data_5QU1 # _entry.id 5QU1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5QU1 pdb_00005qu1 10.2210/pdb5qu1/pdb WWPDB D_1001402406 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-02-12 2 'Structure model' 1 1 2021-05-12 3 'Structure model' 1 2 2021-06-30 4 'Structure model' 1 3 2024-03-06 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_deposit_group 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 5 'Structure model' citation 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_deposit_group.group_description' 2 2 'Structure model' '_pdbx_deposit_group.group_type' 3 3 'Structure model' '_citation.country' 4 3 'Structure model' '_citation.journal_abbrev' 5 3 'Structure model' '_citation.journal_id_ASTM' 6 3 'Structure model' '_citation.journal_id_CSD' 7 3 'Structure model' '_citation.journal_id_ISSN' 8 3 'Structure model' '_citation.journal_volume' 9 3 'Structure model' '_citation.page_first' 10 3 'Structure model' '_citation.page_last' 11 3 'Structure model' '_citation.pdbx_database_id_DOI' 12 3 'Structure model' '_citation.pdbx_database_id_PubMed' 13 3 'Structure model' '_citation.title' 14 3 'Structure model' '_citation.year' 15 4 'Structure model' '_database_2.pdbx_DOI' 16 4 'Structure model' '_database_2.pdbx_database_accession' 17 5 'Structure model' '_citation.title' # _pdbx_database_status.entry_id 5QU1 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2019-12-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.pdbx_ordinal _audit_author.name _audit_author.identifier_ORCID 1 'Burger, D.' ? 2 'Ruf, A.' ? 3 'Benz, J.' ? 4 'Schlatter, D.' ? 5 'Rudolph, M.G.' ? # _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.title ;Small molecule AX-024 reduces T cell proliferation independently of CD3ε/Nck1 interaction, which is governed by a domain swap in the Nck1-SH3.1 domain. ; _citation.year 2020 _citation.journal_volume 295 _citation.page_first 7849 _citation.page_last 7864 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 1083-351X _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 32317279 _citation.pdbx_database_id_DOI 10.1074/jbc.RA120.012788 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Richter, K.' 1 ? primary 'Rufer, A.C.' 2 ? primary 'Muller, M.' 3 ? primary 'Burger, D.' 4 ? primary 'Casagrande, F.' 5 ? primary 'Grossenbacher, T.' 6 ? primary 'Huber, S.' 7 ? primary 'Hug, M.N.' 8 ? primary 'Koldewey, P.' 9 0000-0003-3945-1063 primary ;D'Osualdo, A. ; 10 ? primary 'Schlatter, D.' 11 ? primary 'Stoll, T.' 12 ? primary 'Rudolph, M.G.' 13 0000-0003-0447-1101 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cytoplasmic protein NCK1' 9766.842 2 ? ? 'SH3 1' ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 132 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NCK adaptor protein 1,Nck-1,SH2/SH3 adaptor protein NCK-alpha' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SGGLNDIFEAQKIEWHEGSENLYFQSEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVE RK ; _entity_poly.pdbx_seq_one_letter_code_can ;SGGLNDIFEAQKIEWHEGSENLYFQSEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVE RK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLY n 1 3 GLY n 1 4 LEU n 1 5 ASN n 1 6 ASP n 1 7 ILE n 1 8 PHE n 1 9 GLU n 1 10 ALA n 1 11 GLN n 1 12 LYS n 1 13 ILE n 1 14 GLU n 1 15 TRP n 1 16 HIS n 1 17 GLU n 1 18 GLY n 1 19 SER n 1 20 GLU n 1 21 ASN n 1 22 LEU n 1 23 TYR n 1 24 PHE n 1 25 GLN n 1 26 SER n 1 27 GLU n 1 28 VAL n 1 29 VAL n 1 30 VAL n 1 31 VAL n 1 32 ALA n 1 33 LYS n 1 34 PHE n 1 35 ASP n 1 36 TYR n 1 37 VAL n 1 38 ALA n 1 39 GLN n 1 40 GLN n 1 41 GLU n 1 42 GLN n 1 43 GLU n 1 44 LEU n 1 45 ASP n 1 46 ILE n 1 47 LYS n 1 48 LYS n 1 49 ASN n 1 50 GLU n 1 51 ARG n 1 52 LEU n 1 53 TRP n 1 54 LEU n 1 55 LEU n 1 56 ASP n 1 57 ASP n 1 58 SER n 1 59 LYS n 1 60 SER n 1 61 TRP n 1 62 TRP n 1 63 ARG n 1 64 VAL n 1 65 ARG n 1 66 ASN n 1 67 SER n 1 68 MET n 1 69 ASN n 1 70 LYS n 1 71 THR n 1 72 GLY n 1 73 PHE n 1 74 VAL n 1 75 PRO n 1 76 SER n 1 77 ASN n 1 78 TYR n 1 79 VAL n 1 80 GLU n 1 81 ARG n 1 82 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 82 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NCK1, NCK' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET28a(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -24 ? ? ? A . n A 1 2 GLY 2 -23 ? ? ? A . n A 1 3 GLY 3 -22 ? ? ? A . n A 1 4 LEU 4 -21 ? ? ? A . n A 1 5 ASN 5 -20 ? ? ? A . n A 1 6 ASP 6 -19 ? ? ? A . n A 1 7 ILE 7 -18 ? ? ? A . n A 1 8 PHE 8 -17 ? ? ? A . n A 1 9 GLU 9 -16 ? ? ? A . n A 1 10 ALA 10 -15 ? ? ? A . n A 1 11 GLN 11 -14 ? ? ? A . n A 1 12 LYS 12 -13 ? ? ? A . n A 1 13 ILE 13 -12 ? ? ? A . n A 1 14 GLU 14 -11 ? ? ? A . n A 1 15 TRP 15 -10 ? ? ? A . n A 1 16 HIS 16 -9 ? ? ? A . n A 1 17 GLU 17 -8 ? ? ? A . n A 1 18 GLY 18 -7 ? ? ? A . n A 1 19 SER 19 -6 ? ? ? A . n A 1 20 GLU 20 -5 ? ? ? A . n A 1 21 ASN 21 -4 ? ? ? A . n A 1 22 LEU 22 -3 ? ? ? A . n A 1 23 TYR 23 -2 ? ? ? A . n A 1 24 PHE 24 -1 ? ? ? A . n A 1 25 GLN 25 0 ? ? ? A . n A 1 26 SER 26 1 ? ? ? A . n A 1 27 GLU 27 2 2 GLU GLU A . n A 1 28 VAL 28 3 3 VAL VAL A . n A 1 29 VAL 29 4 4 VAL VAL A . n A 1 30 VAL 30 5 5 VAL VAL A . n A 1 31 VAL 31 6 6 VAL VAL A . n A 1 32 ALA 32 7 7 ALA ALA A . n A 1 33 LYS 33 8 8 LYS LYS A . n A 1 34 PHE 34 9 9 PHE PHE A . n A 1 35 ASP 35 10 10 ASP ASP A . n A 1 36 TYR 36 11 11 TYR TYR A . n A 1 37 VAL 37 12 12 VAL VAL A . n A 1 38 ALA 38 13 13 ALA ALA A . n A 1 39 GLN 39 14 14 GLN GLN A . n A 1 40 GLN 40 15 15 GLN GLN A . n A 1 41 GLU 41 16 16 GLU GLU A . n A 1 42 GLN 42 17 17 GLN GLN A . n A 1 43 GLU 43 18 18 GLU GLU A . n A 1 44 LEU 44 19 19 LEU LEU A . n A 1 45 ASP 45 20 20 ASP ASP A . n A 1 46 ILE 46 21 21 ILE ILE A . n A 1 47 LYS 47 22 22 LYS LYS A . n A 1 48 LYS 48 23 23 LYS LYS A . n A 1 49 ASN 49 24 24 ASN ASN A . n A 1 50 GLU 50 25 25 GLU GLU A . n A 1 51 ARG 51 26 26 ARG ARG A . n A 1 52 LEU 52 27 27 LEU LEU A . n A 1 53 TRP 53 28 28 TRP TRP A . n A 1 54 LEU 54 29 29 LEU LEU A . n A 1 55 LEU 55 30 30 LEU LEU A . n A 1 56 ASP 56 31 31 ASP ASP A . n A 1 57 ASP 57 32 32 ASP ASP A . n A 1 58 SER 58 33 33 SER SER A . n A 1 59 LYS 59 34 34 LYS LYS A . n A 1 60 SER 60 35 35 SER SER A . n A 1 61 TRP 61 36 36 TRP TRP A . n A 1 62 TRP 62 37 37 TRP TRP A . n A 1 63 ARG 63 38 38 ARG ARG A . n A 1 64 VAL 64 39 39 VAL VAL A . n A 1 65 ARG 65 40 40 ARG ARG A . n A 1 66 ASN 66 41 41 ASN ASN A . n A 1 67 SER 67 42 42 SER SER A . n A 1 68 MET 68 43 43 MET MET A . n A 1 69 ASN 69 44 44 ASN ASN A . n A 1 70 LYS 70 45 45 LYS LYS A . n A 1 71 THR 71 46 46 THR THR A . n A 1 72 GLY 72 47 47 GLY GLY A . n A 1 73 PHE 73 48 48 PHE PHE A . n A 1 74 VAL 74 49 49 VAL VAL A . n A 1 75 PRO 75 50 50 PRO PRO A . n A 1 76 SER 76 51 51 SER SER A . n A 1 77 ASN 77 52 52 ASN ASN A . n A 1 78 TYR 78 53 53 TYR TYR A . n A 1 79 VAL 79 54 54 VAL VAL A . n A 1 80 GLU 80 55 55 GLU GLU A . n A 1 81 ARG 81 56 56 ARG ARG A . n A 1 82 LYS 82 57 57 LYS LYS A . n B 1 1 SER 1 -24 ? ? ? B . n B 1 2 GLY 2 -23 ? ? ? B . n B 1 3 GLY 3 -22 ? ? ? B . n B 1 4 LEU 4 -21 ? ? ? B . n B 1 5 ASN 5 -20 ? ? ? B . n B 1 6 ASP 6 -19 ? ? ? B . n B 1 7 ILE 7 -18 ? ? ? B . n B 1 8 PHE 8 -17 ? ? ? B . n B 1 9 GLU 9 -16 ? ? ? B . n B 1 10 ALA 10 -15 ? ? ? B . n B 1 11 GLN 11 -14 ? ? ? B . n B 1 12 LYS 12 -13 ? ? ? B . n B 1 13 ILE 13 -12 ? ? ? B . n B 1 14 GLU 14 -11 ? ? ? B . n B 1 15 TRP 15 -10 ? ? ? B . n B 1 16 HIS 16 -9 ? ? ? B . n B 1 17 GLU 17 -8 ? ? ? B . n B 1 18 GLY 18 -7 ? ? ? B . n B 1 19 SER 19 -6 ? ? ? B . n B 1 20 GLU 20 -5 ? ? ? B . n B 1 21 ASN 21 -4 ? ? ? B . n B 1 22 LEU 22 -3 ? ? ? B . n B 1 23 TYR 23 -2 ? ? ? B . n B 1 24 PHE 24 -1 ? ? ? B . n B 1 25 GLN 25 0 ? ? ? B . n B 1 26 SER 26 1 ? ? ? B . n B 1 27 GLU 27 2 2 GLU GLU B . n B 1 28 VAL 28 3 3 VAL VAL B . n B 1 29 VAL 29 4 4 VAL VAL B . n B 1 30 VAL 30 5 5 VAL VAL B . n B 1 31 VAL 31 6 6 VAL VAL B . n B 1 32 ALA 32 7 7 ALA ALA B . n B 1 33 LYS 33 8 8 LYS LYS B . n B 1 34 PHE 34 9 9 PHE PHE B . n B 1 35 ASP 35 10 10 ASP ASP B . n B 1 36 TYR 36 11 11 TYR TYR B . n B 1 37 VAL 37 12 12 VAL VAL B . n B 1 38 ALA 38 13 13 ALA ALA B . n B 1 39 GLN 39 14 14 GLN GLN B . n B 1 40 GLN 40 15 15 GLN GLN B . n B 1 41 GLU 41 16 16 GLU GLU B . n B 1 42 GLN 42 17 17 GLN GLN B . n B 1 43 GLU 43 18 18 GLU GLU B . n B 1 44 LEU 44 19 19 LEU LEU B . n B 1 45 ASP 45 20 20 ASP ASP B . n B 1 46 ILE 46 21 21 ILE ILE B . n B 1 47 LYS 47 22 22 LYS LYS B . n B 1 48 LYS 48 23 23 LYS LYS B . n B 1 49 ASN 49 24 24 ASN ASN B . n B 1 50 GLU 50 25 25 GLU GLU B . n B 1 51 ARG 51 26 26 ARG ARG B . n B 1 52 LEU 52 27 27 LEU LEU B . n B 1 53 TRP 53 28 28 TRP TRP B . n B 1 54 LEU 54 29 29 LEU LEU B . n B 1 55 LEU 55 30 30 LEU LEU B . n B 1 56 ASP 56 31 31 ASP ASP B . n B 1 57 ASP 57 32 32 ASP ASP B . n B 1 58 SER 58 33 33 SER SER B . n B 1 59 LYS 59 34 34 LYS LYS B . n B 1 60 SER 60 35 35 SER SER B . n B 1 61 TRP 61 36 36 TRP TRP B . n B 1 62 TRP 62 37 37 TRP TRP B . n B 1 63 ARG 63 38 38 ARG ARG B . n B 1 64 VAL 64 39 39 VAL VAL B . n B 1 65 ARG 65 40 40 ARG ARG B . n B 1 66 ASN 66 41 41 ASN ASN B . n B 1 67 SER 67 42 42 SER SER B . n B 1 68 MET 68 43 43 MET MET B . n B 1 69 ASN 69 44 44 ASN ASN B . n B 1 70 LYS 70 45 45 LYS LYS B . n B 1 71 THR 71 46 46 THR THR B . n B 1 72 GLY 72 47 47 GLY GLY B . n B 1 73 PHE 73 48 48 PHE PHE B . n B 1 74 VAL 74 49 49 VAL VAL B . n B 1 75 PRO 75 50 50 PRO PRO B . n B 1 76 SER 76 51 51 SER SER B . n B 1 77 ASN 77 52 52 ASN ASN B . n B 1 78 TYR 78 53 53 TYR TYR B . n B 1 79 VAL 79 54 54 VAL VAL B . n B 1 80 GLU 80 55 55 GLU GLU B . n B 1 81 ARG 81 56 56 ARG ARG B . n B 1 82 LYS 82 57 57 LYS LYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 101 1 SO4 SO4 A . D 2 SO4 1 101 2 SO4 SO4 B . E 3 HOH 1 201 121 HOH HOH A . E 3 HOH 2 202 120 HOH HOH A . E 3 HOH 3 203 123 HOH HOH A . E 3 HOH 4 204 80 HOH HOH A . E 3 HOH 5 205 115 HOH HOH A . E 3 HOH 6 206 43 HOH HOH A . E 3 HOH 7 207 83 HOH HOH A . E 3 HOH 8 208 53 HOH HOH A . E 3 HOH 9 209 74 HOH HOH A . E 3 HOH 10 210 50 HOH HOH A . E 3 HOH 11 211 57 HOH HOH A . E 3 HOH 12 212 46 HOH HOH A . E 3 HOH 13 213 66 HOH HOH A . E 3 HOH 14 214 52 HOH HOH A . E 3 HOH 15 215 4 HOH HOH A . E 3 HOH 16 216 67 HOH HOH A . E 3 HOH 17 217 89 HOH HOH A . E 3 HOH 18 218 15 HOH HOH A . E 3 HOH 19 219 114 HOH HOH A . E 3 HOH 20 220 39 HOH HOH A . E 3 HOH 21 221 45 HOH HOH A . E 3 HOH 22 222 12 HOH HOH A . E 3 HOH 23 223 119 HOH HOH A . E 3 HOH 24 224 2 HOH HOH A . E 3 HOH 25 225 17 HOH HOH A . E 3 HOH 26 226 14 HOH HOH A . E 3 HOH 27 227 37 HOH HOH A . E 3 HOH 28 228 3 HOH HOH A . E 3 HOH 29 229 111 HOH HOH A . E 3 HOH 30 230 113 HOH HOH A . E 3 HOH 31 231 110 HOH HOH A . E 3 HOH 32 232 42 HOH HOH A . E 3 HOH 33 233 76 HOH HOH A . E 3 HOH 34 234 19 HOH HOH A . E 3 HOH 35 235 135 HOH HOH A . E 3 HOH 36 236 20 HOH HOH A . E 3 HOH 37 237 99 HOH HOH A . E 3 HOH 38 238 24 HOH HOH A . E 3 HOH 39 239 44 HOH HOH A . E 3 HOH 40 240 72 HOH HOH A . E 3 HOH 41 241 112 HOH HOH A . E 3 HOH 42 242 95 HOH HOH A . E 3 HOH 43 243 28 HOH HOH A . E 3 HOH 44 244 7 HOH HOH A . E 3 HOH 45 245 13 HOH HOH A . E 3 HOH 46 246 59 HOH HOH A . E 3 HOH 47 247 49 HOH HOH A . E 3 HOH 48 248 61 HOH HOH A . E 3 HOH 49 249 97 HOH HOH A . E 3 HOH 50 250 16 HOH HOH A . E 3 HOH 51 251 8 HOH HOH A . E 3 HOH 52 252 93 HOH HOH A . E 3 HOH 53 253 25 HOH HOH A . E 3 HOH 54 254 87 HOH HOH A . E 3 HOH 55 255 54 HOH HOH A . E 3 HOH 56 256 105 HOH HOH A . E 3 HOH 57 257 88 HOH HOH A . E 3 HOH 58 258 122 HOH HOH A . E 3 HOH 59 259 134 HOH HOH A . E 3 HOH 60 260 106 HOH HOH A . E 3 HOH 61 261 131 HOH HOH A . E 3 HOH 62 262 64 HOH HOH A . E 3 HOH 63 263 103 HOH HOH A . E 3 HOH 64 264 86 HOH HOH A . E 3 HOH 65 265 107 HOH HOH A . E 3 HOH 66 266 68 HOH HOH A . F 3 HOH 1 201 84 HOH HOH B . F 3 HOH 2 202 128 HOH HOH B . F 3 HOH 3 203 55 HOH HOH B . F 3 HOH 4 204 96 HOH HOH B . F 3 HOH 5 205 129 HOH HOH B . F 3 HOH 6 206 41 HOH HOH B . F 3 HOH 7 207 23 HOH HOH B . F 3 HOH 8 208 60 HOH HOH B . F 3 HOH 9 209 104 HOH HOH B . F 3 HOH 10 210 36 HOH HOH B . F 3 HOH 11 211 127 HOH HOH B . F 3 HOH 12 212 33 HOH HOH B . F 3 HOH 13 213 11 HOH HOH B . F 3 HOH 14 214 5 HOH HOH B . F 3 HOH 15 215 82 HOH HOH B . F 3 HOH 16 216 9 HOH HOH B . F 3 HOH 17 217 56 HOH HOH B . F 3 HOH 18 218 30 HOH HOH B . F 3 HOH 19 219 73 HOH HOH B . F 3 HOH 20 220 6 HOH HOH B . F 3 HOH 21 221 109 HOH HOH B . F 3 HOH 22 222 40 HOH HOH B . F 3 HOH 23 223 21 HOH HOH B . F 3 HOH 24 224 51 HOH HOH B . F 3 HOH 25 225 91 HOH HOH B . F 3 HOH 26 226 34 HOH HOH B . F 3 HOH 27 227 65 HOH HOH B . F 3 HOH 28 228 48 HOH HOH B . F 3 HOH 29 229 26 HOH HOH B . F 3 HOH 30 230 90 HOH HOH B . F 3 HOH 31 231 31 HOH HOH B . F 3 HOH 32 232 94 HOH HOH B . F 3 HOH 33 233 130 HOH HOH B . F 3 HOH 34 234 10 HOH HOH B . F 3 HOH 35 235 29 HOH HOH B . F 3 HOH 36 236 58 HOH HOH B . F 3 HOH 37 237 18 HOH HOH B . F 3 HOH 38 238 75 HOH HOH B . F 3 HOH 39 239 63 HOH HOH B . F 3 HOH 40 240 22 HOH HOH B . F 3 HOH 41 241 35 HOH HOH B . F 3 HOH 42 242 32 HOH HOH B . F 3 HOH 43 243 85 HOH HOH B . F 3 HOH 44 244 1 HOH HOH B . F 3 HOH 45 245 126 HOH HOH B . F 3 HOH 46 246 47 HOH HOH B . F 3 HOH 47 247 71 HOH HOH B . F 3 HOH 48 248 27 HOH HOH B . F 3 HOH 49 249 124 HOH HOH B . F 3 HOH 50 250 62 HOH HOH B . F 3 HOH 51 251 118 HOH HOH B . F 3 HOH 52 252 78 HOH HOH B . F 3 HOH 53 253 101 HOH HOH B . F 3 HOH 54 254 133 HOH HOH B . F 3 HOH 55 255 117 HOH HOH B . F 3 HOH 56 256 100 HOH HOH B . F 3 HOH 57 257 79 HOH HOH B . F 3 HOH 58 258 116 HOH HOH B . F 3 HOH 59 259 102 HOH HOH B . F 3 HOH 60 260 125 HOH HOH B . F 3 HOH 61 261 81 HOH HOH B . F 3 HOH 62 262 132 HOH HOH B . F 3 HOH 63 263 38 HOH HOH B . F 3 HOH 64 264 98 HOH HOH B . F 3 HOH 65 265 92 HOH HOH B . F 3 HOH 66 266 69 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 REFMAC 5.8.0222 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.24 'Sep. 1, 2017' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? 5 XSCALE . ? ? ? ? 'data scaling' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # _cell.entry_id 5QU1 _cell.length_a 23.910 _cell.length_b 28.370 _cell.length_c 38.560 _cell.angle_alpha 87.150 _cell.angle_beta 86.490 _cell.angle_gamma 67.040 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QU1 _symmetry.space_group_name_H-M 'P 1' _symmetry.Int_Tables_number 1 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.crystals_number 1 _exptl.entry_id 5QU1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.77 _exptl_crystal.density_percent_sol 30.55 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;5-20 mg/mL protein in 25mM HEPES\/NaOH pH7.8, 150mM NaCl mixed 60-70% with 40-30% reservoir consisting of 0.1M BIS-TRIS\/HCl pH6.5, 2M Ammonium sulfate ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2018-05-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99997 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_wavelength_list 0.99997 _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5QU1 _reflns.pdbx_redundancy 1.94 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 38.470 _reflns.d_resolution_high 1.100 _reflns.number_obs 27558 _reflns.number_all ? _reflns.percent_possible_obs 72.300 _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.420 _reflns.B_iso_Wilson_estimate 14.129 _reflns.pdbx_Rrim_I_all 0.103 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_CC_half 0.996 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 53364 _reflns.pdbx_scaling_rejects 2 _reflns.pdbx_chi_squared 0.990 _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.100 1.130 777 ? 434 ? 1.022 0.610 ? ? 1.790 ? ? 2837 ? ? ? ? ? 15.300 1.406 ? 0.354 1 2 1.130 1.160 1376 ? 707 ? 0.826 0.920 ? ? 1.946 ? ? 2721 ? ? ? ? ? 26.000 1.126 ? 0.478 1 3 1.160 1.190 1967 ? 1023 ? 0.833 0.950 ? ? 1.923 ? ? 2704 ? ? ? ? ? 37.800 1.135 ? 0.440 1 4 1.190 1.230 2639 ? 1362 ? 0.667 1.120 ? ? 1.938 ? ? 2591 ? ? ? ? ? 52.600 0.912 ? 0.566 1 5 1.230 1.270 3827 ? 1960 ? 0.712 1.100 ? ? 1.953 ? ? 2535 ? ? ? ? ? 77.300 0.970 ? 0.524 1 6 1.270 1.310 4126 ? 2070 ? 0.626 1.360 ? ? 1.993 ? ? 2412 ? ? ? ? ? 85.800 0.856 ? 0.572 1 7 1.310 1.360 3878 ? 1984 ? 0.559 1.550 ? ? 1.955 ? ? 2317 ? ? ? ? ? 85.600 0.763 ? 0.631 1 8 1.360 1.420 3770 ? 2016 ? 0.373 2.100 ? ? 1.870 ? ? 2298 ? ? ? ? ? 87.700 0.509 ? 0.783 1 9 1.420 1.480 3885 ? 1941 ? 0.292 2.710 ? ? 2.002 ? ? 2148 ? ? ? ? ? 90.400 0.396 ? 0.865 1 10 1.480 1.550 3681 ? 1888 ? 0.227 3.330 ? ? 1.950 ? ? 2079 ? ? ? ? ? 90.800 0.309 ? 0.911 1 11 1.550 1.640 3189 ? 1763 ? 0.169 4.160 ? ? 1.809 ? ? 1950 ? ? ? ? ? 90.400 0.230 ? 0.943 1 12 1.640 1.740 3433 ? 1709 ? 0.135 5.430 ? ? 2.009 ? ? 1889 ? ? ? ? ? 90.500 0.183 ? 0.965 1 13 1.740 1.860 3167 ? 1587 ? 0.103 6.930 ? ? 1.996 ? ? 1745 ? ? ? ? ? 90.900 0.138 ? 0.976 1 14 1.860 2.000 2770 ? 1479 ? 0.072 9.250 ? ? 1.873 ? ? 1645 ? ? ? ? ? 89.900 0.098 ? 0.985 1 15 2.000 2.200 2610 ? 1341 ? 0.055 11.950 ? ? 1.946 ? ? 1495 ? ? ? ? ? 89.700 0.075 ? 0.989 1 16 2.200 2.460 2410 ? 1210 ? 0.051 13.220 ? ? 1.992 ? ? 1343 ? ? ? ? ? 90.100 0.069 ? 0.990 1 17 2.460 2.840 1992 ? 1075 ? 0.050 13.400 ? ? 1.853 ? ? 1185 ? ? ? ? ? 90.700 0.067 ? 0.991 1 18 2.840 3.470 1781 ? 922 ? 0.040 16.040 ? ? 1.932 ? ? 1024 ? ? ? ? ? 90.000 0.054 ? 0.992 1 19 3.470 4.910 1363 ? 707 ? 0.033 17.920 ? ? 1.928 ? ? 778 ? ? ? ? ? 90.900 0.045 ? 0.995 1 20 4.910 38.470 723 ? 380 ? 0.037 17.910 ? ? 1.903 ? ? 419 ? ? ? ? ? 90.700 0.050 ? 0.993 # _refine.entry_id 5QU1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.0800 _refine.ls_d_res_low 38.4700 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 52.3400 _refine.ls_number_reflns_obs 19835 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1611 _refine.ls_R_factor_R_work 0.1586 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2142 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.6000 _refine.ls_number_reflns_R_free 955 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 8.7830 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.3100 _refine.aniso_B[2][2] -0.5700 _refine.aniso_B[3][3] 0.7500 _refine.aniso_B[1][2] 0.3600 _refine.aniso_B[1][3] -0.1900 _refine.aniso_B[2][3] 0.2000 _refine.correlation_coeff_Fo_to_Fc 0.9640 _refine.correlation_coeff_Fo_to_Fc_free 0.9340 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0730 _refine.pdbx_overall_ESU_R_Free 0.0690 _refine.overall_SU_ML 0.0410 _refine.overall_SU_B 1.9720 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'inhouse model' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 66.800 _refine.B_iso_min 3.010 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.0800 _refine_hist.d_res_low 38.4700 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 132 _refine_hist.number_atoms_total 1100 _refine_hist.pdbx_number_residues_total 112 _refine_hist.pdbx_B_iso_mean_ligand 29.62 _refine_hist.pdbx_B_iso_mean_solvent 18.26 _refine_hist.pdbx_number_atoms_protein 958 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1013 0.012 0.014 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 900 0.001 0.017 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1377 1.543 1.663 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2119 0.983 1.647 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 120 7.424 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 64 30.505 22.813 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 193 13.657 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 21.100 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 121 0.100 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1127 0.009 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 193 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1913 3.018 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 74 22.945 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 1948 9.248 5.000 ? ? # _refine_ls_shell.d_res_high 1.0820 _refine_ls_shell.d_res_low 1.1100 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 2.6000 _refine_ls_shell.number_reflns_R_work 72 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2360 _refine_ls_shell.R_factor_R_free 0.2760 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 4 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.number_reflns_all 76 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # _struct.entry_id 5QU1 _struct.title 'Crystal Structure of the monomeric human Nck SH3.1 domain, triclinic, 1.08A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5QU1 _struct_keywords.text 'SH3 DOMAIN, ADAPTOR, PEPTIDE BINDING, SIGNALING PROTEIN, DOMAIN SWAP' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NCK1_HUMAN _struct_ref.pdbx_db_accession P16333 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code EVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERK _struct_ref.pdbx_align_begin 4 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5QU1 A 27 ? 82 ? P16333 4 ? 59 ? 2 57 2 1 5QU1 B 27 ? 82 ? P16333 4 ? 59 ? 2 57 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5QU1 SER A 1 ? UNP P16333 ? ? 'expression tag' -24 1 1 5QU1 GLY A 2 ? UNP P16333 ? ? 'expression tag' -23 2 1 5QU1 GLY A 3 ? UNP P16333 ? ? 'expression tag' -22 3 1 5QU1 LEU A 4 ? UNP P16333 ? ? 'expression tag' -21 4 1 5QU1 ASN A 5 ? UNP P16333 ? ? 'expression tag' -20 5 1 5QU1 ASP A 6 ? UNP P16333 ? ? 'expression tag' -19 6 1 5QU1 ILE A 7 ? UNP P16333 ? ? 'expression tag' -18 7 1 5QU1 PHE A 8 ? UNP P16333 ? ? 'expression tag' -17 8 1 5QU1 GLU A 9 ? UNP P16333 ? ? 'expression tag' -16 9 1 5QU1 ALA A 10 ? UNP P16333 ? ? 'expression tag' -15 10 1 5QU1 GLN A 11 ? UNP P16333 ? ? 'expression tag' -14 11 1 5QU1 LYS A 12 ? UNP P16333 ? ? 'expression tag' -13 12 1 5QU1 ILE A 13 ? UNP P16333 ? ? 'expression tag' -12 13 1 5QU1 GLU A 14 ? UNP P16333 ? ? 'expression tag' -11 14 1 5QU1 TRP A 15 ? UNP P16333 ? ? 'expression tag' -10 15 1 5QU1 HIS A 16 ? UNP P16333 ? ? 'expression tag' -9 16 1 5QU1 GLU A 17 ? UNP P16333 ? ? 'expression tag' -8 17 1 5QU1 GLY A 18 ? UNP P16333 ? ? 'expression tag' -7 18 1 5QU1 SER A 19 ? UNP P16333 ? ? 'expression tag' -6 19 1 5QU1 GLU A 20 ? UNP P16333 ? ? 'expression tag' -5 20 1 5QU1 ASN A 21 ? UNP P16333 ? ? 'expression tag' -4 21 1 5QU1 LEU A 22 ? UNP P16333 ? ? 'expression tag' -3 22 1 5QU1 TYR A 23 ? UNP P16333 ? ? 'expression tag' -2 23 1 5QU1 PHE A 24 ? UNP P16333 ? ? 'expression tag' -1 24 1 5QU1 GLN A 25 ? UNP P16333 ? ? 'expression tag' 0 25 1 5QU1 SER A 26 ? UNP P16333 ? ? 'expression tag' 1 26 2 5QU1 SER B 1 ? UNP P16333 ? ? 'expression tag' -24 27 2 5QU1 GLY B 2 ? UNP P16333 ? ? 'expression tag' -23 28 2 5QU1 GLY B 3 ? UNP P16333 ? ? 'expression tag' -22 29 2 5QU1 LEU B 4 ? UNP P16333 ? ? 'expression tag' -21 30 2 5QU1 ASN B 5 ? UNP P16333 ? ? 'expression tag' -20 31 2 5QU1 ASP B 6 ? UNP P16333 ? ? 'expression tag' -19 32 2 5QU1 ILE B 7 ? UNP P16333 ? ? 'expression tag' -18 33 2 5QU1 PHE B 8 ? UNP P16333 ? ? 'expression tag' -17 34 2 5QU1 GLU B 9 ? UNP P16333 ? ? 'expression tag' -16 35 2 5QU1 ALA B 10 ? UNP P16333 ? ? 'expression tag' -15 36 2 5QU1 GLN B 11 ? UNP P16333 ? ? 'expression tag' -14 37 2 5QU1 LYS B 12 ? UNP P16333 ? ? 'expression tag' -13 38 2 5QU1 ILE B 13 ? UNP P16333 ? ? 'expression tag' -12 39 2 5QU1 GLU B 14 ? UNP P16333 ? ? 'expression tag' -11 40 2 5QU1 TRP B 15 ? UNP P16333 ? ? 'expression tag' -10 41 2 5QU1 HIS B 16 ? UNP P16333 ? ? 'expression tag' -9 42 2 5QU1 GLU B 17 ? UNP P16333 ? ? 'expression tag' -8 43 2 5QU1 GLY B 18 ? UNP P16333 ? ? 'expression tag' -7 44 2 5QU1 SER B 19 ? UNP P16333 ? ? 'expression tag' -6 45 2 5QU1 GLU B 20 ? UNP P16333 ? ? 'expression tag' -5 46 2 5QU1 ASN B 21 ? UNP P16333 ? ? 'expression tag' -4 47 2 5QU1 LEU B 22 ? UNP P16333 ? ? 'expression tag' -3 48 2 5QU1 TYR B 23 ? UNP P16333 ? ? 'expression tag' -2 49 2 5QU1 PHE B 24 ? UNP P16333 ? ? 'expression tag' -1 50 2 5QU1 GLN B 25 ? UNP P16333 ? ? 'expression tag' 0 51 2 5QU1 SER B 26 ? UNP P16333 ? ? 'expression tag' 1 52 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'elutes as a monomer' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 71 ? PRO A 75 ? THR A 46 PRO A 50 AA1 2 TRP A 61 ? ARG A 65 ? TRP A 36 ARG A 40 AA1 3 ARG A 51 ? ASP A 56 ? ARG A 26 ASP A 31 AA1 4 VAL A 28 ? ALA A 32 ? VAL A 3 ALA A 7 AA1 5 VAL A 79 ? GLU A 80 ? VAL A 54 GLU A 55 AA2 1 THR B 71 ? PRO B 75 ? THR B 46 PRO B 50 AA2 2 TRP B 61 ? ARG B 65 ? TRP B 36 ARG B 40 AA2 3 ARG B 51 ? ASP B 56 ? ARG B 26 ASP B 31 AA2 4 VAL B 30 ? ALA B 32 ? VAL B 5 ALA B 7 AA2 5 VAL B 79 ? ARG B 81 ? VAL B 54 ARG B 56 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLY A 72 ? O GLY A 47 N VAL A 64 ? N VAL A 39 AA1 2 3 O ARG A 63 ? O ARG A 38 N LEU A 55 ? N LEU A 30 AA1 3 4 O LEU A 54 ? O LEU A 29 N VAL A 28 ? N VAL A 3 AA1 4 5 N VAL A 31 ? N VAL A 6 O GLU A 80 ? O GLU A 55 AA2 1 2 O VAL B 74 ? O VAL B 49 N TRP B 62 ? N TRP B 37 AA2 2 3 O ARG B 63 ? O ARG B 38 N LEU B 55 ? N LEU B 30 AA2 3 4 O LEU B 52 ? O LEU B 27 N VAL B 30 ? N VAL B 5 AA2 4 5 N VAL B 31 ? N VAL B 6 O GLU B 80 ? O GLU B 55 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 101 ? 5 'binding site for residue SO4 A 101' AC2 Software B SO4 101 ? 3 'binding site for residue SO4 B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 TRP A 62 ? TRP A 37 . ? 1_555 ? 2 AC1 5 GLU A 80 ? GLU A 55 . ? 1_555 ? 3 AC1 5 ARG A 81 ? ARG A 56 . ? 1_555 ? 4 AC1 5 HOH E . ? HOH A 203 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 234 . ? 1_555 ? 6 AC2 3 TRP B 62 ? TRP B 37 . ? 1_555 ? 7 AC2 3 ARG B 81 ? ARG B 56 . ? 1_555 ? 8 AC2 3 HOH F . ? HOH B 212 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 257 ? ? O A HOH 264 ? ? 1.98 2 1 NZ B LYS 45 ? ? O B HOH 201 ? ? 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 24 ? ? 83.05 -2.59 2 1 GLN B 17 ? ? 83.49 -15.23 3 1 ASN B 24 ? ? 82.70 -3.82 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 40 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.236 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -24 ? A SER 1 2 1 Y 1 A GLY -23 ? A GLY 2 3 1 Y 1 A GLY -22 ? A GLY 3 4 1 Y 1 A LEU -21 ? A LEU 4 5 1 Y 1 A ASN -20 ? A ASN 5 6 1 Y 1 A ASP -19 ? A ASP 6 7 1 Y 1 A ILE -18 ? A ILE 7 8 1 Y 1 A PHE -17 ? A PHE 8 9 1 Y 1 A GLU -16 ? A GLU 9 10 1 Y 1 A ALA -15 ? A ALA 10 11 1 Y 1 A GLN -14 ? A GLN 11 12 1 Y 1 A LYS -13 ? A LYS 12 13 1 Y 1 A ILE -12 ? A ILE 13 14 1 Y 1 A GLU -11 ? A GLU 14 15 1 Y 1 A TRP -10 ? A TRP 15 16 1 Y 1 A HIS -9 ? A HIS 16 17 1 Y 1 A GLU -8 ? A GLU 17 18 1 Y 1 A GLY -7 ? A GLY 18 19 1 Y 1 A SER -6 ? A SER 19 20 1 Y 1 A GLU -5 ? A GLU 20 21 1 Y 1 A ASN -4 ? A ASN 21 22 1 Y 1 A LEU -3 ? A LEU 22 23 1 Y 1 A TYR -2 ? A TYR 23 24 1 Y 1 A PHE -1 ? A PHE 24 25 1 Y 1 A GLN 0 ? A GLN 25 26 1 Y 1 A SER 1 ? A SER 26 27 1 Y 1 B SER -24 ? B SER 1 28 1 Y 1 B GLY -23 ? B GLY 2 29 1 Y 1 B GLY -22 ? B GLY 3 30 1 Y 1 B LEU -21 ? B LEU 4 31 1 Y 1 B ASN -20 ? B ASN 5 32 1 Y 1 B ASP -19 ? B ASP 6 33 1 Y 1 B ILE -18 ? B ILE 7 34 1 Y 1 B PHE -17 ? B PHE 8 35 1 Y 1 B GLU -16 ? B GLU 9 36 1 Y 1 B ALA -15 ? B ALA 10 37 1 Y 1 B GLN -14 ? B GLN 11 38 1 Y 1 B LYS -13 ? B LYS 12 39 1 Y 1 B ILE -12 ? B ILE 13 40 1 Y 1 B GLU -11 ? B GLU 14 41 1 Y 1 B TRP -10 ? B TRP 15 42 1 Y 1 B HIS -9 ? B HIS 16 43 1 Y 1 B GLU -8 ? B GLU 17 44 1 Y 1 B GLY -7 ? B GLY 18 45 1 Y 1 B SER -6 ? B SER 19 46 1 Y 1 B GLU -5 ? B GLU 20 47 1 Y 1 B ASN -4 ? B ASN 21 48 1 Y 1 B LEU -3 ? B LEU 22 49 1 Y 1 B TYR -2 ? B TYR 23 50 1 Y 1 B PHE -1 ? B PHE 24 51 1 Y 1 B GLN 0 ? B GLN 25 52 1 Y 1 B SER 1 ? B SER 26 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 SO4 S S N N 290 SO4 O1 O N N 291 SO4 O2 O N N 292 SO4 O3 O N N 293 SO4 O4 O N N 294 THR N N N N 295 THR CA C N S 296 THR C C N N 297 THR O O N N 298 THR CB C N R 299 THR OG1 O N N 300 THR CG2 C N N 301 THR OXT O N N 302 THR H H N N 303 THR H2 H N N 304 THR HA H N N 305 THR HB H N N 306 THR HG1 H N N 307 THR HG21 H N N 308 THR HG22 H N N 309 THR HG23 H N N 310 THR HXT H N N 311 TRP N N N N 312 TRP CA C N S 313 TRP C C N N 314 TRP O O N N 315 TRP CB C N N 316 TRP CG C Y N 317 TRP CD1 C Y N 318 TRP CD2 C Y N 319 TRP NE1 N Y N 320 TRP CE2 C Y N 321 TRP CE3 C Y N 322 TRP CZ2 C Y N 323 TRP CZ3 C Y N 324 TRP CH2 C Y N 325 TRP OXT O N N 326 TRP H H N N 327 TRP H2 H N N 328 TRP HA H N N 329 TRP HB2 H N N 330 TRP HB3 H N N 331 TRP HD1 H N N 332 TRP HE1 H N N 333 TRP HE3 H N N 334 TRP HZ2 H N N 335 TRP HZ3 H N N 336 TRP HH2 H N N 337 TRP HXT H N N 338 TYR N N N N 339 TYR CA C N S 340 TYR C C N N 341 TYR O O N N 342 TYR CB C N N 343 TYR CG C Y N 344 TYR CD1 C Y N 345 TYR CD2 C Y N 346 TYR CE1 C Y N 347 TYR CE2 C Y N 348 TYR CZ C Y N 349 TYR OH O N N 350 TYR OXT O N N 351 TYR H H N N 352 TYR H2 H N N 353 TYR HA H N N 354 TYR HB2 H N N 355 TYR HB3 H N N 356 TYR HD1 H N N 357 TYR HD2 H N N 358 TYR HE1 H N N 359 TYR HE2 H N N 360 TYR HH H N N 361 TYR HXT H N N 362 VAL N N N N 363 VAL CA C N S 364 VAL C C N N 365 VAL O O N N 366 VAL CB C N N 367 VAL CG1 C N N 368 VAL CG2 C N N 369 VAL OXT O N N 370 VAL H H N N 371 VAL H2 H N N 372 VAL HA H N N 373 VAL HB H N N 374 VAL HG11 H N N 375 VAL HG12 H N N 376 VAL HG13 H N N 377 VAL HG21 H N N 378 VAL HG22 H N N 379 VAL HG23 H N N 380 VAL HXT H N N 381 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 SO4 S O1 doub N N 277 SO4 S O2 doub N N 278 SO4 S O3 sing N N 279 SO4 S O4 sing N N 280 THR N CA sing N N 281 THR N H sing N N 282 THR N H2 sing N N 283 THR CA C sing N N 284 THR CA CB sing N N 285 THR CA HA sing N N 286 THR C O doub N N 287 THR C OXT sing N N 288 THR CB OG1 sing N N 289 THR CB CG2 sing N N 290 THR CB HB sing N N 291 THR OG1 HG1 sing N N 292 THR CG2 HG21 sing N N 293 THR CG2 HG22 sing N N 294 THR CG2 HG23 sing N N 295 THR OXT HXT sing N N 296 TRP N CA sing N N 297 TRP N H sing N N 298 TRP N H2 sing N N 299 TRP CA C sing N N 300 TRP CA CB sing N N 301 TRP CA HA sing N N 302 TRP C O doub N N 303 TRP C OXT sing N N 304 TRP CB CG sing N N 305 TRP CB HB2 sing N N 306 TRP CB HB3 sing N N 307 TRP CG CD1 doub Y N 308 TRP CG CD2 sing Y N 309 TRP CD1 NE1 sing Y N 310 TRP CD1 HD1 sing N N 311 TRP CD2 CE2 doub Y N 312 TRP CD2 CE3 sing Y N 313 TRP NE1 CE2 sing Y N 314 TRP NE1 HE1 sing N N 315 TRP CE2 CZ2 sing Y N 316 TRP CE3 CZ3 doub Y N 317 TRP CE3 HE3 sing N N 318 TRP CZ2 CH2 doub Y N 319 TRP CZ2 HZ2 sing N N 320 TRP CZ3 CH2 sing Y N 321 TRP CZ3 HZ3 sing N N 322 TRP CH2 HH2 sing N N 323 TRP OXT HXT sing N N 324 TYR N CA sing N N 325 TYR N H sing N N 326 TYR N H2 sing N N 327 TYR CA C sing N N 328 TYR CA CB sing N N 329 TYR CA HA sing N N 330 TYR C O doub N N 331 TYR C OXT sing N N 332 TYR CB CG sing N N 333 TYR CB HB2 sing N N 334 TYR CB HB3 sing N N 335 TYR CG CD1 doub Y N 336 TYR CG CD2 sing Y N 337 TYR CD1 CE1 sing Y N 338 TYR CD1 HD1 sing N N 339 TYR CD2 CE2 doub Y N 340 TYR CD2 HD2 sing N N 341 TYR CE1 CZ doub Y N 342 TYR CE1 HE1 sing N N 343 TYR CE2 CZ sing Y N 344 TYR CE2 HE2 sing N N 345 TYR CZ OH sing N N 346 TYR OH HH sing N N 347 TYR OXT HXT sing N N 348 VAL N CA sing N N 349 VAL N H sing N N 350 VAL N H2 sing N N 351 VAL CA C sing N N 352 VAL CA CB sing N N 353 VAL CA HA sing N N 354 VAL C O doub N N 355 VAL C OXT sing N N 356 VAL CB CG1 sing N N 357 VAL CB CG2 sing N N 358 VAL CB HB sing N N 359 VAL CG1 HG11 sing N N 360 VAL CG1 HG12 sing N N 361 VAL CG1 HG13 sing N N 362 VAL CG2 HG21 sing N N 363 VAL CG2 HG22 sing N N 364 VAL CG2 HG23 sing N N 365 VAL OXT HXT sing N N 366 # _pdbx_deposit_group.group_id G_1002110 _pdbx_deposit_group.group_description ;Monomeric and dimeric, as well as peptide-bound structures of the first SH3 domain of the human adapter protein Nck1 were determined. ; _pdbx_deposit_group.group_title 'structural plasticity of the Nck1-SH3.1 domain' _pdbx_deposit_group.group_type undefined # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details 'inhouse model' # _atom_sites.entry_id 5QU1 _atom_sites.fract_transf_matrix[1][1] 0.041824 _atom_sites.fract_transf_matrix[1][2] -0.017715 _atom_sites.fract_transf_matrix[1][3] -0.002071 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.038280 _atom_sites.fract_transf_matrix[2][3] -0.001078 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025993 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_