HEADER SPLICING 29-MAR-20 5QZZ TITLE PANDDA ANALYSIS GROUP DEPOSITION -- AUTO-REFINED DATA OF AAR2/RNASEH TITLE 2 FOR GROUND STATE MODEL 50 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: YPRP8 RNASEH (UNP RESIDUES 1835-2096); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: A1 CISTRON-SPLICING FACTOR AAR2; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: GAMA - AAR2(1-152) - SSSSS - AAR2(171-317); COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: PRP8, DBF3, DNA39, RNA8, SLT21, USA2, YHR165C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 12 S288C); SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: AAR2, YBL074C, YBL06.06, YBL0611; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FRAGMAX, FRAGMAXAPP, FRAGMENT SCREENING, RNASEH LIKE DOMAIN, VHS LIKE KEYWDS 2 DOMAIN, U5 SNRNP ASSEMBLY, SPLICING, F2X-ENTRY EXPDTA X-RAY DIFFRACTION AUTHOR M.S.WEISS,J.WOLLENHAUPT,A.METZ,T.BARTHEL,G.M.A.LIMA,A.HEINE, AUTHOR 2 U.MUELLER,G.KLEBE REVDAT 2 06-MAR-24 5QZZ 1 REMARK REVDAT 1 10-JUN-20 5QZZ 0 JRNL AUTH J.WOLLENHAUPT,A.METZ,T.BARTHEL,G.M.A.LIMA,A.HEINE,U.MUELLER, JRNL AUTH 2 G.KLEBE,M.S.WEISS JRNL TITL F2X-UNIVERSAL AND F2X-ENTRY: STRUCTURALLY DIVERSE COMPOUND JRNL TITL 2 LIBRARIES FOR CRYSTALLOGRAPHIC FRAGMENT SCREENING. JRNL REF STRUCTURE V. 28 694 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 32413289 JRNL DOI 10.1016/J.STR.2020.04.019 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 78826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4130 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5141 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2471 REMARK 3 BIN FREE R VALUE SET COUNT : 4130 REMARK 3 BIN FREE R VALUE : 0.2486 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4402 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.52000 REMARK 3 B22 (A**2) : -1.18000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.34000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.370 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4708 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4269 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6402 ; 1.530 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9960 ; 1.380 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 577 ; 6.930 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 250 ;35.010 ;23.360 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 847 ;13.879 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.419 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5297 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1002 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2249 ; 2.959 ; 3.473 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2248 ; 2.959 ; 3.472 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2841 ; 4.141 ; 5.186 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5QZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1001402597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.827 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78826 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 44.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 6.711 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 0.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.19 REMARK 200 R MERGE FOR SHELL (I) : 2.68100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0238 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% (W/V) PEG 4000, 3% (V/V) DMSO, REMARK 280 0.1M TRIS-HCL PH 8.5, 0.2M LI2SO4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.38000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.98800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.38000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.98800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 2070 REMARK 465 ILE A 2071 REMARK 465 SER A 2072 REMARK 465 ALA A 2073 REMARK 465 LEU A 2074 REMARK 465 THR A 2075 REMARK 465 GLN A 2076 REMARK 465 THR A 2077 REMARK 465 GLU A 2078 REMARK 465 ILE A 2079 REMARK 465 LYS A 2080 REMARK 465 ASP A 2081 REMARK 465 ILE A 2082 REMARK 465 ILE A 2083 REMARK 465 LEU A 2084 REMARK 465 GLY A 2085 REMARK 465 GLN A 2086 REMARK 465 ASN A 2087 REMARK 465 ILE A 2088 REMARK 465 LYS A 2089 REMARK 465 ALA A 2090 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 SER B 166 REMARK 465 SER B 167 REMARK 465 SER B 168 REMARK 465 SER B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A2068 CB CG OD1 ND2 REMARK 470 VAL A2069 CG1 CG2 REMARK 470 LEU B 152 CG CD1 CD2 REMARK 470 SER B 170 OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN B 230 CA CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2101 O HOH A 2113 1.50 REMARK 500 C VAL A 2069 O HOH A 2101 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 123 CG - SD - CE ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1836 -157.06 -133.01 REMARK 500 PRO A1964 36.29 -86.25 REMARK 500 ASP A1993 -121.93 45.60 REMARK 500 ASP B 18 -128.87 51.75 REMARK 500 ASN B 51 89.31 -165.27 REMARK 500 MET B 54 90.44 58.12 REMARK 500 MET B 54 89.07 53.38 REMARK 500 LYS B 132 80.74 -151.89 REMARK 500 ASP B 171 101.94 -56.63 REMARK 500 HIS B 174 34.25 -99.89 REMARK 500 LYS B 184 59.43 -114.15 REMARK 500 LYS B 215 -33.76 73.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET B 54 ARG B 55 146.66 REMARK 500 MET B 54 ARG B 55 149.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 441 DISTANCE = 6.28 ANGSTROMS DBREF 5QZZ A 1836 2090 UNP P33334 PRP8_YEAST 1836 2090 DBREF 5QZZ B 1 152 UNP P32357 AAR2_YEAST 1 152 DBREF 5QZZ B 171 317 UNP P32357 AAR2_YEAST 171 317 SEQADV 5QZZ GLY A 1833 UNP P33334 EXPRESSION TAG SEQADV 5QZZ ALA A 1834 UNP P33334 EXPRESSION TAG SEQADV 5QZZ MET A 1835 UNP P33334 EXPRESSION TAG SEQADV 5QZZ GLY B -3 UNP P32357 EXPRESSION TAG SEQADV 5QZZ ALA B -2 UNP P32357 EXPRESSION TAG SEQADV 5QZZ MET B -1 UNP P32357 EXPRESSION TAG SEQADV 5QZZ ALA B 0 UNP P32357 EXPRESSION TAG SEQADV 5QZZ SER B 166 UNP P32357 LINKER SEQADV 5QZZ SER B 167 UNP P32357 LINKER SEQADV 5QZZ SER B 168 UNP P32357 LINKER SEQADV 5QZZ SER B 169 UNP P32357 LINKER SEQADV 5QZZ SER B 170 UNP P32357 LINKER SEQRES 1 A 258 GLY ALA MET ASN SER SER ASN TYR ALA GLU LEU PHE ASN SEQRES 2 A 258 ASN ASP ILE LYS LEU PHE VAL ASP ASP THR ASN VAL TYR SEQRES 3 A 258 ARG VAL THR VAL HIS LYS THR PHE GLU GLY ASN VAL ALA SEQRES 4 A 258 THR LYS ALA ILE ASN GLY CYS ILE PHE THR LEU ASN PRO SEQRES 5 A 258 LYS THR GLY HIS LEU PHE LEU LYS ILE ILE HIS THR SER SEQRES 6 A 258 VAL TRP ALA GLY GLN LYS ARG LEU SER GLN LEU ALA LYS SEQRES 7 A 258 TRP LYS THR ALA GLU GLU VAL SER ALA LEU VAL ARG SER SEQRES 8 A 258 LEU PRO LYS GLU GLU GLN PRO LYS GLN ILE ILE VAL THR SEQRES 9 A 258 ARG LYS ALA MET LEU ASP PRO LEU GLU VAL HIS MET LEU SEQRES 10 A 258 ASP PHE PRO ASN ILE ALA ILE ARG PRO THR GLU LEU ARG SEQRES 11 A 258 LEU PRO PHE SER ALA ALA MET SER ILE ASP LYS LEU SER SEQRES 12 A 258 ASP VAL VAL MET LYS ALA THR GLU PRO GLN MET VAL LEU SEQRES 13 A 258 PHE ASN ILE TYR ASP ASP TRP LEU ASP ARG ILE SER SER SEQRES 14 A 258 TYR THR ALA PHE SER ARG LEU THR LEU LEU LEU ARG ALA SEQRES 15 A 258 LEU LYS THR ASN GLU GLU SER ALA LYS MET ILE LEU LEU SEQRES 16 A 258 SER ASP PRO THR ILE THR ILE LYS SER TYR HIS LEU TRP SEQRES 17 A 258 PRO SER PHE THR ASP GLU GLN TRP ILE THR ILE GLU SER SEQRES 18 A 258 GLN MET ARG ASP LEU ILE LEU THR GLU TYR GLY ARG LYS SEQRES 19 A 258 TYR ASN VAL ASN ILE SER ALA LEU THR GLN THR GLU ILE SEQRES 20 A 258 LYS ASP ILE ILE LEU GLY GLN ASN ILE LYS ALA SEQRES 1 B 308 GLY ALA MET ALA MET ASN THR VAL PRO PHE THR SER ALA SEQRES 2 B 308 PRO ILE GLU VAL THR ILE GLY ILE ASP GLN TYR SER PHE SEQRES 3 B 308 ASN VAL LYS GLU ASN GLN PRO PHE HIS GLY ILE LYS ASP SEQRES 4 B 308 ILE PRO ILE GLY HIS VAL HIS VAL ILE HIS PHE GLN HIS SEQRES 5 B 308 ALA ASP ASN SER SER MET ARG TYR GLY TYR TRP PHE ASP SEQRES 6 B 308 CYS ARG MET GLY ASN PHE TYR ILE GLN TYR ASP PRO LYS SEQRES 7 B 308 ASP GLY LEU TYR LYS MET MET GLU GLU ARG ASP GLY ALA SEQRES 8 B 308 LYS PHE GLU ASN ILE VAL HIS ASN PHE LYS GLU ARG GLN SEQRES 9 B 308 MET MET VAL SER TYR PRO LYS ILE ASP GLU ASP ASP THR SEQRES 10 B 308 TRP TYR ASN LEU THR GLU PHE VAL GLN MET ASP LYS ILE SEQRES 11 B 308 ARG LYS ILE VAL ARG LYS ASP GLU ASN GLN PHE SER TYR SEQRES 12 B 308 VAL ASP SER SER MET THR THR VAL GLN GLU ASN GLU LEU SEQRES 13 B 308 SER SER SER SER SER ASP PRO ALA HIS SER LEU ASN TYR SEQRES 14 B 308 THR VAL ILE ASN PHE LYS SER ARG GLU ALA ILE ARG PRO SEQRES 15 B 308 GLY HIS GLU MET GLU ASP PHE LEU ASP LYS SER TYR TYR SEQRES 16 B 308 LEU ASN THR VAL MET LEU GLN GLY ILE PHE LYS ASN SER SEQRES 17 B 308 SER ASN TYR PHE GLY GLU LEU GLN PHE ALA PHE LEU ASN SEQRES 18 B 308 ALA MET PHE PHE GLY ASN TYR GLY SER SER LEU GLN TRP SEQRES 19 B 308 HIS ALA MET ILE GLU LEU ILE CYS SER SER ALA THR VAL SEQRES 20 B 308 PRO LYS HIS MET LEU ASP LYS LEU ASP GLU ILE LEU TYR SEQRES 21 B 308 TYR GLN ILE LYS THR LEU PRO GLU GLN TYR SER ASP ILE SEQRES 22 B 308 LEU LEU ASN GLU ARG VAL TRP ASN ILE CYS LEU TYR SER SEQRES 23 B 308 SER PHE GLN LYS ASN SER LEU HIS ASN THR GLU LYS ILE SEQRES 24 B 308 MET GLU ASN LYS TYR PRO GLU LEU LEU FORMUL 3 HOH *97(H2 O) HELIX 1 AA1 TYR A 1840 ASN A 1845 5 6 HELIX 2 AA2 HIS A 1895 ALA A 1900 5 6 HELIX 3 AA3 ARG A 1904 LEU A 1924 1 21 HELIX 4 AA4 PRO A 1925 GLN A 1929 5 5 HELIX 5 AA5 ARG A 1937 ALA A 1939 5 3 HELIX 6 AA6 MET A 1940 MET A 1948 1 9 HELIX 7 AA7 PRO A 1964 SER A 1970 5 7 HELIX 8 AA8 ILE A 1971 ALA A 1981 1 11 HELIX 9 AA9 ASP A 1994 ARG A 1998 5 5 HELIX 10 AB1 SER A 2000 ASN A 2018 1 19 HELIX 11 AB2 ASN A 2018 SER A 2028 1 11 HELIX 12 AB3 THR A 2044 ASN A 2068 1 25 HELIX 13 AB4 ASP B 61 GLY B 65 5 5 HELIX 14 AB5 ASP B 85 ARG B 99 1 15 HELIX 15 AB6 ASP B 112 GLU B 119 1 8 HELIX 16 AB7 GLN B 122 VAL B 130 1 9 HELIX 17 AB8 ASP B 171 SER B 175 5 5 HELIX 18 AB9 HIS B 193 ASP B 200 1 8 HELIX 19 AC1 LYS B 201 THR B 207 1 7 HELIX 20 AC2 ASN B 216 GLY B 235 1 20 HELIX 21 AC3 ASN B 236 SER B 252 1 17 HELIX 22 AC4 PRO B 257 LEU B 275 1 19 HELIX 23 AC5 PRO B 276 GLN B 278 5 3 HELIX 24 AC6 TYR B 279 LEU B 284 1 6 HELIX 25 AC7 ASN B 285 SER B 295 1 11 HELIX 26 AC8 LEU B 302 TYR B 313 1 12 HELIX 27 AC9 PRO B 314 LEU B 317 5 4 SHEET 1 AA1 6 ALA A1955 ARG A1957 0 SHEET 2 AA1 6 GLN A1932 VAL A1935 1 N VAL A1935 O ARG A1957 SHEET 3 AA1 6 LYS A1849 ASP A1853 1 N VAL A1852 O ILE A1934 SHEET 4 AA1 6 GLY A1877 LEU A1882 -1 O LEU A1882 N PHE A1851 SHEET 5 AA1 6 HIS A1888 ILE A1894 -1 O PHE A1890 N THR A1881 SHEET 6 AA1 6 GLN A1985 ASN A1990 -1 O GLN A1985 N ILE A1893 SHEET 1 AA2 2 ARG A1859 LYS A1864 0 SHEET 2 AA2 2 VAL A1870 ILE A1875 -1 O ALA A1871 N HIS A1863 SHEET 1 AA3 3 ASN B 2 PRO B 5 0 SHEET 2 AA3 3 GLY B 32 ILE B 36 -1 O ILE B 33 N VAL B 4 SHEET 3 AA3 3 VAL B 103 SER B 104 1 O VAL B 103 N GLY B 32 SHEET 1 AA4 5 TYR B 20 VAL B 24 0 SHEET 2 AA4 5 VAL B 13 ILE B 17 -1 N VAL B 13 O VAL B 24 SHEET 3 AA4 5 HIS B 42 HIS B 48 -1 O HIS B 45 N GLY B 16 SHEET 4 AA4 5 ASN B 51 PHE B 60 -1 O PHE B 60 N HIS B 42 SHEET 5 AA4 5 SER B 138 ASP B 141 -1 O SER B 138 N TRP B 59 SHEET 1 AA5 2 ASN B 66 ASP B 72 0 SHEET 2 AA5 2 LEU B 77 GLU B 83 -1 O MET B 81 N TYR B 68 CRYST1 88.760 81.976 93.952 90.00 108.71 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011266 0.000000 0.003817 0.00000 SCALE2 0.000000 0.012199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011238 0.00000 TER 2003 VAL A2069 TER 4584 LEU B 317 HETATM 4585 O HOH A2101 66.485 27.473 21.288 1.00 52.60 O HETATM 4586 O HOH A2102 39.044 3.398 18.696 1.00 30.81 O HETATM 4587 O HOH A2103 44.246 33.159 40.542 1.00 37.90 O HETATM 4588 O HOH A2104 40.537 14.324 14.638 1.00 36.03 O HETATM 4589 O HOH A2105 20.006 4.955 29.677 1.00 30.85 O HETATM 4590 O HOH A2106 16.489 18.405 35.868 1.00 47.81 O HETATM 4591 O HOH A2107 41.678 26.418 44.662 1.00 33.99 O HETATM 4592 O HOH A2108 21.960 4.017 21.273 1.00 38.98 O HETATM 4593 O HOH A2109 38.553 8.384 26.980 1.00 26.48 O HETATM 4594 O HOH A2110 37.682 4.583 20.772 1.00 28.07 O HETATM 4595 O HOH A2111 41.544 20.609 47.220 1.00 28.71 O HETATM 4596 O HOH A2112 47.191 23.780 21.152 1.00 45.61 O HETATM 4597 O HOH A2113 66.662 28.214 22.585 1.00 44.10 O HETATM 4598 O HOH A2114 23.083 18.328 32.089 1.00 32.00 O HETATM 4599 O HOH A2115 25.992 20.038 34.764 1.00 35.56 O HETATM 4600 O HOH A2116 32.626 -1.075 31.366 1.00 28.24 O HETATM 4601 O HOH A2117 38.597 -9.064 31.782 1.00 35.72 O HETATM 4602 O HOH A2118 27.105 5.352 30.101 1.00 30.53 O HETATM 4603 O HOH A2119 27.644 25.757 27.750 1.00 30.17 O HETATM 4604 O HOH A2120 35.912 17.859 42.625 1.00 31.61 O HETATM 4605 O HOH A2121 42.523 13.818 48.888 1.00 31.79 O HETATM 4606 O HOH A2122 30.874 9.100 29.774 1.00 25.49 O HETATM 4607 O HOH A2123 40.261 -0.752 27.487 1.00 22.60 O HETATM 4608 O HOH A2124 41.247 22.679 43.645 1.00 28.12 O HETATM 4609 O HOH A2125 36.643 16.501 16.387 1.00 29.86 O HETATM 4610 O HOH A2126 21.720 13.531 17.204 1.00 32.46 O HETATM 4611 O HOH A2127 34.414 32.970 20.399 1.00 39.46 O HETATM 4612 O HOH A2128 55.385 21.496 24.863 1.00 37.12 O HETATM 4613 O HOH A2129 27.028 23.368 28.897 1.00 27.86 O HETATM 4614 O HOH A2130 40.088 4.167 22.670 1.00 29.03 O HETATM 4615 O HOH A2131 42.766 -3.218 33.977 1.00 30.04 O HETATM 4616 O HOH A2132 33.699 21.335 46.006 1.00 33.41 O HETATM 4617 O HOH A2133 39.677 -9.216 23.794 1.00 36.65 O HETATM 4618 O HOH A2134 33.273 2.693 12.529 1.00 38.51 O HETATM 4619 O HOH A2135 33.461 24.713 40.689 1.00 28.26 O HETATM 4620 O HOH A2136 32.989 9.474 11.702 1.00 29.36 O HETATM 4621 O HOH A2137 40.489 18.035 17.063 1.00 48.71 O HETATM 4622 O HOH A2138 40.109 10.502 28.404 1.00 39.08 O HETATM 4623 O HOH A2139 40.063 -5.212 37.315 1.00 39.35 O HETATM 4624 O HOH A2140 26.949 -0.213 19.111 1.00 32.23 O HETATM 4625 O HOH A2141 12.489 14.194 31.678 1.00 40.99 O HETATM 4626 O HOH A2142 25.970 18.181 32.258 1.00 26.97 O HETATM 4627 O HOH A2143 46.710 1.819 24.686 1.00 37.50 O HETATM 4628 O HOH A2144 54.251 12.970 30.116 1.00 46.60 O HETATM 4629 O HOH A2145 56.713 11.974 33.075 1.00 41.89 O HETATM 4630 O HOH A2146 16.068 15.440 19.559 1.00 41.56 O HETATM 4631 O HOH A2147 43.854 13.496 42.042 1.00 28.63 O HETATM 4632 O HOH A2148 64.898 28.719 23.958 1.00 39.67 O HETATM 4633 O HOH A2149 39.498 10.712 14.368 1.00 30.47 O HETATM 4634 O HOH A2150 36.011 11.771 20.428 1.00 28.21 O HETATM 4635 O HOH A2151 43.504 -8.750 26.876 1.00 38.04 O HETATM 4636 O HOH A2152 32.476 32.157 31.369 1.00 29.79 O HETATM 4637 O HOH A2153 40.298 8.761 16.165 1.00 36.98 O HETATM 4638 O HOH A2154 54.137 20.514 20.252 1.00 43.91 O HETATM 4639 O HOH A2155 44.967 12.600 44.401 1.00 31.42 O HETATM 4640 O HOH A2156 63.766 30.960 25.259 1.00 42.07 O HETATM 4641 O HOH B 401 15.150 23.718 -23.821 1.00 38.20 O HETATM 4642 O HOH B 402 4.550 -1.994 -17.592 1.00 38.43 O HETATM 4643 O HOH B 403 24.920 -10.261 6.839 1.00 33.51 O HETATM 4644 O HOH B 404 -3.673 5.485 -28.575 1.00 35.25 O HETATM 4645 O HOH B 405 19.388 18.050 -12.096 1.00 35.07 O HETATM 4646 O HOH B 406 7.294 -6.110 -35.972 1.00 40.10 O HETATM 4647 O HOH B 407 -2.420 11.509 -22.795 1.00 35.28 O HETATM 4648 O HOH B 408 3.311 15.854 -23.219 1.00 32.64 O HETATM 4649 O HOH B 409 23.147 2.404 6.800 1.00 31.11 O HETATM 4650 O HOH B 410 27.255 4.179 5.113 1.00 30.76 O HETATM 4651 O HOH B 411 14.360 26.754 -27.033 1.00 40.03 O HETATM 4652 O HOH B 412 25.392 6.330 -2.333 1.00 42.23 O HETATM 4653 O HOH B 413 21.767 -0.136 7.115 1.00 27.89 O HETATM 4654 O HOH B 414 9.002 28.844 -30.667 1.00 35.14 O HETATM 4655 O HOH B 415 16.419 25.817 -31.090 1.00 32.18 O HETATM 4656 O HOH B 416 3.265 12.647 -19.035 1.00 34.60 O HETATM 4657 O HOH B 417 1.789 8.622 -13.444 1.00 40.69 O HETATM 4658 O HOH B 418 22.052 -2.153 -17.495 1.00 26.52 O HETATM 4659 O HOH B 419 12.739 -10.496 -9.133 1.00 41.02 O HETATM 4660 O HOH B 420 20.244 1.300 -17.164 1.00 30.31 O HETATM 4661 O HOH B 421 13.863 -4.244 -22.159 1.00 33.27 O HETATM 4662 O HOH B 422 19.952 -2.525 -28.698 1.00 32.50 O HETATM 4663 O HOH B 423 6.952 30.428 -30.032 1.00 28.92 O HETATM 4664 O HOH B 424 15.308 26.849 -34.680 1.00 38.63 O HETATM 4665 O HOH B 425 -2.175 13.055 -24.932 1.00 40.80 O HETATM 4666 O HOH B 426 6.355 14.608 -15.376 1.00 35.18 O HETATM 4667 O HOH B 427 17.677 16.424 -9.674 1.00 34.54 O HETATM 4668 O HOH B 428 22.485 26.796 -25.988 1.00 36.34 O HETATM 4669 O HOH B 429 22.689 7.862 2.634 1.00 36.99 O HETATM 4670 O HOH B 430 10.575 6.684 -0.449 1.00 36.62 O HETATM 4671 O HOH B 431 26.399 11.600 -8.594 1.00 47.11 O HETATM 4672 O HOH B 432 11.801 -2.469 -21.209 1.00 34.93 O HETATM 4673 O HOH B 433 25.648 -3.946 16.544 1.00 35.45 O HETATM 4674 O HOH B 434 4.621 12.712 -16.766 1.00 33.03 O HETATM 4675 O HOH B 435 13.505 10.511 -3.978 1.00 31.84 O HETATM 4676 O HOH B 436 18.373 -4.496 -27.564 1.00 31.98 O HETATM 4677 O HOH B 437 14.000 -11.461 -5.988 1.00 47.47 O HETATM 4678 O HOH B 438 31.022 -2.709 2.599 1.00 39.41 O HETATM 4679 O HOH B 439 43.852 1.724 -20.039 1.00 53.62 O HETATM 4680 O HOH B 440 3.648 15.125 -20.667 1.00 38.60 O HETATM 4681 O HOH B 441 23.377 33.007 -25.106 1.00 44.05 O MASTER 374 0 0 27 18 0 0 6 4499 2 0 44 END