data_5QU3 # _entry.id 5QU3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5QU3 pdb_00005qu3 10.2210/pdb5qu3/pdb WWPDB D_1001402408 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-02-12 2 'Structure model' 1 1 2021-05-12 3 'Structure model' 1 2 2021-06-30 4 'Structure model' 1 3 2024-03-06 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_deposit_group 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 5 'Structure model' citation 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_deposit_group.group_description' 2 2 'Structure model' '_pdbx_deposit_group.group_type' 3 3 'Structure model' '_citation.country' 4 3 'Structure model' '_citation.journal_abbrev' 5 3 'Structure model' '_citation.journal_id_ASTM' 6 3 'Structure model' '_citation.journal_id_CSD' 7 3 'Structure model' '_citation.journal_id_ISSN' 8 3 'Structure model' '_citation.journal_volume' 9 3 'Structure model' '_citation.page_first' 10 3 'Structure model' '_citation.page_last' 11 3 'Structure model' '_citation.pdbx_database_id_DOI' 12 3 'Structure model' '_citation.pdbx_database_id_PubMed' 13 3 'Structure model' '_citation.title' 14 3 'Structure model' '_citation.year' 15 4 'Structure model' '_database_2.pdbx_DOI' 16 4 'Structure model' '_database_2.pdbx_database_accession' 17 5 'Structure model' '_citation.title' # _pdbx_database_status.entry_id 5QU3 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2019-12-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.pdbx_ordinal 1 _audit_author.name 'Rudolph, M.G.' # _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.title ;Small molecule AX-024 reduces T cell proliferation independently of CD3ε/Nck1 interaction, which is governed by a domain swap in the Nck1-SH3.1 domain. ; _citation.year 2020 _citation.journal_volume 295 _citation.page_first 7849 _citation.page_last 7864 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 1083-351X _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 32317279 _citation.pdbx_database_id_DOI 10.1074/jbc.RA120.012788 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Richter, K.' 1 ? primary 'Rufer, A.C.' 2 ? primary 'Muller, M.' 3 ? primary 'Burger, D.' 4 ? primary 'Casagrande, F.' 5 ? primary 'Grossenbacher, T.' 6 ? primary 'Huber, S.' 7 ? primary 'Hug, M.N.' 8 ? primary 'Koldewey, P.' 9 0000-0003-3945-1063 primary ;D'Osualdo, A. ; 10 ? primary 'Schlatter, D.' 11 ? primary 'Stoll, T.' 12 ? primary 'Rudolph, M.G.' 13 0000-0003-0447-1101 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cytoplasmic protein NCK1' 9766.842 2 ? ? 'SH3 1' ? 2 water nat water 18.015 204 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NCK adaptor protein 1,Nck-1,SH2/SH3 adaptor protein NCK-alpha' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SGGLNDIFEAQKIEWHEGSENLYFQSEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVE RK ; _entity_poly.pdbx_seq_one_letter_code_can ;SGGLNDIFEAQKIEWHEGSENLYFQSEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVE RK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLY n 1 3 GLY n 1 4 LEU n 1 5 ASN n 1 6 ASP n 1 7 ILE n 1 8 PHE n 1 9 GLU n 1 10 ALA n 1 11 GLN n 1 12 LYS n 1 13 ILE n 1 14 GLU n 1 15 TRP n 1 16 HIS n 1 17 GLU n 1 18 GLY n 1 19 SER n 1 20 GLU n 1 21 ASN n 1 22 LEU n 1 23 TYR n 1 24 PHE n 1 25 GLN n 1 26 SER n 1 27 GLU n 1 28 VAL n 1 29 VAL n 1 30 VAL n 1 31 VAL n 1 32 ALA n 1 33 LYS n 1 34 PHE n 1 35 ASP n 1 36 TYR n 1 37 VAL n 1 38 ALA n 1 39 GLN n 1 40 GLN n 1 41 GLU n 1 42 GLN n 1 43 GLU n 1 44 LEU n 1 45 ASP n 1 46 ILE n 1 47 LYS n 1 48 LYS n 1 49 ASN n 1 50 GLU n 1 51 ARG n 1 52 LEU n 1 53 TRP n 1 54 LEU n 1 55 LEU n 1 56 ASP n 1 57 ASP n 1 58 SER n 1 59 LYS n 1 60 SER n 1 61 TRP n 1 62 TRP n 1 63 ARG n 1 64 VAL n 1 65 ARG n 1 66 ASN n 1 67 SER n 1 68 MET n 1 69 ASN n 1 70 LYS n 1 71 THR n 1 72 GLY n 1 73 PHE n 1 74 VAL n 1 75 PRO n 1 76 SER n 1 77 ASN n 1 78 TYR n 1 79 VAL n 1 80 GLU n 1 81 ARG n 1 82 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 82 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NCK1, NCK' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET28a(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -21 ? ? ? A . n A 1 2 GLY 2 -20 ? ? ? A . n A 1 3 GLY 3 -19 ? ? ? A . n A 1 4 LEU 4 -18 ? ? ? A . n A 1 5 ASN 5 -17 ? ? ? A . n A 1 6 ASP 6 -16 ? ? ? A . n A 1 7 ILE 7 -15 ? ? ? A . n A 1 8 PHE 8 -14 ? ? ? A . n A 1 9 GLU 9 -13 ? ? ? A . n A 1 10 ALA 10 -12 ? ? ? A . n A 1 11 GLN 11 -11 ? ? ? A . n A 1 12 LYS 12 -10 ? ? ? A . n A 1 13 ILE 13 -9 ? ? ? A . n A 1 14 GLU 14 -8 ? ? ? A . n A 1 15 TRP 15 -7 ? ? ? A . n A 1 16 HIS 16 -6 ? ? ? A . n A 1 17 GLU 17 -5 ? ? ? A . n A 1 18 GLY 18 -4 ? ? ? A . n A 1 19 SER 19 -3 ? ? ? A . n A 1 20 GLU 20 -2 ? ? ? A . n A 1 21 ASN 21 -1 ? ? ? A . n A 1 22 LEU 22 0 ? ? ? A . n A 1 23 TYR 23 1 ? ? ? A . n A 1 24 PHE 24 2 ? ? ? A . n A 1 25 GLN 25 3 ? ? ? A . n A 1 26 SER 26 4 4 SER SER A . n A 1 27 GLU 27 5 5 GLU GLU A . n A 1 28 VAL 28 6 6 VAL VAL A . n A 1 29 VAL 29 7 7 VAL VAL A . n A 1 30 VAL 30 8 8 VAL VAL A . n A 1 31 VAL 31 9 9 VAL VAL A . n A 1 32 ALA 32 10 10 ALA ALA A . n A 1 33 LYS 33 11 11 LYS LYS A . n A 1 34 PHE 34 12 12 PHE PHE A . n A 1 35 ASP 35 13 13 ASP ASP A . n A 1 36 TYR 36 14 14 TYR TYR A . n A 1 37 VAL 37 15 15 VAL VAL A . n A 1 38 ALA 38 16 16 ALA ALA A . n A 1 39 GLN 39 17 17 GLN GLN A . n A 1 40 GLN 40 18 18 GLN GLN A . n A 1 41 GLU 41 19 19 GLU GLU A . n A 1 42 GLN 42 20 20 GLN GLN A . n A 1 43 GLU 43 21 21 GLU GLU A . n A 1 44 LEU 44 22 22 LEU LEU A . n A 1 45 ASP 45 23 23 ASP ASP A . n A 1 46 ILE 46 24 24 ILE ILE A . n A 1 47 LYS 47 25 25 LYS LYS A . n A 1 48 LYS 48 26 26 LYS LYS A . n A 1 49 ASN 49 27 27 ASN ASN A . n A 1 50 GLU 50 28 28 GLU GLU A . n A 1 51 ARG 51 29 29 ARG ARG A . n A 1 52 LEU 52 30 30 LEU LEU A . n A 1 53 TRP 53 31 31 TRP TRP A . n A 1 54 LEU 54 32 32 LEU LEU A . n A 1 55 LEU 55 33 33 LEU LEU A . n A 1 56 ASP 56 34 34 ASP ASP A . n A 1 57 ASP 57 35 35 ASP ASP A . n A 1 58 SER 58 36 36 SER SER A . n A 1 59 LYS 59 37 37 LYS LYS A . n A 1 60 SER 60 38 38 SER SER A . n A 1 61 TRP 61 39 39 TRP TRP A . n A 1 62 TRP 62 40 40 TRP TRP A . n A 1 63 ARG 63 41 41 ARG ARG A . n A 1 64 VAL 64 42 42 VAL VAL A . n A 1 65 ARG 65 43 43 ARG ARG A . n A 1 66 ASN 66 44 44 ASN ASN A . n A 1 67 SER 67 45 45 SER SER A . n A 1 68 MET 68 46 46 MET MET A . n A 1 69 ASN 69 47 47 ASN ASN A . n A 1 70 LYS 70 48 48 LYS LYS A . n A 1 71 THR 71 49 49 THR THR A . n A 1 72 GLY 72 50 50 GLY GLY A . n A 1 73 PHE 73 51 51 PHE PHE A . n A 1 74 VAL 74 52 52 VAL VAL A . n A 1 75 PRO 75 53 53 PRO PRO A . n A 1 76 SER 76 54 54 SER SER A . n A 1 77 ASN 77 55 55 ASN ASN A . n A 1 78 TYR 78 56 56 TYR TYR A . n A 1 79 VAL 79 57 57 VAL VAL A . n A 1 80 GLU 80 58 58 GLU GLU A . n A 1 81 ARG 81 59 59 ARG ARG A . n A 1 82 LYS 82 60 60 LYS LYS A . n B 1 1 SER 1 -21 ? ? ? B . n B 1 2 GLY 2 -20 ? ? ? B . n B 1 3 GLY 3 -19 ? ? ? B . n B 1 4 LEU 4 -18 ? ? ? B . n B 1 5 ASN 5 -17 ? ? ? B . n B 1 6 ASP 6 -16 ? ? ? B . n B 1 7 ILE 7 -15 ? ? ? B . n B 1 8 PHE 8 -14 ? ? ? B . n B 1 9 GLU 9 -13 ? ? ? B . n B 1 10 ALA 10 -12 ? ? ? B . n B 1 11 GLN 11 -11 ? ? ? B . n B 1 12 LYS 12 -10 ? ? ? B . n B 1 13 ILE 13 -9 ? ? ? B . n B 1 14 GLU 14 -8 ? ? ? B . n B 1 15 TRP 15 -7 ? ? ? B . n B 1 16 HIS 16 -6 ? ? ? B . n B 1 17 GLU 17 -5 ? ? ? B . n B 1 18 GLY 18 -4 ? ? ? B . n B 1 19 SER 19 -3 ? ? ? B . n B 1 20 GLU 20 -2 ? ? ? B . n B 1 21 ASN 21 -1 ? ? ? B . n B 1 22 LEU 22 0 ? ? ? B . n B 1 23 TYR 23 1 ? ? ? B . n B 1 24 PHE 24 2 ? ? ? B . n B 1 25 GLN 25 3 ? ? ? B . n B 1 26 SER 26 4 4 SER SER B . n B 1 27 GLU 27 5 5 GLU GLU B . n B 1 28 VAL 28 6 6 VAL VAL B . n B 1 29 VAL 29 7 7 VAL VAL B . n B 1 30 VAL 30 8 8 VAL VAL B . n B 1 31 VAL 31 9 9 VAL VAL B . n B 1 32 ALA 32 10 10 ALA ALA B . n B 1 33 LYS 33 11 11 LYS LYS B . n B 1 34 PHE 34 12 12 PHE PHE B . n B 1 35 ASP 35 13 13 ASP ASP B . n B 1 36 TYR 36 14 14 TYR TYR B . n B 1 37 VAL 37 15 15 VAL VAL B . n B 1 38 ALA 38 16 16 ALA ALA B . n B 1 39 GLN 39 17 17 GLN GLN B . n B 1 40 GLN 40 18 18 GLN GLN B . n B 1 41 GLU 41 19 19 GLU GLU B . n B 1 42 GLN 42 20 20 GLN GLN B . n B 1 43 GLU 43 21 21 GLU GLU B . n B 1 44 LEU 44 22 22 LEU LEU B . n B 1 45 ASP 45 23 23 ASP ASP B . n B 1 46 ILE 46 24 24 ILE ILE B . n B 1 47 LYS 47 25 25 LYS LYS B . n B 1 48 LYS 48 26 26 LYS LYS B . n B 1 49 ASN 49 27 27 ASN ASN B . n B 1 50 GLU 50 28 28 GLU GLU B . n B 1 51 ARG 51 29 29 ARG ARG B . n B 1 52 LEU 52 30 30 LEU LEU B . n B 1 53 TRP 53 31 31 TRP TRP B . n B 1 54 LEU 54 32 32 LEU LEU B . n B 1 55 LEU 55 33 33 LEU LEU B . n B 1 56 ASP 56 34 34 ASP ASP B . n B 1 57 ASP 57 35 35 ASP ASP B . n B 1 58 SER 58 36 36 SER SER B . n B 1 59 LYS 59 37 37 LYS LYS B . n B 1 60 SER 60 38 38 SER SER B . n B 1 61 TRP 61 39 39 TRP TRP B . n B 1 62 TRP 62 40 40 TRP TRP B . n B 1 63 ARG 63 41 41 ARG ARG B . n B 1 64 VAL 64 42 42 VAL VAL B . n B 1 65 ARG 65 43 43 ARG ARG B . n B 1 66 ASN 66 44 44 ASN ASN B . n B 1 67 SER 67 45 45 SER SER B . n B 1 68 MET 68 46 46 MET MET B . n B 1 69 ASN 69 47 47 ASN ASN B . n B 1 70 LYS 70 48 48 LYS LYS B . n B 1 71 THR 71 49 49 THR THR B . n B 1 72 GLY 72 50 50 GLY GLY B . n B 1 73 PHE 73 51 51 PHE PHE B . n B 1 74 VAL 74 52 52 VAL VAL B . n B 1 75 PRO 75 53 53 PRO PRO B . n B 1 76 SER 76 54 54 SER SER B . n B 1 77 ASN 77 55 55 ASN ASN B . n B 1 78 TYR 78 56 56 TYR TYR B . n B 1 79 VAL 79 57 57 VAL VAL B . n B 1 80 GLU 80 58 58 GLU GLU B . n B 1 81 ARG 81 59 59 ARG ARG B . n B 1 82 LYS 82 60 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 70 HOH HOH A . C 2 HOH 2 102 15 HOH HOH A . C 2 HOH 3 103 195 HOH HOH A . C 2 HOH 4 104 5 HOH HOH A . C 2 HOH 5 105 155 HOH HOH A . C 2 HOH 6 106 112 HOH HOH A . C 2 HOH 7 107 48 HOH HOH A . C 2 HOH 8 108 68 HOH HOH A . C 2 HOH 9 109 56 HOH HOH A . C 2 HOH 10 110 60 HOH HOH A . C 2 HOH 11 111 16 HOH HOH A . C 2 HOH 12 112 201 HOH HOH A . C 2 HOH 13 113 25 HOH HOH A . C 2 HOH 14 114 9 HOH HOH A . C 2 HOH 15 115 158 HOH HOH A . C 2 HOH 16 116 119 HOH HOH A . C 2 HOH 17 117 6 HOH HOH A . C 2 HOH 18 118 113 HOH HOH A . C 2 HOH 19 119 20 HOH HOH A . C 2 HOH 20 120 58 HOH HOH A . C 2 HOH 21 121 197 HOH HOH A . C 2 HOH 22 122 105 HOH HOH A . C 2 HOH 23 123 54 HOH HOH A . C 2 HOH 24 124 14 HOH HOH A . C 2 HOH 25 125 7 HOH HOH A . C 2 HOH 26 126 65 HOH HOH A . C 2 HOH 27 127 77 HOH HOH A . C 2 HOH 28 128 198 HOH HOH A . C 2 HOH 29 129 37 HOH HOH A . C 2 HOH 30 130 106 HOH HOH A . C 2 HOH 31 131 80 HOH HOH A . C 2 HOH 32 132 99 HOH HOH A . C 2 HOH 33 133 66 HOH HOH A . C 2 HOH 34 134 76 HOH HOH A . C 2 HOH 35 135 32 HOH HOH A . C 2 HOH 36 136 29 HOH HOH A . C 2 HOH 37 137 146 HOH HOH A . C 2 HOH 38 138 35 HOH HOH A . C 2 HOH 39 139 137 HOH HOH A . C 2 HOH 40 140 12 HOH HOH A . C 2 HOH 41 141 178 HOH HOH A . C 2 HOH 42 142 41 HOH HOH A . C 2 HOH 43 143 74 HOH HOH A . C 2 HOH 44 144 69 HOH HOH A . C 2 HOH 45 145 123 HOH HOH A . C 2 HOH 46 146 53 HOH HOH A . C 2 HOH 47 147 36 HOH HOH A . C 2 HOH 48 148 33 HOH HOH A . C 2 HOH 49 149 63 HOH HOH A . C 2 HOH 50 150 4 HOH HOH A . C 2 HOH 51 151 159 HOH HOH A . C 2 HOH 52 152 85 HOH HOH A . C 2 HOH 53 153 72 HOH HOH A . C 2 HOH 54 154 139 HOH HOH A . C 2 HOH 55 155 73 HOH HOH A . C 2 HOH 56 156 22 HOH HOH A . C 2 HOH 57 157 50 HOH HOH A . C 2 HOH 58 158 110 HOH HOH A . C 2 HOH 59 159 177 HOH HOH A . C 2 HOH 60 160 28 HOH HOH A . C 2 HOH 61 161 49 HOH HOH A . C 2 HOH 62 162 200 HOH HOH A . C 2 HOH 63 163 46 HOH HOH A . C 2 HOH 64 164 86 HOH HOH A . C 2 HOH 65 165 156 HOH HOH A . C 2 HOH 66 166 188 HOH HOH A . C 2 HOH 67 167 124 HOH HOH A . C 2 HOH 68 168 135 HOH HOH A . C 2 HOH 69 169 154 HOH HOH A . C 2 HOH 70 170 3 HOH HOH A . C 2 HOH 71 171 168 HOH HOH A . C 2 HOH 72 172 186 HOH HOH A . C 2 HOH 73 173 150 HOH HOH A . C 2 HOH 74 174 78 HOH HOH A . C 2 HOH 75 175 126 HOH HOH A . C 2 HOH 76 176 120 HOH HOH A . C 2 HOH 77 177 173 HOH HOH A . C 2 HOH 78 178 152 HOH HOH A . C 2 HOH 79 179 103 HOH HOH A . C 2 HOH 80 180 91 HOH HOH A . C 2 HOH 81 181 166 HOH HOH A . C 2 HOH 82 182 144 HOH HOH A . C 2 HOH 83 183 151 HOH HOH A . C 2 HOH 84 184 147 HOH HOH A . C 2 HOH 85 185 163 HOH HOH A . C 2 HOH 86 186 24 HOH HOH A . C 2 HOH 87 187 93 HOH HOH A . C 2 HOH 88 188 141 HOH HOH A . C 2 HOH 89 189 102 HOH HOH A . C 2 HOH 90 190 164 HOH HOH A . C 2 HOH 91 191 174 HOH HOH A . C 2 HOH 92 192 97 HOH HOH A . C 2 HOH 93 193 27 HOH HOH A . C 2 HOH 94 194 143 HOH HOH A . C 2 HOH 95 195 96 HOH HOH A . C 2 HOH 96 196 148 HOH HOH A . C 2 HOH 97 197 95 HOH HOH A . C 2 HOH 98 198 51 HOH HOH A . C 2 HOH 99 199 87 HOH HOH A . C 2 HOH 100 200 206 HOH HOH A . C 2 HOH 101 201 127 HOH HOH A . C 2 HOH 102 202 92 HOH HOH A . C 2 HOH 103 203 190 HOH HOH A . C 2 HOH 104 204 107 HOH HOH A . C 2 HOH 105 205 140 HOH HOH A . C 2 HOH 106 206 161 HOH HOH A . C 2 HOH 107 207 170 HOH HOH A . C 2 HOH 108 208 111 HOH HOH A . D 2 HOH 1 101 172 HOH HOH B . D 2 HOH 2 102 179 HOH HOH B . D 2 HOH 3 103 192 HOH HOH B . D 2 HOH 4 104 165 HOH HOH B . D 2 HOH 5 105 153 HOH HOH B . D 2 HOH 6 106 67 HOH HOH B . D 2 HOH 7 107 75 HOH HOH B . D 2 HOH 8 108 64 HOH HOH B . D 2 HOH 9 109 149 HOH HOH B . D 2 HOH 10 110 59 HOH HOH B . D 2 HOH 11 111 83 HOH HOH B . D 2 HOH 12 112 116 HOH HOH B . D 2 HOH 13 113 1 HOH HOH B . D 2 HOH 14 114 131 HOH HOH B . D 2 HOH 15 115 8 HOH HOH B . D 2 HOH 16 116 26 HOH HOH B . D 2 HOH 17 117 104 HOH HOH B . D 2 HOH 18 118 128 HOH HOH B . D 2 HOH 19 119 45 HOH HOH B . D 2 HOH 20 120 19 HOH HOH B . D 2 HOH 21 121 82 HOH HOH B . D 2 HOH 22 122 43 HOH HOH B . D 2 HOH 23 123 13 HOH HOH B . D 2 HOH 24 124 101 HOH HOH B . D 2 HOH 25 125 125 HOH HOH B . D 2 HOH 26 126 34 HOH HOH B . D 2 HOH 27 127 169 HOH HOH B . D 2 HOH 28 128 145 HOH HOH B . D 2 HOH 29 129 133 HOH HOH B . D 2 HOH 30 130 18 HOH HOH B . D 2 HOH 31 131 109 HOH HOH B . D 2 HOH 32 132 40 HOH HOH B . D 2 HOH 33 133 162 HOH HOH B . D 2 HOH 34 134 23 HOH HOH B . D 2 HOH 35 135 38 HOH HOH B . D 2 HOH 36 136 114 HOH HOH B . D 2 HOH 37 137 184 HOH HOH B . D 2 HOH 38 138 55 HOH HOH B . D 2 HOH 39 139 81 HOH HOH B . D 2 HOH 40 140 191 HOH HOH B . D 2 HOH 41 141 47 HOH HOH B . D 2 HOH 42 142 10 HOH HOH B . D 2 HOH 43 143 17 HOH HOH B . D 2 HOH 44 144 2 HOH HOH B . D 2 HOH 45 145 121 HOH HOH B . D 2 HOH 46 146 122 HOH HOH B . D 2 HOH 47 147 44 HOH HOH B . D 2 HOH 48 148 42 HOH HOH B . D 2 HOH 49 149 21 HOH HOH B . D 2 HOH 50 150 71 HOH HOH B . D 2 HOH 51 151 117 HOH HOH B . D 2 HOH 52 152 84 HOH HOH B . D 2 HOH 53 153 94 HOH HOH B . D 2 HOH 54 154 181 HOH HOH B . D 2 HOH 55 155 202 HOH HOH B . D 2 HOH 56 156 142 HOH HOH B . D 2 HOH 57 157 98 HOH HOH B . D 2 HOH 58 158 61 HOH HOH B . D 2 HOH 59 159 196 HOH HOH B . D 2 HOH 60 160 62 HOH HOH B . D 2 HOH 61 161 57 HOH HOH B . D 2 HOH 62 162 39 HOH HOH B . D 2 HOH 63 163 90 HOH HOH B . D 2 HOH 64 164 193 HOH HOH B . D 2 HOH 65 165 185 HOH HOH B . D 2 HOH 66 166 136 HOH HOH B . D 2 HOH 67 167 132 HOH HOH B . D 2 HOH 68 168 180 HOH HOH B . D 2 HOH 69 169 11 HOH HOH B . D 2 HOH 70 170 204 HOH HOH B . D 2 HOH 71 171 89 HOH HOH B . D 2 HOH 72 172 187 HOH HOH B . D 2 HOH 73 173 134 HOH HOH B . D 2 HOH 74 174 129 HOH HOH B . D 2 HOH 75 175 52 HOH HOH B . D 2 HOH 76 176 199 HOH HOH B . D 2 HOH 77 177 118 HOH HOH B . D 2 HOH 78 178 194 HOH HOH B . D 2 HOH 79 179 175 HOH HOH B . D 2 HOH 80 180 160 HOH HOH B . D 2 HOH 81 181 203 HOH HOH B . D 2 HOH 82 182 31 HOH HOH B . D 2 HOH 83 183 88 HOH HOH B . D 2 HOH 84 184 115 HOH HOH B . D 2 HOH 85 185 79 HOH HOH B . D 2 HOH 86 186 171 HOH HOH B . D 2 HOH 87 187 30 HOH HOH B . D 2 HOH 88 188 138 HOH HOH B . D 2 HOH 89 189 189 HOH HOH B . D 2 HOH 90 190 100 HOH HOH B . D 2 HOH 91 191 183 HOH HOH B . D 2 HOH 92 192 205 HOH HOH B . D 2 HOH 93 193 157 HOH HOH B . D 2 HOH 94 194 130 HOH HOH B . D 2 HOH 95 195 167 HOH HOH B . D 2 HOH 96 196 108 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 REFMAC 5.8.0222 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.24 'Sep. 1, 2017' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? 5 PHASER . ? ? ? ? phasing ? ? ? # _cell.entry_id 5QU3 _cell.length_a 29.453 _cell.length_b 55.723 _cell.length_c 39.924 _cell.angle_alpha 90.000 _cell.angle_beta 98.700 _cell.angle_gamma 90.000 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QU3 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.crystals_number 1 _exptl.entry_id 5QU3 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.66 _exptl_crystal.density_percent_sol 25.81 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.1 M Tris/HCl pH 8.0, 0.15 M NaCl, 8% PEG 8000' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2018-05-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5QU3 _reflns.pdbx_redundancy 4.84 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 32.230 _reflns.d_resolution_high 1.020 _reflns.number_obs 59526 _reflns.number_all ? _reflns.percent_possible_obs 91.800 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.880 _reflns.B_iso_Wilson_estimate 17.574 _reflns.pdbx_Rrim_I_all 0.054 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_CC_half 0.999 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 288226 _reflns.pdbx_scaling_rejects 16 _reflns.pdbx_chi_squared 0.884 _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.020 1.050 14218 ? 3513 ? 3.718 0.290 ? ? 4.047 ? ? 4786 ? ? ? ? ? 73.400 4.264 ? 0.181 1 2 1.050 1.080 19330 ? 3904 ? 2.750 0.510 ? ? 4.951 ? ? 4631 ? ? ? ? ? 84.300 3.073 ? 0.408 1 3 1.080 1.110 19099 ? 3915 ? 1.777 0.810 ? ? 4.878 ? ? 4554 ? ? ? ? ? 86.000 1.990 ? 0.576 1 4 1.110 1.140 17532 ? 3844 ? 1.066 1.300 ? ? 4.561 ? ? 4407 ? ? ? ? ? 87.200 1.203 ? 0.772 1 5 1.140 1.180 19253 ? 3805 ? 0.756 1.990 ? ? 5.060 ? ? 4279 ? ? ? ? ? 88.900 0.844 ? 0.877 1 6 1.180 1.220 18537 ? 3714 ? 0.625 2.350 ? ? 4.991 ? ? 4088 ? ? ? ? ? 90.900 0.699 ? 0.904 1 7 1.220 1.270 17674 ? 3709 ? 0.467 3.050 ? ? 4.765 ? ? 3995 ? ? ? ? ? 92.800 0.524 ? 0.940 1 8 1.270 1.320 17352 ? 3585 ? 0.347 3.940 ? ? 4.840 ? ? 3818 ? ? ? ? ? 93.900 0.389 ? 0.970 1 9 1.320 1.380 17972 ? 3505 ? 0.265 5.430 ? ? 5.128 ? ? 3703 ? ? ? ? ? 94.700 0.295 ? 0.976 1 10 1.380 1.440 17230 ? 3391 ? 0.189 7.410 ? ? 5.081 ? ? 3508 ? ? ? ? ? 96.700 0.211 ? 0.987 1 11 1.440 1.520 15776 ? 3256 ? 0.137 9.530 ? ? 4.845 ? ? 3346 ? ? ? ? ? 97.300 0.153 ? 0.991 1 12 1.520 1.610 15257 ? 3094 ? 0.106 12.630 ? ? 4.931 ? ? 3170 ? ? ? ? ? 97.600 0.119 ? 0.993 1 13 1.610 1.720 15229 ? 2932 ? 0.086 15.990 ? ? 5.194 ? ? 2993 ? ? ? ? ? 98.000 0.096 ? 0.995 1 14 1.720 1.860 13652 ? 2720 ? 0.066 20.200 ? ? 5.019 ? ? 2765 ? ? ? ? ? 98.400 0.074 ? 0.997 1 15 1.860 2.040 11489 ? 2511 ? 0.052 24.320 ? ? 4.575 ? ? 2553 ? ? ? ? ? 98.400 0.059 ? 0.997 1 16 2.040 2.280 10440 ? 2312 ? 0.046 27.950 ? ? 4.516 ? ? 2348 ? ? ? ? ? 98.500 0.052 ? 0.997 1 17 2.280 2.630 9963 ? 2011 ? 0.042 31.460 ? ? 4.954 ? ? 2036 ? ? ? ? ? 98.800 0.047 ? 0.998 1 18 2.630 3.230 8223 ? 1713 ? 0.036 33.050 ? ? 4.800 ? ? 1730 ? ? ? ? ? 99.000 0.041 ? 0.998 1 19 3.230 4.560 6014 ? 1342 ? 0.031 33.970 ? ? 4.481 ? ? 1359 ? ? ? ? ? 98.700 0.035 ? 0.999 1 20 4.560 32.230 3986 ? 750 ? 0.027 37.300 ? ? 5.315 ? ? 764 ? ? ? ? ? 98.200 0.030 ? 0.998 # _refine.entry_id 5QU3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.0200 _refine.ls_d_res_low 32.2300 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 62.7700 _refine.ls_number_reflns_obs 38767 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1645 _refine.ls_R_factor_R_work 0.1632 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1888 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 2101 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 13.6410 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.9300 _refine.aniso_B[2][2] 0.3400 _refine.aniso_B[3][3] 0.5400 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.1000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9680 _refine.correlation_coeff_Fo_to_Fc_free 0.9580 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0430 _refine.pdbx_overall_ESU_R_Free 0.0420 _refine.overall_SU_ML 0.0300 _refine.overall_SU_B 1.4150 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'inhouse model' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 59.630 _refine.B_iso_min 5.140 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.0200 _refine_hist.d_res_low 32.2300 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 207 _refine_hist.number_atoms_total 1167 _refine_hist.pdbx_number_residues_total 113 _refine_hist.pdbx_B_iso_mean_solvent 30.41 _refine_hist.pdbx_number_atoms_protein 960 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1111 0.013 0.014 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1002 0.001 0.018 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1516 1.636 1.659 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2382 0.999 1.651 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 143 7.473 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 74 31.528 21.622 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 227 11.786 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 12 24.784 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 133 0.097 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1272 0.010 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 212 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2113 2.945 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 125 33.203 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 2162 11.113 5.000 ? ? # _refine_ls_shell.d_res_high 1.0180 _refine_ls_shell.d_res_low 1.0450 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 2.0700 _refine_ls_shell.number_reflns_R_work 93 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3650 _refine_ls_shell.R_factor_R_free 0.3310 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 6 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.number_reflns_all 99 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 5QU3 _struct.title 'Crystal Structure of domain swapped human Nck SH3.1, 1.01A, monoclinic' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5QU3 _struct_keywords.text 'SH3 DOMAIN, ADAPTOR, PEPTIDE BINDING, SIGNALING PROTEIN, DOMAIN SWAP' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NCK1_HUMAN _struct_ref.pdbx_db_accession P16333 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code EVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERK _struct_ref.pdbx_align_begin 4 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5QU3 A 27 ? 82 ? P16333 4 ? 59 ? 5 60 2 1 5QU3 B 27 ? 82 ? P16333 4 ? 59 ? 5 60 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5QU3 SER A 1 ? UNP P16333 ? ? 'expression tag' -21 1 1 5QU3 GLY A 2 ? UNP P16333 ? ? 'expression tag' -20 2 1 5QU3 GLY A 3 ? UNP P16333 ? ? 'expression tag' -19 3 1 5QU3 LEU A 4 ? UNP P16333 ? ? 'expression tag' -18 4 1 5QU3 ASN A 5 ? UNP P16333 ? ? 'expression tag' -17 5 1 5QU3 ASP A 6 ? UNP P16333 ? ? 'expression tag' -16 6 1 5QU3 ILE A 7 ? UNP P16333 ? ? 'expression tag' -15 7 1 5QU3 PHE A 8 ? UNP P16333 ? ? 'expression tag' -14 8 1 5QU3 GLU A 9 ? UNP P16333 ? ? 'expression tag' -13 9 1 5QU3 ALA A 10 ? UNP P16333 ? ? 'expression tag' -12 10 1 5QU3 GLN A 11 ? UNP P16333 ? ? 'expression tag' -11 11 1 5QU3 LYS A 12 ? UNP P16333 ? ? 'expression tag' -10 12 1 5QU3 ILE A 13 ? UNP P16333 ? ? 'expression tag' -9 13 1 5QU3 GLU A 14 ? UNP P16333 ? ? 'expression tag' -8 14 1 5QU3 TRP A 15 ? UNP P16333 ? ? 'expression tag' -7 15 1 5QU3 HIS A 16 ? UNP P16333 ? ? 'expression tag' -6 16 1 5QU3 GLU A 17 ? UNP P16333 ? ? 'expression tag' -5 17 1 5QU3 GLY A 18 ? UNP P16333 ? ? 'expression tag' -4 18 1 5QU3 SER A 19 ? UNP P16333 ? ? 'expression tag' -3 19 1 5QU3 GLU A 20 ? UNP P16333 ? ? 'expression tag' -2 20 1 5QU3 ASN A 21 ? UNP P16333 ? ? 'expression tag' -1 21 1 5QU3 LEU A 22 ? UNP P16333 ? ? 'expression tag' 0 22 1 5QU3 TYR A 23 ? UNP P16333 ? ? 'expression tag' 1 23 1 5QU3 PHE A 24 ? UNP P16333 ? ? 'expression tag' 2 24 1 5QU3 GLN A 25 ? UNP P16333 ? ? 'expression tag' 3 25 1 5QU3 SER A 26 ? UNP P16333 ? ? 'expression tag' 4 26 2 5QU3 SER B 1 ? UNP P16333 ? ? 'expression tag' -21 27 2 5QU3 GLY B 2 ? UNP P16333 ? ? 'expression tag' -20 28 2 5QU3 GLY B 3 ? UNP P16333 ? ? 'expression tag' -19 29 2 5QU3 LEU B 4 ? UNP P16333 ? ? 'expression tag' -18 30 2 5QU3 ASN B 5 ? UNP P16333 ? ? 'expression tag' -17 31 2 5QU3 ASP B 6 ? UNP P16333 ? ? 'expression tag' -16 32 2 5QU3 ILE B 7 ? UNP P16333 ? ? 'expression tag' -15 33 2 5QU3 PHE B 8 ? UNP P16333 ? ? 'expression tag' -14 34 2 5QU3 GLU B 9 ? UNP P16333 ? ? 'expression tag' -13 35 2 5QU3 ALA B 10 ? UNP P16333 ? ? 'expression tag' -12 36 2 5QU3 GLN B 11 ? UNP P16333 ? ? 'expression tag' -11 37 2 5QU3 LYS B 12 ? UNP P16333 ? ? 'expression tag' -10 38 2 5QU3 ILE B 13 ? UNP P16333 ? ? 'expression tag' -9 39 2 5QU3 GLU B 14 ? UNP P16333 ? ? 'expression tag' -8 40 2 5QU3 TRP B 15 ? UNP P16333 ? ? 'expression tag' -7 41 2 5QU3 HIS B 16 ? UNP P16333 ? ? 'expression tag' -6 42 2 5QU3 GLU B 17 ? UNP P16333 ? ? 'expression tag' -5 43 2 5QU3 GLY B 18 ? UNP P16333 ? ? 'expression tag' -4 44 2 5QU3 SER B 19 ? UNP P16333 ? ? 'expression tag' -3 45 2 5QU3 GLU B 20 ? UNP P16333 ? ? 'expression tag' -2 46 2 5QU3 ASN B 21 ? UNP P16333 ? ? 'expression tag' -1 47 2 5QU3 LEU B 22 ? UNP P16333 ? ? 'expression tag' 0 48 2 5QU3 TYR B 23 ? UNP P16333 ? ? 'expression tag' 1 49 2 5QU3 PHE B 24 ? UNP P16333 ? ? 'expression tag' 2 50 2 5QU3 GLN B 25 ? UNP P16333 ? ? 'expression tag' 3 51 2 5QU3 SER B 26 ? UNP P16333 ? ? 'expression tag' 4 52 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4180 ? 1 MORE -25 ? 1 'SSA (A^2)' 7080 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'elutes as a dimer' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR B 71 ? PRO B 75 ? THR B 49 PRO B 53 AA1 2 TRP B 61 ? ARG B 65 ? TRP B 39 ARG B 43 AA1 3 ARG A 51 ? LEU A 54 ? ARG A 29 LEU A 32 AA1 4 VAL A 28 ? ALA A 32 ? VAL A 6 ALA A 10 AA1 5 VAL B 79 ? GLU B 80 ? VAL B 57 GLU B 58 AA2 1 THR A 71 ? PRO A 75 ? THR A 49 PRO A 53 AA2 2 TRP A 61 ? ARG A 65 ? TRP A 39 ARG A 43 AA2 3 ARG B 51 ? LEU B 54 ? ARG B 29 LEU B 32 AA2 4 VAL B 28 ? ALA B 32 ? VAL B 6 ALA B 10 AA2 5 VAL A 79 ? GLU A 80 ? VAL A 57 GLU A 58 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLY B 72 ? O GLY B 50 N VAL B 64 ? N VAL B 42 AA1 2 3 O ARG B 65 ? O ARG B 43 N TRP A 53 ? N TRP A 31 AA1 3 4 O LEU A 54 ? O LEU A 32 N VAL A 28 ? N VAL A 6 AA1 4 5 N VAL A 31 ? N VAL A 9 O GLU B 80 ? O GLU B 58 AA2 1 2 O GLY A 72 ? O GLY A 50 N VAL A 64 ? N VAL A 42 AA2 2 3 N ARG A 65 ? N ARG A 43 O TRP B 53 ? O TRP B 31 AA2 3 4 O LEU B 54 ? O LEU B 32 N VAL B 28 ? N VAL B 6 AA2 4 5 O VAL B 31 ? O VAL B 9 N GLU A 80 ? N GLU A 58 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 59 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 A _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 59 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 A _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 59 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 A _pdbx_validate_rmsd_angle.angle_value 117.13 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.17 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 27 ? ? 77.52 -4.53 2 1 ASN B 27 ? ? 76.64 -3.65 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 59 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id A _pdbx_validate_planes.rmsd 0.099 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 207 ? 5.94 . 2 1 O ? A HOH 208 ? 6.10 . 3 1 O ? B HOH 196 ? 6.31 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -21 ? A SER 1 2 1 Y 1 A GLY -20 ? A GLY 2 3 1 Y 1 A GLY -19 ? A GLY 3 4 1 Y 1 A LEU -18 ? A LEU 4 5 1 Y 1 A ASN -17 ? A ASN 5 6 1 Y 1 A ASP -16 ? A ASP 6 7 1 Y 1 A ILE -15 ? A ILE 7 8 1 Y 1 A PHE -14 ? A PHE 8 9 1 Y 1 A GLU -13 ? A GLU 9 10 1 Y 1 A ALA -12 ? A ALA 10 11 1 Y 1 A GLN -11 ? A GLN 11 12 1 Y 1 A LYS -10 ? A LYS 12 13 1 Y 1 A ILE -9 ? A ILE 13 14 1 Y 1 A GLU -8 ? A GLU 14 15 1 Y 1 A TRP -7 ? A TRP 15 16 1 Y 1 A HIS -6 ? A HIS 16 17 1 Y 1 A GLU -5 ? A GLU 17 18 1 Y 1 A GLY -4 ? A GLY 18 19 1 Y 1 A SER -3 ? A SER 19 20 1 Y 1 A GLU -2 ? A GLU 20 21 1 Y 1 A ASN -1 ? A ASN 21 22 1 Y 1 A LEU 0 ? A LEU 22 23 1 Y 1 A TYR 1 ? A TYR 23 24 1 Y 1 A PHE 2 ? A PHE 24 25 1 Y 1 A GLN 3 ? A GLN 25 26 1 Y 1 B SER -21 ? B SER 1 27 1 Y 1 B GLY -20 ? B GLY 2 28 1 Y 1 B GLY -19 ? B GLY 3 29 1 Y 1 B LEU -18 ? B LEU 4 30 1 Y 1 B ASN -17 ? B ASN 5 31 1 Y 1 B ASP -16 ? B ASP 6 32 1 Y 1 B ILE -15 ? B ILE 7 33 1 Y 1 B PHE -14 ? B PHE 8 34 1 Y 1 B GLU -13 ? B GLU 9 35 1 Y 1 B ALA -12 ? B ALA 10 36 1 Y 1 B GLN -11 ? B GLN 11 37 1 Y 1 B LYS -10 ? B LYS 12 38 1 Y 1 B ILE -9 ? B ILE 13 39 1 Y 1 B GLU -8 ? B GLU 14 40 1 Y 1 B TRP -7 ? B TRP 15 41 1 Y 1 B HIS -6 ? B HIS 16 42 1 Y 1 B GLU -5 ? B GLU 17 43 1 Y 1 B GLY -4 ? B GLY 18 44 1 Y 1 B SER -3 ? B SER 19 45 1 Y 1 B GLU -2 ? B GLU 20 46 1 Y 1 B ASN -1 ? B ASN 21 47 1 Y 1 B LEU 0 ? B LEU 22 48 1 Y 1 B TYR 1 ? B TYR 23 49 1 Y 1 B PHE 2 ? B PHE 24 50 1 Y 1 B GLN 3 ? B GLN 25 51 1 Y 1 B LYS 60 ? B LYS 82 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 THR N N N N 290 THR CA C N S 291 THR C C N N 292 THR O O N N 293 THR CB C N R 294 THR OG1 O N N 295 THR CG2 C N N 296 THR OXT O N N 297 THR H H N N 298 THR H2 H N N 299 THR HA H N N 300 THR HB H N N 301 THR HG1 H N N 302 THR HG21 H N N 303 THR HG22 H N N 304 THR HG23 H N N 305 THR HXT H N N 306 TRP N N N N 307 TRP CA C N S 308 TRP C C N N 309 TRP O O N N 310 TRP CB C N N 311 TRP CG C Y N 312 TRP CD1 C Y N 313 TRP CD2 C Y N 314 TRP NE1 N Y N 315 TRP CE2 C Y N 316 TRP CE3 C Y N 317 TRP CZ2 C Y N 318 TRP CZ3 C Y N 319 TRP CH2 C Y N 320 TRP OXT O N N 321 TRP H H N N 322 TRP H2 H N N 323 TRP HA H N N 324 TRP HB2 H N N 325 TRP HB3 H N N 326 TRP HD1 H N N 327 TRP HE1 H N N 328 TRP HE3 H N N 329 TRP HZ2 H N N 330 TRP HZ3 H N N 331 TRP HH2 H N N 332 TRP HXT H N N 333 TYR N N N N 334 TYR CA C N S 335 TYR C C N N 336 TYR O O N N 337 TYR CB C N N 338 TYR CG C Y N 339 TYR CD1 C Y N 340 TYR CD2 C Y N 341 TYR CE1 C Y N 342 TYR CE2 C Y N 343 TYR CZ C Y N 344 TYR OH O N N 345 TYR OXT O N N 346 TYR H H N N 347 TYR H2 H N N 348 TYR HA H N N 349 TYR HB2 H N N 350 TYR HB3 H N N 351 TYR HD1 H N N 352 TYR HD2 H N N 353 TYR HE1 H N N 354 TYR HE2 H N N 355 TYR HH H N N 356 TYR HXT H N N 357 VAL N N N N 358 VAL CA C N S 359 VAL C C N N 360 VAL O O N N 361 VAL CB C N N 362 VAL CG1 C N N 363 VAL CG2 C N N 364 VAL OXT O N N 365 VAL H H N N 366 VAL H2 H N N 367 VAL HA H N N 368 VAL HB H N N 369 VAL HG11 H N N 370 VAL HG12 H N N 371 VAL HG13 H N N 372 VAL HG21 H N N 373 VAL HG22 H N N 374 VAL HG23 H N N 375 VAL HXT H N N 376 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 # _pdbx_deposit_group.group_id G_1002110 _pdbx_deposit_group.group_description ;Monomeric and dimeric, as well as peptide-bound structures of the first SH3 domain of the human adapter protein Nck1 were determined. ; _pdbx_deposit_group.group_title 'structural plasticity of the Nck1-SH3.1 domain' _pdbx_deposit_group.group_type undefined # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details 'inhouse model' # _atom_sites.entry_id 5QU3 _atom_sites.fract_transf_matrix[1][1] 0.033952 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005193 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017946 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025339 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_