HEADER HYDROLASE/TRANSFERASE 13-DEC-19 5QU9 TITLE PANDDA ANALYSIS GROUP DEPOSITION OF GROUND-STATE MODEL OF KALIRIN/RAC1 TITLE 2 SCREENED AGAINST A CUSTOMIZED UREA FRAGMENT LIBRARY BY X-RAY TITLE 3 CRYSTALLOGRAPHY AT THE XCHEM FACILITY OF DIAMOND LIGHT SOURCE TITLE 4 BEAMLINE I04-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELL MIGRATION-INDUCING GENE 5 PROTEIN,RAS-LIKE PROTEIN COMPND 5 TC25,P21-RAC1; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: KALIRIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: HUNTINGTIN-ASSOCIATED PROTEIN-INTERACTING PROTEIN,PROTEIN COMPND 12 DUO,SERINE/THREONINE-PROTEIN KINASE WITH DBL- AND PLECKSTRIN HOMOLOGY COMPND 13 DOMAIN; COMPND 14 EC: 2.7.11.1; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAC1, TC25, MIG5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: KALRN, DUET, DUO, HAPIP, TRAD; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SGC - DIAMOND I04-1 FRAGMENT SCREENING, XCHEMEXPLORER, HYDROLASE- KEYWDS 2 TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.L.GRAY,T.KROJER,R.TALON,A.DOUANGAMATH,C.JIMENEZ ANTUNEZ,C.BOUNTRA, AUTHOR 2 C.H.ARROWSMITH,A.EDWARDS,P.E.BRENNAN,F.VON DELFT REVDAT 2 06-MAR-24 5QU9 1 REMARK REVDAT 1 29-JAN-20 5QU9 0 JRNL AUTH J.L.GRAY,T.KROJER,R.TALON,A.DOUANGAMATH,C.JIMENEZ ANTUNEZ, JRNL AUTH 2 C.BOUNTRA,C.H.ARROWSMITH,A.EDWARDS,P.E.BRENNAN,F.VON DELFT JRNL TITL PANDDA ANALYSIS GROUP DEPOSITION OF GROUND-STATE MODEL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 29194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.0283 - 4.3084 1.00 3094 164 0.1693 0.2092 REMARK 3 2 4.3084 - 3.4198 1.00 2864 139 0.1632 0.2197 REMARK 3 3 3.4198 - 2.9876 0.99 2786 169 0.1923 0.2403 REMARK 3 4 2.9876 - 2.7144 1.00 2768 142 0.2032 0.2343 REMARK 3 5 2.7144 - 2.5199 0.99 2726 146 0.1917 0.2010 REMARK 3 6 2.5199 - 2.3713 0.99 2727 134 0.1968 0.2418 REMARK 3 7 2.3713 - 2.2526 0.99 2732 120 0.1921 0.2661 REMARK 3 8 2.2526 - 2.1545 1.00 2696 146 0.1983 0.2457 REMARK 3 9 2.1545 - 2.0716 0.99 2698 134 0.1998 0.2807 REMARK 3 10 2.0716 - 2.0001 0.99 2662 147 0.2194 0.2826 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2866 REMARK 3 ANGLE : 0.893 3903 REMARK 3 CHIRALITY : 0.055 447 REMARK 3 PLANARITY : 0.006 495 REMARK 3 DIHEDRAL : 10.396 1711 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2659 14.9342 17.3451 REMARK 3 T TENSOR REMARK 3 T11: 0.1379 T22: 0.1692 REMARK 3 T33: 0.1449 T12: 0.0355 REMARK 3 T13: 0.0218 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.0210 L22: 0.0408 REMARK 3 L33: 0.0069 L12: 0.0002 REMARK 3 L13: -0.0076 L23: 0.0036 REMARK 3 S TENSOR REMARK 3 S11: -0.0905 S12: 0.0700 S13: -0.0522 REMARK 3 S21: -0.0674 S22: -0.0334 S23: 0.1043 REMARK 3 S31: 0.0379 S32: -0.0554 S33: 0.0005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5644 5.9249 23.4889 REMARK 3 T TENSOR REMARK 3 T11: 0.0896 T22: 0.2701 REMARK 3 T33: 0.1745 T12: 0.0799 REMARK 3 T13: 0.0219 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 0.0473 L22: 0.1379 REMARK 3 L33: 0.0642 L12: 0.0128 REMARK 3 L13: 0.0450 L23: 0.0593 REMARK 3 S TENSOR REMARK 3 S11: -0.0491 S12: 0.0177 S13: -0.0940 REMARK 3 S21: -0.0535 S22: -0.0774 S23: 0.1188 REMARK 3 S31: 0.0129 S32: 0.0984 S33: -0.0585 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5839 15.8580 13.3072 REMARK 3 T TENSOR REMARK 3 T11: 0.1044 T22: 0.2107 REMARK 3 T33: 0.1560 T12: 0.0612 REMARK 3 T13: 0.0126 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.0569 L22: 0.0799 REMARK 3 L33: 0.0317 L12: -0.0668 REMARK 3 L13: 0.0073 L23: -0.0269 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: 0.0916 S13: 0.0454 REMARK 3 S21: -0.0381 S22: -0.1256 S23: 0.1031 REMARK 3 S31: -0.0826 S32: -0.0545 S33: -0.0342 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2180 26.1183 25.2087 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.1311 REMARK 3 T33: 0.1592 T12: 0.0647 REMARK 3 T13: 0.0292 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 0.2366 L22: 0.1944 REMARK 3 L33: 0.0624 L12: 0.0928 REMARK 3 L13: 0.0031 L23: -0.0105 REMARK 3 S TENSOR REMARK 3 S11: 0.0791 S12: -0.0001 S13: 0.1483 REMARK 3 S21: -0.0011 S22: -0.0587 S23: -0.0213 REMARK 3 S31: -0.0633 S32: 0.0092 S33: -0.0308 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3323 17.8950 18.3265 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.2048 REMARK 3 T33: 0.1753 T12: 0.0567 REMARK 3 T13: -0.0187 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.1031 L22: 0.0971 REMARK 3 L33: 0.2206 L12: -0.0959 REMARK 3 L13: -0.0791 L23: 0.0748 REMARK 3 S TENSOR REMARK 3 S11: -0.0404 S12: 0.1681 S13: -0.1489 REMARK 3 S21: 0.0323 S22: -0.0598 S23: 0.1731 REMARK 3 S31: -0.0098 S32: -0.1289 S33: -0.0522 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1232 THROUGH 1257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2712 1.8820 17.9210 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.2701 REMARK 3 T33: 0.1384 T12: 0.0957 REMARK 3 T13: 0.0044 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.0499 L22: 0.0344 REMARK 3 L33: 0.0089 L12: -0.0120 REMARK 3 L13: -0.0191 L23: -0.0026 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: 0.0434 S13: -0.2201 REMARK 3 S21: -0.0435 S22: -0.0163 S23: 0.0982 REMARK 3 S31: 0.0364 S32: -0.0040 S33: 0.0434 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1258 THROUGH 1277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5480 12.1481 -8.1583 REMARK 3 T TENSOR REMARK 3 T11: 0.3822 T22: 0.7134 REMARK 3 T33: -0.0684 T12: 0.1678 REMARK 3 T13: 0.0635 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.0262 L22: 0.0065 REMARK 3 L33: 0.0590 L12: -0.0074 REMARK 3 L13: 0.0150 L23: -0.0210 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: -0.0065 S13: 0.0049 REMARK 3 S21: -0.0586 S22: 0.0563 S23: -0.0266 REMARK 3 S31: 0.0214 S32: -0.0105 S33: 0.0874 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1278 THROUGH 1284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6824 16.4421 1.4096 REMARK 3 T TENSOR REMARK 3 T11: 0.2311 T22: 0.4461 REMARK 3 T33: 0.1510 T12: 0.0891 REMARK 3 T13: 0.1523 T23: 0.1543 REMARK 3 L TENSOR REMARK 3 L11: 0.0398 L22: 0.0166 REMARK 3 L33: 0.0341 L12: 0.0033 REMARK 3 L13: -0.0017 L23: 0.0229 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: -0.0135 S13: 0.0196 REMARK 3 S21: 0.0011 S22: -0.0033 S23: -0.0171 REMARK 3 S31: 0.0011 S32: 0.0008 S33: 0.0058 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1285 THROUGH 1341 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0825 9.7740 15.8047 REMARK 3 T TENSOR REMARK 3 T11: -0.0479 T22: 0.3234 REMARK 3 T33: 0.1543 T12: 0.1021 REMARK 3 T13: 0.0898 T23: 0.0782 REMARK 3 L TENSOR REMARK 3 L11: 0.1778 L22: 0.0777 REMARK 3 L33: 0.2243 L12: -0.0796 REMARK 3 L13: -0.0604 L23: 0.0705 REMARK 3 S TENSOR REMARK 3 S11: 0.2254 S12: 0.1238 S13: 0.0722 REMARK 3 S21: 0.0820 S22: 0.0779 S23: -0.1324 REMARK 3 S31: -0.0631 S32: 0.0721 S33: 0.5194 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1342 THROUGH 1381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8257 11.3401 10.3411 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.3868 REMARK 3 T33: 0.0742 T12: 0.1280 REMARK 3 T13: -0.0067 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0200 L22: 0.1747 REMARK 3 L33: 0.0195 L12: -0.0172 REMARK 3 L13: -0.0148 L23: -0.0623 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: 0.2558 S13: -0.0388 REMARK 3 S21: -0.1311 S22: -0.0262 S23: 0.1696 REMARK 3 S31: -0.0401 S32: -0.0487 S33: 0.0887 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1382 THROUGH 1388 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2890 5.5868 39.7777 REMARK 3 T TENSOR REMARK 3 T11: 0.3572 T22: 0.5558 REMARK 3 T33: 0.2607 T12: 0.1471 REMARK 3 T13: -0.0064 T23: 0.0454 REMARK 3 L TENSOR REMARK 3 L11: 0.0263 L22: -0.0003 REMARK 3 L33: 0.0093 L12: -0.0027 REMARK 3 L13: 0.0110 L23: -0.0018 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: 0.0146 S13: -0.0039 REMARK 3 S21: 0.0349 S22: 0.0139 S23: -0.0221 REMARK 3 S31: -0.0025 S32: -0.0209 S33: -0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1389 THROUGH 1410 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0010 18.2675 25.3064 REMARK 3 T TENSOR REMARK 3 T11: 0.2124 T22: 0.2834 REMARK 3 T33: 0.2870 T12: -0.0046 REMARK 3 T13: -0.0217 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.0130 L22: 0.0261 REMARK 3 L33: 0.0358 L12: 0.0192 REMARK 3 L13: -0.0177 L23: -0.0215 REMARK 3 S TENSOR REMARK 3 S11: 0.1022 S12: 0.0636 S13: 0.2855 REMARK 3 S21: 0.0402 S22: 0.1173 S23: -0.0556 REMARK 3 S31: -0.0429 S32: 0.0550 S33: 0.0032 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5QU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1001402414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32694 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 342.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 33.90 REMARK 200 R MERGE (I) : 0.51400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.40 REMARK 200 R MERGE FOR SHELL (I) : 2.69100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5O33 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 5.5 24% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 230.61867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.30933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 172.96400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.65467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 288.27333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 230.61867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 115.30933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 57.65467 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 172.96400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 288.27333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1599 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1639 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 SER B 1230 REMARK 465 MET B 1231 REMARK 465 VAL B 1411 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 MET A 45 CG SD CE REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 LYS A 130 CE NZ REMARK 470 LYS A 132 CE NZ REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS B1234 NZ REMARK 470 PHE B1236 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B1269 CG CD OE1 OE2 REMARK 470 LYS B1277 NZ REMARK 470 LYS B1298 CE NZ REMARK 470 LYS B1329 NZ REMARK 470 GLU B1348 CG CD OE1 OE2 REMARK 470 GLN B1351 CG CD OE1 NE2 REMARK 470 GLU B1385 CG CD OE1 OE2 REMARK 470 GLU B1386 CG CD OE1 OE2 REMARK 470 LYS B1388 CG CD CE NZ REMARK 470 LYS B1392 CG CD CE NZ REMARK 470 GLU B1396 CG CD OE1 OE2 REMARK 470 LYS B1403 NZ REMARK 470 HIS B1410 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 335 O HOH A 396 1.88 REMARK 500 O HOH B 1508 O HOH B 1511 1.94 REMARK 500 O GLY B 1387 O HOH B 1501 1.97 REMARK 500 O GLN B 1351 O HOH B 1502 1.97 REMARK 500 O HOH B 1619 O HOH B 1627 1.98 REMARK 500 OE2 GLU B 1308 O HOH B 1503 2.15 REMARK 500 NH1 ARG A 163 O HOH A 301 2.17 REMARK 500 O HOH A 413 O HOH B 1633 2.18 REMARK 500 OD1 ASN B 1293 O HOH B 1504 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 374 O HOH A 374 10665 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 96 -53.82 -128.35 REMARK 500 THR B1258 -75.92 -115.42 REMARK 500 GLU B1268 -147.33 -142.62 REMARK 500 ILE B1295 -60.76 -123.31 REMARK 500 HIS B1341 -10.21 -141.50 REMARK 500 CYS B1383 15.87 -143.56 REMARK 500 GLU B1385 -101.47 -66.77 REMARK 500 GLU B1386 -1.78 -153.35 REMARK 500 GLU B1390 35.48 -83.82 REMARK 500 LEU B1391 -43.20 -134.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 485 DISTANCE = 6.64 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 DBREF 5QU9 A 1 177 UNP P63000 RAC1_HUMAN 1 177 DBREF 5QU9 B 1232 1411 UNP O60229 KALRN_HUMAN 1280 1459 SEQADV 5QU9 SER A 0 UNP P63000 EXPRESSION TAG SEQADV 5QU9 SER B 1230 UNP O60229 EXPRESSION TAG SEQADV 5QU9 MET B 1231 UNP O60229 EXPRESSION TAG SEQADV 5QU9 VAL B 1370 UNP O60229 ILE 1418 CONFLICT SEQRES 1 A 178 SER MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY SEQRES 2 A 178 ALA VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR SEQRES 3 A 178 ASN ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP SEQRES 4 A 178 ASN TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL SEQRES 5 A 178 ASN LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR SEQRES 6 A 178 ASP ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL SEQRES 7 A 178 PHE LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE SEQRES 8 A 178 GLU ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS SEQRES 9 A 178 HIS CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS SEQRES 10 A 178 LEU ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU SEQRES 11 A 178 LYS GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY SEQRES 12 A 178 LEU ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU SEQRES 13 A 178 GLU CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL SEQRES 14 A 178 PHE ASP GLU ALA ILE ARG ALA VAL LEU SEQRES 1 B 182 SER MET ARG LYS LYS GLU PHE ILE MET ALA GLU LEU LEU SEQRES 2 B 182 GLN THR GLU LYS ALA TYR VAL ARG ASP LEU HIS GLU CYS SEQRES 3 B 182 LEU GLU THR TYR LEU TRP GLU MET THR SER GLY VAL GLU SEQRES 4 B 182 GLU ILE PRO PRO GLY ILE LEU ASN LYS GLU HIS ILE ILE SEQRES 5 B 182 PHE GLY ASN ILE GLN GLU ILE TYR ASP PHE HIS ASN ASN SEQRES 6 B 182 ILE PHE LEU LYS GLU LEU GLU LYS TYR GLU GLN LEU PRO SEQRES 7 B 182 GLU ASP VAL GLY HIS CYS PHE VAL THR TRP ALA ASP LYS SEQRES 8 B 182 PHE GLN MET TYR VAL THR TYR CYS LYS ASN LYS PRO ASP SEQRES 9 B 182 SER ASN GLN LEU ILE LEU GLU HIS ALA GLY THR PHE PHE SEQRES 10 B 182 ASP GLU ILE GLN GLN ARG HIS GLY LEU ALA ASN SER ILE SEQRES 11 B 182 SER SER TYR LEU ILE LYS PRO VAL GLN ARG VAL THR LYS SEQRES 12 B 182 TYR GLN LEU LEU LEU LYS GLU LEU LEU THR CYS CYS GLU SEQRES 13 B 182 GLU GLY LYS GLY GLU LEU LYS ASP GLY LEU GLU VAL MET SEQRES 14 B 182 LEU SER VAL PRO LYS LYS ALA ASN ASP ALA MET HIS VAL HET EDO A 201 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *341(H2 O) HELIX 1 AA1 GLY A 12 VAL A 14 5 3 HELIX 2 AA2 GLY A 15 ASN A 26 1 12 HELIX 3 AA3 LEU A 67 TYR A 72 5 6 HELIX 4 AA4 SER A 86 LYS A 96 1 11 HELIX 5 AA5 LYS A 96 CYS A 105 1 10 HELIX 6 AA6 LYS A 116 ARG A 120 5 5 HELIX 7 AA7 ASP A 122 GLU A 131 1 10 HELIX 8 AA8 THR A 138 GLY A 150 1 13 HELIX 9 AA9 GLY A 164 LEU A 177 1 14 HELIX 10 AB1 LYS B 1233 GLY B 1266 1 34 HELIX 11 AB2 LYS B 1277 GLY B 1283 1 7 HELIX 12 AB3 ASN B 1284 ILE B 1295 1 12 HELIX 13 AB4 ILE B 1295 TYR B 1303 1 9 HELIX 14 AB5 LEU B 1306 ASP B 1309 5 4 HELIX 15 AB6 VAL B 1310 TRP B 1317 1 8 HELIX 16 AB7 ALA B 1318 PHE B 1321 5 4 HELIX 17 AB8 GLN B 1322 ALA B 1342 1 21 HELIX 18 AB9 THR B 1344 GLY B 1354 1 11 HELIX 19 AC1 SER B 1358 ILE B 1364 1 7 HELIX 20 AC2 ILE B 1364 THR B 1382 1 19 HELIX 21 AC3 LYS B 1388 MET B 1409 1 22 SHEET 1 AA1 6 TYR A 40 MET A 45 0 SHEET 2 AA1 6 PRO A 50 TRP A 56 -1 O VAL A 51 N VAL A 44 SHEET 3 AA1 6 ALA A 3 GLY A 10 1 N ILE A 4 O GLY A 54 SHEET 4 AA1 6 VAL A 77 SER A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 ILE A 110 THR A 115 1 O THR A 115 N PHE A 82 SHEET 6 AA1 6 LYS A 153 GLU A 156 1 O LEU A 155 N GLY A 114 SITE 1 AC1 3 ASP A 121 HOH A 326 HOH A 343 CRYST1 63.517 63.517 345.928 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015744 0.009090 0.000000 0.00000 SCALE2 0.000000 0.018179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002891 0.00000