233 HOH HOH A . C 3 HOH 123 523 52 HOH HOH A . C 3 HOH 124 524 168 HOH HOH A . C 3 HOH 125 525 85 HOH HOH A . C 3 HOH 126 526 163 HOH HOH A . C 3 HOH 127 527 117 HOH HOH A . C 3 HOH 128 528 122 HOH HOH A . C 3 HOH 129 529 99 HOH HOH A . C 3 HOH 130 530 66 HOH HOH A . C 3 HOH 131 531 7 HOH HOH A . C 3 HOH 132 532 11 HOH HOH A . C 3 HOH 133 533 180 HOH HOH A . C 3 HOH 134 534 24 HOH HOH A . C 3 HOH 135 535 184 HOH HOH A . C 3 HOH 136 536 151 HOH HOH A . C 3 HOH 137 537 199 HOH HOH A . C 3 HOH 138 538 161 HOH HOH A . C 3 HOH 139 539 58 HOH HOH A . C 3 HOH 140 540 100 HOH HOH A . C 3 HOH 141 541 208 HOH HOH A . C 3 HOH 142 542 43 HOH HOH A . C 3 HOH 143 543 127 HOH HOH A . C 3 HOH 144 544 29 HOH HOH A . C 3 HOH 145 545 2 HOH HOH A . C 3 HOH 146 546 214 HOH HOH A . C 3 HOH 147 547 83 HOH HOH A . C 3 HOH 148 548 188 HOH HOH A . C 3 HOH 149 549 190 HOH HOH A . C 3 HOH 150 550 135 HOH HOH A . C 3 HOH 151 551 82 HOH HOH A . C 3 HOH 152 552 205 HOH HOH A . C 3 HOH 153 553 172 HOH HOH A . C 3 HOH 154 554 178 HOH HOH A . C 3 HOH 155 555 92 HOH HOH A . C 3 HOH 156 556 121 HOH HOH A . C 3 HOH 157 557 218 HOH HOH A . C 3 HOH 158 558 173 HOH HOH A . C 3 HOH 159 559 189 HOH HOH A . C 3 HOH 160 560 139 HOH HOH A . C 3 HOH 161 561 197 HOH HOH A . C 3 HOH 162 562 98 HOH HOH A . C 3 HOH 163 563 19 HOH HOH A . C 3 HOH 164 564 156 HOH HOH A . C 3 HOH 165 565 200 HOH HOH A . C 3 HOH 166 566 80 HOH HOH A . C 3 HOH 167 567 129 HOH HOH A . C 3 HOH 168 568 206 HOH HOH A . C 3 HOH 169 569 193 HOH HOH A . C 3 HOH 170 570 215 HOH HOH A . C 3 HOH 171 571 186 HOH HOH A . C 3 HOH 172 572 65 HOH HOH A . C 3 HOH 173 573 222 HOH HOH A . C 3 HOH 174 574 116 HOH HOH A . C 3 HOH 175 575 21 HOH HOH A . C 3 HOH 176 576 137 HOH HOH A . C 3 HOH 177 577 234 HOH HOH A . C 3 HOH 178 578 55 HOH HOH A . C 3 HOH 179 579 74 HOH HOH A . C 3 HOH 180 580 210 HOH HOH A . C 3 HOH 181 581 217 HOH HOH A . C 3 HOH 182 582 155 HOH HOH A . C 3 HOH 183 583 142 HOH HOH A . C 3 HOH 184 584 102 HOH HOH A . C 3 HOH 185 585 132 HOH HOH A . C 3 HOH 186 586 110 HOH HOH A . C 3 HOH 187 587 79 HOH HOH A . C 3 HOH 188 588 144 HOH HOH A . C 3 HOH 189 589 126 HOH HOH A . C 3 HOH 190 590 130 HOH HOH A . C 3 HOH 191 591 75 HOH HOH A . C 3 HOH 192 592 91 HOH HOH A . C 3 HOH 193 593 112 HOH HOH A . C 3 HOH 194 594 230 HOH HOH A . C 3 HOH 195 595 115 HOH HOH A . C 3 HOH 196 596 71 HOH HOH A . C 3 HOH 197 597 49 HOH HOH A . C 3 HOH 198 598 136 HOH HOH A . C 3 HOH 199 599 73 HOH HOH A . C 3 HOH 200 600 153 HOH HOH A . C 3 HOH 201 601 128 HOH HOH A . C 3 HOH 202 602 63 HOH HOH A . C 3 HOH 203 603 134 HOH HOH A . C 3 HOH 204 604 148 HOH HOH A . C 3 HOH 205 605 211 HOH HOH A . C 3 HOH 206 606 147 HOH HOH A . C 3 HOH 207 607 145 HOH HOH A . C 3 HOH 208 608 203 HOH HOH A . C 3 HOH 209 609 146 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.8.0238 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 Aimless 0.7.3 15/08/18 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 PDB_EXTRACT 3.23 'SEP. 23, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? program ? ? 'data reduction' ? ? ? 5 REFMAC . ? program ? ? phasing ? ? ? # _cell.entry_id 5QSH _cell.length_a 99.380 _cell.length_b 99.380 _cell.length_c 99.290 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QSH _symmetry.Int_Tables_number 155 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.crystals_number 1 _exptl.entry_id 5QSH _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.000 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 48.76 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.1 M SPG pH 7.0, 30 % PEG 1000' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2018-12-09 _diffrn_detector.diffrn_id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91587 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_wavelength_list 0.91587 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5QSH _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 42.990 _reflns.d_resolution_high 1.850 _reflns.number_obs 16263 _reflns.number_all ? _reflns.percent_possible_obs 100.000 _reflns.pdbx_Rmerge_I_obs 0.113 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.800 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.700 _reflns.pdbx_Rrim_I_all 0.119 _reflns.pdbx_Rpim_I_all 0.038 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 157965 _reflns.pdbx_scaling_rejects 784 _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.850 1.900 ? 12059 ? ? 1.654 ? ? ? 10.100 ? 1.200 ? 1191 ? ? ? ? 100.000 1.743 0.546 0.628 1 2 8.270 42.990 ? 1871 ? ? 0.039 ? ? ? 9.100 ? 49.200 ? 206 ? ? ? ? 99.300 0.041 0.013 0.999 # _refine.entry_id 5QSH _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 49.6900 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.8700 _refine.ls_number_reflns_obs 14119 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1940 _refine.ls_R_factor_R_work 0.1908 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2534 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 741 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 34.9400 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0000 _refine.aniso_B[2][2] -0.0000 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9640 _refine.correlation_coeff_Fo_to_Fc_free 0.9390 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.2010 _refine.pdbx_overall_ESU_R_Free 0.1810 _refine.overall_SU_ML 0.1590 _refine.overall_SU_B 5.9320 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 6f58 _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 108.110 _refine.B_iso_min 22.150 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 49.6900 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 209 _refine_hist.number_atoms_total 1605 _refine_hist.pdbx_number_residues_total 171 _refine_hist.pdbx_B_iso_mean_ligand 50.12 _refine_hist.pdbx_B_iso_mean_solvent 47.80 _refine_hist.pdbx_number_atoms_protein 1380 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1928 0.014 0.014 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1587 0.001 0.017 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2374 1.468 1.672 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3710 1.280 1.608 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 218 6.996 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 89 27.511 21.685 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 300 15.803 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 11 21.463 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 216 0.062 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2070 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 387 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 908 2.323 3.344 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 904 2.328 3.341 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1058 3.582 5.044 ? ? # _refine_ls_shell.d_res_high 1.9000 _refine_ls_shell.d_res_low 1.9500 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 91.7500 _refine_ls_shell.number_reflns_R_work 951 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.4970 _refine_ls_shell.R_factor_R_free 0.4870 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 72 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1023 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 5QSH _struct.title 'PanDDA analysis group deposition -- Crystal Structure of human Brachyury G177D variant in complex with Z2856434868' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5QSH _struct_keywords.text 'SGC - Diamond I04-1 fragment screening, PanDDA, XChemExplorer, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TBXT_HUMAN _struct_ref.pdbx_db_accession O15178 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ELRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQAP SCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQIMLNSLHKYEPRIHIVRVGGPQRMITSHCFPETQFIAVTAYQN EEITALKIKYN ; _struct_ref.pdbx_align_begin 41 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5QSH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 172 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O15178 _struct_ref_seq.db_align_beg 41 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 211 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 41 _struct_ref_seq.pdbx_auth_seq_align_end 211 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5QSH GLY A 1 ? UNP O15178 ? ? 'expression tag' 40 1 1 5QSH ASP A 138 ? UNP O15178 GLY 177 'engineered mutation' 177 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 9 ? GLU A 18 ? GLU A 48 GLU A 57 1 ? 10 HELX_P HELX_P2 AA2 GLY A 94 ? LYS A 99 ? GLY A 133 LYS A 138 1 ? 6 HELX_P HELX_P3 AA3 PRO A 149 ? GLN A 152 ? PRO A 188 GLN A 191 5 ? 4 HELX_P HELX_P4 AA4 ASN A 161 ? ASN A 172 ? ASN A 200 ASN A 211 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 33 A . ? PHE 72 A PRO 34 A ? PRO 73 A 1 -2.96 2 SER 90 A . ? SER 129 A PRO 91 A ? PRO 130 A 1 -13.60 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 5 ? AA3 ? 4 ? AA4 ? 3 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 4 ? LEU A 7 ? ARG A 43 LEU A 46 AA1 2 LYS A 37 ? SER A 41 ? LYS A 76 SER A 80 AA1 3 VAL A 102 ? SER A 103 ? VAL A 141 SER A 142 AA2 1 GLU A 22 ? ILE A 24 ? GLU A 61 ILE A 63 AA2 2 PHE A 153 ? VAL A 156 ? PHE A 192 VAL A 195 AA2 3 LYS A 126 ? ARG A 135 ? LYS A 165 ARG A 174 AA2 4 MET A 48 ? ALA A 57 ? MET A 87 ALA A 96 AA2 5 ASN A 92 ? PHE A 93 ? ASN A 131 PHE A 132 AA3 1 TYR A 85 ? ILE A 86 ? TYR A 124 ILE A 125 AA3 2 MET A 48 ? ALA A 57 ? MET A 87 ALA A 96 AA3 3 LYS A 126 ? ARG A 135 ? LYS A 165 ARG A 174 AA3 4 ILE A 143 ? CYS A 147 ? ILE A 182 CYS A 186 AA4 1 ARG A 30 ? ARG A 31 ? ARG A 69 ARG A 70 AA4 2 LYS A 108 ? THR A 110 ? LYS A 147 THR A 149 AA4 3 ILE A 119 ? MET A 120 ? ILE A 158 MET A 159 AA5 1 ARG A 62 ? VAL A 66 ? ARG A 101 VAL A 105 AA5 2 GLU A 69 ? GLY A 74 ? GLU A 108 GLY A 113 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 4 ? N ARG A 43 O SER A 41 ? O SER A 80 AA1 2 3 N VAL A 38 ? N VAL A 77 O VAL A 102 ? O VAL A 141 AA2 1 2 N MET A 23 ? N MET A 62 O VAL A 156 ? O VAL A 195 AA2 2 3 O PHE A 153 ? O PHE A 192 N TYR A 127 ? N TYR A 166 AA2 3 4 O HIS A 132 ? O HIS A 171 N LEU A 52 ? N LEU A 91 AA2 4 5 N TYR A 49 ? N TYR A 88 O ASN A 92 ? O ASN A 131 AA3 1 2 O TYR A 85 ? O TYR A 124 N LEU A 53 ? N LEU A 92 AA3 2 3 N LEU A 52 ? N LEU A 91 O HIS A 132 ? O HIS A 171 AA3 3 4 N ILE A 131 ? N ILE A 170 O HIS A 146 ? O HIS A 185 AA4 1 2 N ARG A 30 ? N ARG A 69 O LEU A 109 ? O LEU A 148 AA4 2 3 N THR A 110 ? N THR A 149 O ILE A 119 ? O ILE A 158 AA5 1 2 N LYS A 64 ? N LYS A 103 O VAL A 71 ? O VAL A 110 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NVY _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'binding site for residue NVY A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU A 9 ? GLU A 48 . ? 1_555 ? 2 AC1 5 GLU A 9 ? GLU A 48 . ? 4_555 ? 3 AC1 5 GLU A 11 ? GLU A 50 . ? 1_555 ? 4 AC1 5 LEU A 12 ? LEU A 51 . ? 1_555 ? 5 AC1 5 TYR A 171 ? TYR A 210 . ? 4_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 43 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 401 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 59 ? ? 75.99 117.90 2 1 ASN A 99 ? ? -99.03 36.70 3 1 SER A 121 ? ? -62.01 82.20 4 1 PHE A 143 ? ? -97.88 50.92 5 1 PHE A 143 ? ? -95.94 50.92 6 1 LEU A 152 ? ? -60.92 90.28 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NVY 301 ? B NVY . 2 1 A NVY 301 ? B NVY . 3 1 A HOH 487 ? C HOH . # _phasing.method MR # _pdbx_entry_details.entry_id 5QSH _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 606 ? 6.29 . 2 1 O ? A HOH 607 ? 6.68 . 3 1 O ? A HOH 608 ? 7.11 . 4 1 O ? A HOH 609 ? 7.74 . # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 40 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 NVY N1 N N N 250 NVY C4 C N N 251 NVY C5 C N N 252 NVY C6 C N N 253 NVY C7 C N N 254 NVY C8 C Y N 255 NVY C10 C Y N 256 NVY C13 C Y N 257 NVY C1 C N N 258 NVY C11 C Y N 259 NVY C12 C Y N 260 NVY C2 C N N 261 NVY C3 C N N 262 NVY C9 C Y N 263 NVY F1 F N N 264 NVY N2 N N N 265 NVY H2 H N N 266 NVY H3 H N N 267 NVY H4 H N N 268 NVY H5 H N N 269 NVY H6 H N N 270 NVY H7 H N N 271 NVY H8 H N N 272 NVY H9 H N N 273 NVY H10 H N N 274 NVY H11 H N N 275 NVY H12 H N N 276 NVY H13 H N N 277 NVY H14 H N N 278 NVY H15 H N N 279 NVY H16 H N N 280 NVY H17 H N N 281 NVY H18 H N N 282 NVY H19 H N N 283 NVY H20 H N N 284 PHE N N N N 285 PHE CA C N S 286 PHE C C N N 287 PHE O O N N 288 PHE CB C N N 289 PHE CG C Y N 290 PHE CD1 C Y N 291 PHE CD2 C Y N 292 PHE CE1 C Y N 293 PHE CE2 C Y N 294 PHE CZ C Y N 295 PHE OXT O N N 296 PHE H H N N 297 PHE H2 H N N 298 PHE HA H N N 299 PHE HB2 H N N 300 PHE HB3 H N N 301 PHE HD1 H N N 302 PHE HD2 H N N 303 PHE HE1 H N N 304 PHE HE2 H N N 305 PHE HZ H N N 306 PHE HXT H N N 307 PRO N N N N 308 PRO CA C N S 309 PRO C C N N 310 PRO O O N N 311 PRO CB C N N 312 PRO CG C N N 313 PRO CD C N N 314 PRO OXT O N N 315 PRO H H N N 316 PRO HA H N N 317 PRO HB2 H N N 318 PRO HB3 H N N 319 PRO HG2 H N N 320 PRO HG3 H N N 321 PRO HD2 H N N 322 PRO HD3 H N N 323 PRO HXT H N N 324 SER N N N N 325 SER CA C N S 326 SER C C N N 327 SER O O N N 328 SER CB C N N 329 SER OG O N N 330 SER OXT O N N 331 SER H H N N 332 SER H2 H N N 333 SER HA H N N 334 SER HB2 H N N 335 SER HB3 H N N 336 SER HG H N N 337 SER HXT H N N 338 THR N N N N 339 THR CA C N S 340 THR C C N N 341 THR O O N N 342 THR CB C N R 343 THR OG1 O N N 344 THR CG2 C N N 345 THR OXT O N N 346 THR H H N N 347 THR H2 H N N 348 THR HA H N N 349 THR HB H N N 350 THR HG1 H N N 351 THR HG21 H N N 352 THR HG22 H N N 353 THR HG23 H N N 354 THR HXT H N N 355 TRP N N N N 356 TRP CA C N S 357 TRP C C N N 358 TRP O O N N 359 TRP CB C N N 360 TRP CG C Y N 361 TRP CD1 C Y N 362 TRP CD2 C Y N 363 TRP NE1 N Y N 364 TRP CE2 C Y N 365 TRP CE3 C Y N 366 TRP CZ2 C Y N 367 TRP CZ3 C Y N 368 TRP CH2 C Y N 369 TRP OXT O N N 370 TRP H H N N 371 TRP H2 H N N 372 TRP HA H N N 373 TRP HB2 H N N 374 TRP HB3 H N N 375 TRP HD1 H N N 376 TRP HE1 H N N 377 TRP HE3 H N N 378 TRP HZ2 H N N 379 TRP HZ3 H N N 380 TRP HH2 H N N 381 TRP HXT H N N 382 TYR N N N N 383 TYR CA C N S 384 TYR C C N N 385 TYR O O N N 386 TYR CB C N N 387 TYR CG C Y N 388 TYR CD1 C Y N 389 TYR CD2 C Y N 390 TYR CE1 C Y N 391 TYR CE2 C Y N 392 TYR CZ C Y N 393 TYR OH O N N 394 TYR OXT O N N 395 TYR H H N N 396 TYR H2 H N N 397 TYR HA H N N 398 TYR HB2 H N N 399 TYR HB3 H N N 400 TYR HD1 H N N 401 TYR HD2 H N N 402 TYR HE1 H N N 403 TYR HE2 H N N 404 TYR HH H N N 405 TYR HXT H N N 406 VAL N N N N 407 VAL CA C N S 408 VAL C C N N 409 VAL O O N N 410 VAL CB C N N 411 VAL CG1 C N N 412 VAL CG2 C N N 413 VAL OXT O N N 414 VAL H H N N 415 VAL H2 H N N 416 VAL HA H N N 417 VAL HB H N N 418 VAL HG11 H N N 419 VAL HG12 H N N 420 VAL HG13 H N N 421 VAL HG21 H N N 422 VAL HG22 H N N 423 VAL HG23 H N N 424 VAL HXT H N N 425 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 NVY F1 C13 sing N N 237 NVY C12 C13 doub Y N 238 NVY C12 C11 sing Y N 239 NVY C13 C8 sing Y N 240 NVY C11 C10 doub Y N 241 NVY C8 N2 sing N N 242 NVY C8 C9 doub Y N 243 NVY C10 C9 sing Y N 244 NVY N2 C5 sing N N 245 NVY C5 C4 sing N N 246 NVY C5 C6 sing N N 247 NVY C4 C3 sing N N 248 NVY C6 C7 sing N N 249 NVY C3 N1 sing N N 250 NVY N1 C7 sing N N 251 NVY N1 C2 sing N N 252 NVY C2 C1 sing N N 253 NVY C4 H2 sing N N 254 NVY C4 H3 sing N N 255 NVY C5 H4 sing N N 256 NVY C6 H5 sing N N 257 NVY C6 H6 sing N N 258 NVY C7 H7 sing N N 259 NVY C7 H8 sing N N 260 NVY C10 H9 sing N N 261 NVY C1 H10 sing N N 262 NVY C1 H11 sing N N 263 NVY C1 H12 sing N N 264 NVY C11 H13 sing N N 265 NVY C12 H14 sing N N 266 NVY C2 H15 sing N N 267 NVY C2 H16 sing N N 268 NVY C3 H17 sing N N 269 NVY C3 H18 sing N N 270 NVY C9 H19 sing N N 271 NVY N2 H20 sing N N 272 PHE N CA sing N N 273 PHE N H sing N N 274 PHE N H2 sing N N 275 PHE CA C sing N N 276 PHE CA CB sing N N 277 PHE CA HA sing N N 278 PHE C O doub N N 279 PHE C OXT sing N N 280 PHE CB CG sing N N 281 PHE CB HB2 sing N N 282 PHE CB HB3 sing N N 283 PHE CG CD1 doub Y N 284 PHE CG CD2 sing Y N 285 PHE CD1 CE1 sing Y N 286 PHE CD1 HD1 sing N N 287 PHE CD2 CE2 doub Y N 288 PHE CD2 HD2 sing N N 289 PHE CE1 CZ doub Y N 290 PHE CE1 HE1 sing N N 291 PHE CE2 CZ sing Y N 292 PHE CE2 HE2 sing N N 293 PHE CZ HZ sing N N 294 PHE OXT HXT sing N N 295 PRO N CA sing N N 296 PRO N CD sing N N 297 PRO N H sing N N 298 PRO CA C sing N N 299 PRO CA CB sing N N 300 PRO CA HA sing N N 301 PRO C O doub N N 302 PRO C OXT sing N N 303 PRO CB CG sing N N 304 PRO CB HB2 sing N N 305 PRO CB HB3 sing N N 306 PRO CG CD sing N N 307 PRO CG HG2 sing N N 308 PRO CG HG3 sing N N 309 PRO CD HD2 sing N N 310 PRO CD HD3 sing N N 311 PRO OXT HXT sing N N 312 SER N CA sing N N 313 SER N H sing N N 314 SER N H2 sing N N 315 SER CA C sing N N 316 SER CA CB sing N N 317 SER CA HA sing N N 318 SER C O doub N N 319 SER C OXT sing N N 320 SER CB OG sing N N 321 SER CB HB2 sing N N 322 SER CB HB3 sing N N 323 SER OG HG sing N N 324 SER OXT HXT sing N N 325 THR N CA sing N N 326 THR N H sing N N 327 THR N H2 sing N N 328 THR CA C sing N N 329 THR CA CB sing N N 330 THR CA HA sing N N 331 THR C O doub N N 332 THR C OXT sing N N 333 THR CB OG1 sing N N 334 THR CB CG2 sing N N 335 THR CB HB sing N N 336 THR OG1 HG1 sing N N 337 THR CG2 HG21 sing N N 338 THR CG2 HG22 sing N N 339 THR CG2 HG23 sing N N 340 THR OXT HXT sing N N 341 TRP N CA sing N N 342 TRP N H sing N N 343 TRP N H2 sing N N 344 TRP CA C sing N N 345 TRP CA CB sing N N 346 TRP CA HA sing N N 347 TRP C O doub N N 348 TRP C OXT sing N N 349 TRP CB CG sing N N 350 TRP CB HB2 sing N N 351 TRP CB HB3 sing N N 352 TRP CG CD1 doub Y N 353 TRP CG CD2 sing Y N 354 TRP CD1 NE1 sing Y N 355 TRP CD1 HD1 sing N N 356 TRP CD2 CE2 doub Y N 357 TRP CD2 CE3 sing Y N 358 TRP NE1 CE2 sing Y N 359 TRP NE1 HE1 sing N N 360 TRP CE2 CZ2 sing Y N 361 TRP CE3 CZ3 doub Y N 362 TRP CE3 HE3 sing N N 363 TRP CZ2 CH2 doub Y N 364 TRP CZ2 HZ2 sing N N 365 TRP CZ3 CH2 sing Y N 366 TRP CZ3 HZ3 sing N N 367 TRP CH2 HH2 sing N N 368 TRP OXT HXT sing N N 369 TYR N CA sing N N 370 TYR N H sing N N 371 TYR N H2 sing N N 372 TYR CA C sing N N 373 TYR CA CB sing N N 374 TYR CA HA sing N N 375 TYR C O doub N N 376 TYR C OXT sing N N 377 TYR CB CG sing N N 378 TYR CB HB2 sing N N 379 TYR CB HB3 sing N N 380 TYR CG CD1 doub Y N 381 TYR CG CD2 sing Y N 382 TYR CD1 CE1 sing Y N 383 TYR CD1 HD1 sing N N 384 TYR CD2 CE2 doub Y N 385 TYR CD2 HD2 sing N N 386 TYR CE1 CZ doub Y N 387 TYR CE1 HE1 sing N N 388 TYR CE2 CZ sing Y N 389 TYR CE2 HE2 sing N N 390 TYR CZ OH sing N N 391 TYR OH HH sing N N 392 TYR OXT HXT sing N N 393 VAL N CA sing N N 394 VAL N H sing N N 395 VAL N H2 sing N N 396 VAL CA C sing N N 397 VAL CA CB sing N N 398 VAL CA HA sing N N 399 VAL C O doub N N 400 VAL C OXT sing N N 401 VAL CB CG1 sing N N 402 VAL CB CG2 sing N N 403 VAL CB HB sing N N 404 VAL CG1 HG11 sing N N 405 VAL CG1 HG12 sing N N 406 VAL CG1 HG13 sing N N 407 VAL CG2 HG21 sing N N 408 VAL CG2 HG22 sing N N 409 VAL CG2 HG23 sing N N 410 VAL OXT HXT sing N N 411 # _pdbx_deposit_group.group_id G_1002081 _pdbx_deposit_group.group_description ;Human Brachyury G177D variant screened against the DSI-poised Fragment Library by X-ray Crystallography at the XChem facility of Diamond Light Source beamline I04-1 ; _pdbx_deposit_group.group_title 'PanDDA analysis group deposition' _pdbx_deposit_group.group_type 'changed state' # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NVY _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NVY _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 5QSH _atom_sites.fract_transf_matrix[1][1] 0.010062 _atom_sites.fract_transf_matrix[1][2] 0.005810 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011619 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010072 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C F N O S # loop_