HEADER SPLICING 30-MAR-20 5R11 TITLE PANDDA ANALYSIS GROUP DEPOSITION -- AUTO-REFINED DATA OF AAR2/RNASEH TITLE 2 FOR GROUND STATE MODEL 15, DMSO-FREE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: YPRP8 RNASEH (UNP RESIDUES 1836-2096); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: A1 CISTRON-SPLICING FACTOR AAR2; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: GAMA - AAR2(1-152) - SSSSS - AAR2(171-317); COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: PRP8, DBF3, DNA39, RNA8, SLT21, USA2, YHR165C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 12 S288C); SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: AAR2, YBL074C, YBL06.06, YBL0611; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FRAGMAX, FRAGMAXAPP, FRAGMENT SCREENING, RNASEH LIKE DOMAIN, VHS LIKE KEYWDS 2 DOMAIN, U5 SNRNP ASSEMBLY, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR J.WOLLENHAUPT,A.METZ,T.BARTHEL,G.M.A.LIMA,A.HEINE,U.MUELLER,G.KLEBE, AUTHOR 2 M.S.WEISS REVDAT 4 06-MAR-24 5R11 1 REMARK REVDAT 3 10-MAR-21 5R11 1 REMARK REVDAT 2 17-JUN-20 5R11 1 JRNL REVDAT 1 03-JUN-20 5R11 0 JRNL AUTH J.WOLLENHAUPT,A.METZ,T.BARTHEL,G.M.A.LIMA,A.HEINE,U.MUELLER, JRNL AUTH 2 G.KLEBE,M.S.WEISS JRNL TITL F2X-UNIVERSAL AND F2X-ENTRY: STRUCTURALLY DIVERSE COMPOUND JRNL TITL 2 LIBRARIES FOR CRYSTALLOGRAPHIC FRAGMENT SCREENING. JRNL REF STRUCTURE V. 28 694 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 32413289 JRNL DOI 10.1016/J.STR.2020.04.019 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.690 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3519 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.5196 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.5575 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4402 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.400 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1833 A 1904 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0442 8.0033 25.7480 REMARK 3 T TENSOR REMARK 3 T11: 0.4776 T22: 0.3758 REMARK 3 T33: 0.4095 T12: 0.0024 REMARK 3 T13: 0.0384 T23: 0.1030 REMARK 3 L TENSOR REMARK 3 L11: 2.2626 L22: 0.3597 REMARK 3 L33: 0.8896 L12: -0.5171 REMARK 3 L13: 0.1530 L23: 0.1808 REMARK 3 S TENSOR REMARK 3 S11: 0.1432 S12: 0.0839 S13: -0.1043 REMARK 3 S21: -0.2949 S22: -0.1614 S23: 0.0349 REMARK 3 S31: -0.0882 S32: -0.0856 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1905 A 1964 REMARK 3 ORIGIN FOR THE GROUP (A): 28.1185 11.9681 20.8620 REMARK 3 T TENSOR REMARK 3 T11: 0.4297 T22: 0.4067 REMARK 3 T33: 0.2792 T12: 0.0097 REMARK 3 T13: 0.0085 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 1.9412 L22: 1.6212 REMARK 3 L33: 0.9580 L12: 0.0087 REMARK 3 L13: 0.9163 L23: -0.1767 REMARK 3 S TENSOR REMARK 3 S11: -0.0741 S12: 0.3267 S13: -0.1323 REMARK 3 S21: -0.2602 S22: -0.0433 S23: 0.0132 REMARK 3 S31: 0.1376 S32: -0.1521 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1965 A 2027 REMARK 3 ORIGIN FOR THE GROUP (A): 42.9611 16.6942 35.4108 REMARK 3 T TENSOR REMARK 3 T11: 0.2893 T22: 0.3737 REMARK 3 T33: 0.4250 T12: -0.0134 REMARK 3 T13: 0.0057 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 1.4438 L22: 1.1711 REMARK 3 L33: 2.0378 L12: -0.5765 REMARK 3 L13: 0.1295 L23: 0.4629 REMARK 3 S TENSOR REMARK 3 S11: -0.0511 S12: -0.1622 S13: 0.2505 REMARK 3 S21: -0.0038 S22: 0.1000 S23: -0.2433 REMARK 3 S31: -0.0659 S32: 0.1440 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2028 A 2069 REMARK 3 ORIGIN FOR THE GROUP (A): 51.4557 24.7311 36.4879 REMARK 3 T TENSOR REMARK 3 T11: 0.3692 T22: 0.4524 REMARK 3 T33: 0.6449 T12: -0.0583 REMARK 3 T13: 0.0464 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.3092 L22: 0.2570 REMARK 3 L33: 1.1596 L12: 0.2191 REMARK 3 L13: 0.5608 L23: 0.0189 REMARK 3 S TENSOR REMARK 3 S11: 0.1285 S12: -0.1797 S13: 0.3555 REMARK 3 S21: -0.0234 S22: 0.0113 S23: -0.4001 REMARK 3 S31: -0.0948 S32: 0.3904 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9212 11.6564 -29.6140 REMARK 3 T TENSOR REMARK 3 T11: 0.5736 T22: 0.4250 REMARK 3 T33: 0.4814 T12: -0.0053 REMARK 3 T13: -0.0793 T23: -0.1265 REMARK 3 L TENSOR REMARK 3 L11: 0.2637 L22: 0.3229 REMARK 3 L33: 0.7572 L12: -0.3498 REMARK 3 L13: 0.4131 L23: -0.2252 REMARK 3 S TENSOR REMARK 3 S11: -0.1120 S12: 0.0838 S13: 0.1134 REMARK 3 S21: -0.1140 S22: -0.0643 S23: 0.1856 REMARK 3 S31: -0.0282 S32: -0.1919 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 67 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4653 7.3327 -27.6863 REMARK 3 T TENSOR REMARK 3 T11: 0.4092 T22: 0.5058 REMARK 3 T33: 0.5260 T12: -0.0436 REMARK 3 T13: -0.0787 T23: -0.1642 REMARK 3 L TENSOR REMARK 3 L11: 0.9906 L22: 1.1123 REMARK 3 L33: 2.1726 L12: 0.4644 REMARK 3 L13: 0.0757 L23: -0.4056 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: 0.0094 S13: -0.0310 REMARK 3 S21: -0.3373 S22: -0.0834 S23: 0.2828 REMARK 3 S31: 0.1686 S32: -0.3842 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 138 B 251 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0592 4.5302 -2.6215 REMARK 3 T TENSOR REMARK 3 T11: 0.4489 T22: 0.5131 REMARK 3 T33: 0.4095 T12: -0.0420 REMARK 3 T13: 0.0078 T23: -0.1195 REMARK 3 L TENSOR REMARK 3 L11: 0.2470 L22: 0.8170 REMARK 3 L33: 2.0762 L12: -0.1236 REMARK 3 L13: 0.3392 L23: 0.5420 REMARK 3 S TENSOR REMARK 3 S11: -0.0840 S12: -0.1554 S13: 0.1290 REMARK 3 S21: 0.0718 S22: -0.1420 S23: 0.0683 REMARK 3 S31: -0.0123 S32: -0.4312 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 252 B 317 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0223 -0.8508 -10.8683 REMARK 3 T TENSOR REMARK 3 T11: 0.4857 T22: 0.4428 REMARK 3 T33: 0.4467 T12: -0.0118 REMARK 3 T13: 0.0188 T23: -0.0780 REMARK 3 L TENSOR REMARK 3 L11: 1.1726 L22: 0.7379 REMARK 3 L33: 1.6943 L12: -0.2221 REMARK 3 L13: 0.5223 L23: 0.9754 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: -0.0241 S13: 0.0628 REMARK 3 S21: -0.1920 S22: -0.0059 S23: -0.0385 REMARK 3 S31: 0.3567 S32: 0.1915 S33: -0.0001 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5R11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1001402635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.827 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56890 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 22.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.821 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.83 REMARK 200 R MERGE FOR SHELL (I) : 2.20700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0238 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE, 24-30% PEG 4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.33650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.21900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.33650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.21900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 2070 REMARK 465 ILE A 2071 REMARK 465 SER A 2072 REMARK 465 ALA A 2073 REMARK 465 LEU A 2074 REMARK 465 THR A 2075 REMARK 465 GLN A 2076 REMARK 465 THR A 2077 REMARK 465 GLU A 2078 REMARK 465 ILE A 2079 REMARK 465 LYS A 2080 REMARK 465 ASP A 2081 REMARK 465 ILE A 2082 REMARK 465 ILE A 2083 REMARK 465 LEU A 2084 REMARK 465 GLY A 2085 REMARK 465 GLN A 2086 REMARK 465 ASN A 2087 REMARK 465 ILE A 2088 REMARK 465 LYS A 2089 REMARK 465 ALA A 2090 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 SER B 166 REMARK 465 SER B 167 REMARK 465 SER B 168 REMARK 465 SER B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A2068 CB CG OD1 ND2 REMARK 470 VAL A2069 CG1 CG2 REMARK 470 LEU B 152 CG CD1 CD2 REMARK 470 SER B 170 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2167 O HOH A 2168 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1839 36.51 -97.98 REMARK 500 ARG A1962 73.56 -101.16 REMARK 500 PRO A1964 31.98 -91.01 REMARK 500 ASP A1993 -124.84 47.28 REMARK 500 ASN A2018 86.81 -159.49 REMARK 500 ASN A2018 86.81 -159.74 REMARK 500 ASP B 18 -133.62 48.51 REMARK 500 SER B 52 10.14 -68.72 REMARK 500 MET B 54 75.90 58.49 REMARK 500 MET B 54 77.93 52.96 REMARK 500 LYS B 132 80.94 -155.17 REMARK 500 LYS B 184 58.14 -115.47 REMARK 500 LYS B 215 -40.52 74.68 REMARK 500 LYS B 312 -35.34 -133.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 5R11 A 1836 2090 UNP P33334 PRP8_YEAST 1836 2090 DBREF 5R11 B 1 317 UNP P32357 AAR2_YEAST 1 317 SEQADV 5R11 GLY A 1833 UNP P33334 EXPRESSION TAG SEQADV 5R11 ALA A 1834 UNP P33334 EXPRESSION TAG SEQADV 5R11 MET A 1835 UNP P33334 EXPRESSION TAG SEQADV 5R11 GLY B -3 UNP P32357 EXPRESSION TAG SEQADV 5R11 ALA B -2 UNP P32357 EXPRESSION TAG SEQADV 5R11 MET B -1 UNP P32357 EXPRESSION TAG SEQADV 5R11 ALA B 0 UNP P32357 EXPRESSION TAG SEQADV 5R11 SER B 166 UNP P32357 LEU 153 CONFLICT SEQADV 5R11 SER B 167 UNP P32357 LYS 154 CONFLICT SEQADV 5R11 SER B 170 UNP P32357 LEU 157 CONFLICT SEQADV 5R11 B UNP P32357 GLN 158 DELETION SEQADV 5R11 B UNP P32357 LYS 159 DELETION SEQADV 5R11 B UNP P32357 ALA 160 DELETION SEQADV 5R11 B UNP P32357 GLY 161 DELETION SEQADV 5R11 B UNP P32357 SER 162 DELETION SEQADV 5R11 B UNP P32357 LYS 163 DELETION SEQADV 5R11 B UNP P32357 MET 164 DELETION SEQADV 5R11 B UNP P32357 GLU 165 DELETION SEQADV 5R11 B UNP P32357 ALA 166 DELETION SEQADV 5R11 B UNP P32357 LYS 167 DELETION SEQADV 5R11 B UNP P32357 ASN 168 DELETION SEQADV 5R11 B UNP P32357 GLU 169 DELETION SEQADV 5R11 B UNP P32357 ASP 170 DELETION SEQRES 1 A 258 GLY ALA MET ASN SER SER ASN TYR ALA GLU LEU PHE ASN SEQRES 2 A 258 ASN ASP ILE LYS LEU PHE VAL ASP ASP THR ASN VAL TYR SEQRES 3 A 258 ARG VAL THR VAL HIS LYS THR PHE GLU GLY ASN VAL ALA SEQRES 4 A 258 THR LYS ALA ILE ASN GLY CYS ILE PHE THR LEU ASN PRO SEQRES 5 A 258 LYS THR GLY HIS LEU PHE LEU LYS ILE ILE HIS THR SER SEQRES 6 A 258 VAL TRP ALA GLY GLN LYS ARG LEU SER GLN LEU ALA LYS SEQRES 7 A 258 TRP LYS THR ALA GLU GLU VAL SER ALA LEU VAL ARG SER SEQRES 8 A 258 LEU PRO LYS GLU GLU GLN PRO LYS GLN ILE ILE VAL THR SEQRES 9 A 258 ARG LYS ALA MET LEU ASP PRO LEU GLU VAL HIS MET LEU SEQRES 10 A 258 ASP PHE PRO ASN ILE ALA ILE ARG PRO THR GLU LEU ARG SEQRES 11 A 258 LEU PRO PHE SER ALA ALA MET SER ILE ASP LYS LEU SER SEQRES 12 A 258 ASP VAL VAL MET LYS ALA THR GLU PRO GLN MET VAL LEU SEQRES 13 A 258 PHE ASN ILE TYR ASP ASP TRP LEU ASP ARG ILE SER SER SEQRES 14 A 258 TYR THR ALA PHE SER ARG LEU THR LEU LEU LEU ARG ALA SEQRES 15 A 258 LEU LYS THR ASN GLU GLU SER ALA LYS MET ILE LEU LEU SEQRES 16 A 258 SER ASP PRO THR ILE THR ILE LYS SER TYR HIS LEU TRP SEQRES 17 A 258 PRO SER PHE THR ASP GLU GLN TRP ILE THR ILE GLU SER SEQRES 18 A 258 GLN MET ARG ASP LEU ILE LEU THR GLU TYR GLY ARG LYS SEQRES 19 A 258 TYR ASN VAL ASN ILE SER ALA LEU THR GLN THR GLU ILE SEQRES 20 A 258 LYS ASP ILE ILE LEU GLY GLN ASN ILE LYS ALA SEQRES 1 B 308 GLY ALA MET ALA MET ASN THR VAL PRO PHE THR SER ALA SEQRES 2 B 308 PRO ILE GLU VAL THR ILE GLY ILE ASP GLN TYR SER PHE SEQRES 3 B 308 ASN VAL LYS GLU ASN GLN PRO PHE HIS GLY ILE LYS ASP SEQRES 4 B 308 ILE PRO ILE GLY HIS VAL HIS VAL ILE HIS PHE GLN HIS SEQRES 5 B 308 ALA ASP ASN SER SER MET ARG TYR GLY TYR TRP PHE ASP SEQRES 6 B 308 CYS ARG MET GLY ASN PHE TYR ILE GLN TYR ASP PRO LYS SEQRES 7 B 308 ASP GLY LEU TYR LYS MET MET GLU GLU ARG ASP GLY ALA SEQRES 8 B 308 LYS PHE GLU ASN ILE VAL HIS ASN PHE LYS GLU ARG GLN SEQRES 9 B 308 MET MET VAL SER TYR PRO LYS ILE ASP GLU ASP ASP THR SEQRES 10 B 308 TRP TYR ASN LEU THR GLU PHE VAL GLN MET ASP LYS ILE SEQRES 11 B 308 ARG LYS ILE VAL ARG LYS ASP GLU ASN GLN PHE SER TYR SEQRES 12 B 308 VAL ASP SER SER MET THR THR VAL GLN GLU ASN GLU LEU SEQRES 13 B 308 SER SER SER SER SER ASP PRO ALA HIS SER LEU ASN TYR SEQRES 14 B 308 THR VAL ILE ASN PHE LYS SER ARG GLU ALA ILE ARG PRO SEQRES 15 B 308 GLY HIS GLU MET GLU ASP PHE LEU ASP LYS SER TYR TYR SEQRES 16 B 308 LEU ASN THR VAL MET LEU GLN GLY ILE PHE LYS ASN SER SEQRES 17 B 308 SER ASN TYR PHE GLY GLU LEU GLN PHE ALA PHE LEU ASN SEQRES 18 B 308 ALA MET PHE PHE GLY ASN TYR GLY SER SER LEU GLN TRP SEQRES 19 B 308 HIS ALA MET ILE GLU LEU ILE CYS SER SER ALA THR VAL SEQRES 20 B 308 PRO LYS HIS MET LEU ASP LYS LEU ASP GLU ILE LEU TYR SEQRES 21 B 308 TYR GLN ILE LYS THR LEU PRO GLU GLN TYR SER ASP ILE SEQRES 22 B 308 LEU LEU ASN GLU ARG VAL TRP ASN ILE CYS LEU TYR SER SEQRES 23 B 308 SER PHE GLN LYS ASN SER LEU HIS ASN THR GLU LYS ILE SEQRES 24 B 308 MET GLU ASN LYS TYR PRO GLU LEU LEU FORMUL 3 HOH *106(H2 O) HELIX 1 AA1 ASN A 1839 ASN A 1845 5 7 HELIX 2 AA2 HIS A 1895 ALA A 1900 5 6 HELIX 3 AA3 ARG A 1904 LEU A 1924 1 21 HELIX 4 AA4 PRO A 1925 GLN A 1929 5 5 HELIX 5 AA5 ARG A 1937 ALA A 1939 5 3 HELIX 6 AA6 MET A 1940 MET A 1948 1 9 HELIX 7 AA7 PRO A 1964 SER A 1970 5 7 HELIX 8 AA8 ILE A 1971 ALA A 1981 1 11 HELIX 9 AA9 ASP A 1994 ARG A 1998 5 5 HELIX 10 AB1 SER A 2000 ASN A 2018 1 19 HELIX 11 AB2 ASN A 2018 SER A 2028 1 11 HELIX 12 AB3 THR A 2044 ASN A 2068 1 25 HELIX 13 AB4 ASP B 61 GLY B 65 5 5 HELIX 14 AB5 ASP B 85 GLN B 100 1 16 HELIX 15 AB6 ASP B 112 GLU B 119 1 8 HELIX 16 AB7 GLN B 122 VAL B 130 1 9 HELIX 17 AB8 THR B 146 LEU B 152 1 7 HELIX 18 AB9 ASP B 171 SER B 175 5 5 HELIX 19 AC1 HIS B 193 ASP B 200 1 8 HELIX 20 AC2 LYS B 201 THR B 207 1 7 HELIX 21 AC3 ASN B 216 GLY B 235 1 20 HELIX 22 AC4 ASN B 236 SER B 252 1 17 HELIX 23 AC5 PRO B 257 LEU B 275 1 19 HELIX 24 AC6 PRO B 276 GLN B 278 5 3 HELIX 25 AC7 TYR B 279 LEU B 284 1 6 HELIX 26 AC8 ASN B 285 SER B 295 1 11 HELIX 27 AC9 LEU B 302 TYR B 313 1 12 SHEET 1 AA1 6 ALA A1955 ARG A1957 0 SHEET 2 AA1 6 GLN A1932 VAL A1935 1 N ILE A1933 O ALA A1955 SHEET 3 AA1 6 LYS A1849 ASP A1853 1 N LEU A1850 O ILE A1934 SHEET 4 AA1 6 GLY A1877 LEU A1882 -1 O LEU A1882 N PHE A1851 SHEET 5 AA1 6 HIS A1888 ILE A1894 -1 O ILE A1894 N GLY A1877 SHEET 6 AA1 6 GLN A1985 ASN A1990 -1 O PHE A1989 N LEU A1889 SHEET 1 AA2 2 ARG A1859 LYS A1864 0 SHEET 2 AA2 2 VAL A1870 ILE A1875 -1 O ILE A1875 N ARG A1859 SHEET 1 AA3 3 ASN B 2 PRO B 5 0 SHEET 2 AA3 3 GLY B 32 ILE B 36 -1 O ILE B 33 N VAL B 4 SHEET 3 AA3 3 VAL B 103 SER B 104 1 O VAL B 103 N LYS B 34 SHEET 1 AA4 5 TYR B 20 VAL B 24 0 SHEET 2 AA4 5 VAL B 13 ILE B 17 -1 N ILE B 15 O PHE B 22 SHEET 3 AA4 5 HIS B 42 HIS B 48 -1 O HIS B 45 N GLY B 16 SHEET 4 AA4 5 TYR B 56 PHE B 60 -1 O TYR B 56 N PHE B 46 SHEET 5 AA4 5 SER B 138 ASP B 141 -1 O SER B 138 N TRP B 59 SHEET 1 AA5 2 ASN B 66 ASP B 72 0 SHEET 2 AA5 2 LEU B 77 GLU B 83 -1 O MET B 81 N TYR B 68 CRYST1 88.673 82.438 92.747 90.00 107.96 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011277 0.000000 0.003656 0.00000 SCALE2 0.000000 0.012130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011334 0.00000