HEADER SPLICING 30-MAR-20 5R1C TITLE PANDDA ANALYSIS GROUP DEPOSITION -- AUTO-REFINED DATA OF AAR2/RNASEH TITLE 2 FOR GROUND STATE MODEL 27, DMSO-FREE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: YPRP8 RNASEH (UNP RESIDUES 1836-2096); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: A1 CISTRON-SPLICING FACTOR AAR2; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: GAMA - AAR2(1-152) - SSSSS - AAR2(171-317); COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: PRP8, DBF3, DNA39, RNA8, SLT21, USA2, YHR165C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 12 S288C); SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: AAR2, YBL074C, YBL06.06, YBL0611; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FRAGMAX, FRAGMAXAPP, FRAGMENT SCREENING, RNASEH LIKE DOMAIN, VHS LIKE KEYWDS 2 DOMAIN, U5 SNRNP ASSEMBLY, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR J.WOLLENHAUPT,A.METZ,T.BARTHEL,G.M.A.LIMA,A.HEINE,U.MUELLER,G.KLEBE, AUTHOR 2 M.S.WEISS REVDAT 4 06-MAR-24 5R1C 1 REMARK REVDAT 3 10-MAR-21 5R1C 1 REMARK REVDAT 2 17-JUN-20 5R1C 1 JRNL REVDAT 1 03-JUN-20 5R1C 0 JRNL AUTH J.WOLLENHAUPT,A.METZ,T.BARTHEL,G.M.A.LIMA,A.HEINE,U.MUELLER, JRNL AUTH 2 G.KLEBE,M.S.WEISS JRNL TITL F2X-UNIVERSAL AND F2X-ENTRY: STRUCTURALLY DIVERSE COMPOUND JRNL TITL 2 LIBRARIES FOR CRYSTALLOGRAPHIC FRAGMENT SCREENING. JRNL REF STRUCTURE V. 28 694 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 32413289 JRNL DOI 10.1016/J.STR.2020.04.019 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.210 REMARK 3 FREE R VALUE TEST SET COUNT : 2096 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3026 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.4200 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.4559 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4402 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.360 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1833 A 1904 REMARK 3 ORIGIN FOR THE GROUP (A): 38.3728 8.0125 25.7770 REMARK 3 T TENSOR REMARK 3 T11: 0.3963 T22: 0.3230 REMARK 3 T33: 0.3644 T12: 0.0074 REMARK 3 T13: 0.0345 T23: 0.1152 REMARK 3 L TENSOR REMARK 3 L11: 2.1221 L22: 0.5146 REMARK 3 L33: 1.6405 L12: -0.3491 REMARK 3 L13: -0.4099 L23: 0.6043 REMARK 3 S TENSOR REMARK 3 S11: 0.0919 S12: -0.0411 S13: -0.0304 REMARK 3 S21: -0.2394 S22: -0.1130 S23: -0.0373 REMARK 3 S31: -0.0993 S32: -0.0382 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1905 A 1964 REMARK 3 ORIGIN FOR THE GROUP (A): 28.4552 11.9706 20.8546 REMARK 3 T TENSOR REMARK 3 T11: 0.4400 T22: 0.4051 REMARK 3 T33: 0.2591 T12: -0.0240 REMARK 3 T13: 0.0003 T23: 0.0515 REMARK 3 L TENSOR REMARK 3 L11: 1.7144 L22: 2.0308 REMARK 3 L33: 1.3155 L12: -0.5912 REMARK 3 L13: 1.0172 L23: -0.5297 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: 0.3939 S13: -0.1785 REMARK 3 S21: -0.4153 S22: -0.1019 S23: -0.0539 REMARK 3 S31: 0.1087 S32: -0.1692 S33: -0.0011 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1965 A 2027 REMARK 3 ORIGIN FOR THE GROUP (A): 43.2597 16.7231 35.4595 REMARK 3 T TENSOR REMARK 3 T11: 0.3066 T22: 0.3871 REMARK 3 T33: 0.4336 T12: -0.0067 REMARK 3 T13: 0.0264 T23: 0.0564 REMARK 3 L TENSOR REMARK 3 L11: 2.3116 L22: 0.7190 REMARK 3 L33: 1.9412 L12: -0.3219 REMARK 3 L13: 0.4368 L23: 0.2154 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: -0.2356 S13: 0.3051 REMARK 3 S21: 0.0744 S22: 0.0635 S23: -0.3610 REMARK 3 S31: 0.0836 S32: 0.2176 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2028 A 2069 REMARK 3 ORIGIN FOR THE GROUP (A): 51.7995 24.7312 36.5762 REMARK 3 T TENSOR REMARK 3 T11: 0.4130 T22: 0.4841 REMARK 3 T33: 0.6812 T12: -0.0852 REMARK 3 T13: 0.0639 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.6453 L22: 0.1059 REMARK 3 L33: 0.7262 L12: -0.2340 REMARK 3 L13: -0.2075 L23: -0.1269 REMARK 3 S TENSOR REMARK 3 S11: 0.2551 S12: -0.3731 S13: 0.5275 REMARK 3 S21: -0.0413 S22: -0.0029 S23: -0.3604 REMARK 3 S31: -0.4558 S32: 0.4846 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0394 11.6260 -29.6116 REMARK 3 T TENSOR REMARK 3 T11: 0.5936 T22: 0.5184 REMARK 3 T33: 0.5915 T12: -0.0295 REMARK 3 T13: -0.0908 T23: -0.1118 REMARK 3 L TENSOR REMARK 3 L11: 0.3497 L22: 0.7293 REMARK 3 L33: 1.4188 L12: -0.6815 REMARK 3 L13: 0.2280 L23: 0.0536 REMARK 3 S TENSOR REMARK 3 S11: -0.1673 S12: -0.0421 S13: 0.0569 REMARK 3 S21: -0.3670 S22: -0.2064 S23: 0.1385 REMARK 3 S31: -0.0832 S32: -0.1394 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 67 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6079 7.2789 -27.6644 REMARK 3 T TENSOR REMARK 3 T11: 0.3668 T22: 0.5074 REMARK 3 T33: 0.5074 T12: -0.0396 REMARK 3 T13: -0.0694 T23: -0.1590 REMARK 3 L TENSOR REMARK 3 L11: 1.0003 L22: 1.2843 REMARK 3 L33: 2.3506 L12: 0.1230 REMARK 3 L13: -0.1399 L23: -0.0932 REMARK 3 S TENSOR REMARK 3 S11: -0.0771 S12: -0.0437 S13: 0.0468 REMARK 3 S21: -0.3977 S22: -0.1531 S23: 0.3079 REMARK 3 S31: 0.1125 S32: -0.5097 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 138 B 251 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3338 4.4990 -2.6365 REMARK 3 T TENSOR REMARK 3 T11: 0.4515 T22: 0.5648 REMARK 3 T33: 0.4061 T12: -0.0444 REMARK 3 T13: 0.0285 T23: -0.1490 REMARK 3 L TENSOR REMARK 3 L11: 0.5101 L22: 1.1826 REMARK 3 L33: 2.2243 L12: -0.0141 REMARK 3 L13: 0.7853 L23: 0.6569 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: -0.2894 S13: 0.0970 REMARK 3 S21: 0.1418 S22: -0.1577 S23: 0.1536 REMARK 3 S31: 0.0088 S32: -0.6924 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 252 B 317 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3115 -0.8588 -10.9310 REMARK 3 T TENSOR REMARK 3 T11: 0.5232 T22: 0.5063 REMARK 3 T33: 0.4614 T12: -0.0221 REMARK 3 T13: 0.0061 T23: -0.0664 REMARK 3 L TENSOR REMARK 3 L11: 0.8635 L22: 0.8867 REMARK 3 L33: 1.6176 L12: 0.3576 REMARK 3 L13: 0.2991 L23: 1.2477 REMARK 3 S TENSOR REMARK 3 S11: -0.1480 S12: 0.0841 S13: -0.0155 REMARK 3 S21: -0.1775 S22: 0.1109 S23: -0.1232 REMARK 3 S31: 0.2238 S32: 0.3791 S33: -0.0001 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5R1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1001402646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.827 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49791 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 23.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.785 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.57 REMARK 200 R MERGE FOR SHELL (I) : 2.00600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0238 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE, 24-30% PEG 4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.71600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.28100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.71600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.28100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 2070 REMARK 465 ILE A 2071 REMARK 465 SER A 2072 REMARK 465 ALA A 2073 REMARK 465 LEU A 2074 REMARK 465 THR A 2075 REMARK 465 GLN A 2076 REMARK 465 THR A 2077 REMARK 465 GLU A 2078 REMARK 465 ILE A 2079 REMARK 465 LYS A 2080 REMARK 465 ASP A 2081 REMARK 465 ILE A 2082 REMARK 465 ILE A 2083 REMARK 465 LEU A 2084 REMARK 465 GLY A 2085 REMARK 465 GLN A 2086 REMARK 465 ASN A 2087 REMARK 465 ILE A 2088 REMARK 465 LYS A 2089 REMARK 465 ALA A 2090 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 SER B 166 REMARK 465 SER B 167 REMARK 465 SER B 168 REMARK 465 SER B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A2068 CB CG OD1 ND2 REMARK 470 VAL A2069 CG1 CG2 REMARK 470 LEU B 152 CG CD1 CD2 REMARK 470 SER B 170 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2158 O HOH A 2162 1.75 REMARK 500 N MET B 1 O HOH B 401 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 121 CB VAL B 121 CG2 -0.136 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A1905 CB - CG - CD1 ANGL. DEV. = 10.8 DEGREES REMARK 500 LEU A1908 CB - CG - CD1 ANGL. DEV. = -14.0 DEGREES REMARK 500 ASP A1942 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 18 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1845 -166.57 -74.17 REMARK 500 ARG A1962 67.77 -106.46 REMARK 500 PRO A1964 36.79 -95.30 REMARK 500 ASP A1993 -124.35 49.36 REMARK 500 ASN A2068 47.99 71.16 REMARK 500 ASP B 18 -139.79 53.01 REMARK 500 PRO B 29 77.70 -67.12 REMARK 500 SER B 52 6.07 -69.79 REMARK 500 MET B 54 80.19 58.05 REMARK 500 MET B 54 82.83 52.32 REMARK 500 LYS B 132 77.20 -158.05 REMARK 500 LYS B 184 59.46 -118.48 REMARK 500 LYS B 215 -44.03 80.62 REMARK 500 REMARK 500 REMARK: NULL DBREF 5R1C A 1836 2090 UNP P33334 PRP8_YEAST 1836 2090 DBREF 5R1C B 1 317 UNP P32357 AAR2_YEAST 1 317 SEQADV 5R1C GLY A 1833 UNP P33334 EXPRESSION TAG SEQADV 5R1C ALA A 1834 UNP P33334 EXPRESSION TAG SEQADV 5R1C MET A 1835 UNP P33334 EXPRESSION TAG SEQADV 5R1C GLY B -3 UNP P32357 EXPRESSION TAG SEQADV 5R1C ALA B -2 UNP P32357 EXPRESSION TAG SEQADV 5R1C MET B -1 UNP P32357 EXPRESSION TAG SEQADV 5R1C ALA B 0 UNP P32357 EXPRESSION TAG SEQADV 5R1C SER B 166 UNP P32357 LEU 153 CONFLICT SEQADV 5R1C SER B 167 UNP P32357 LYS 154 CONFLICT SEQADV 5R1C SER B 170 UNP P32357 LEU 157 CONFLICT SEQADV 5R1C B UNP P32357 GLN 158 DELETION SEQADV 5R1C B UNP P32357 LYS 159 DELETION SEQADV 5R1C B UNP P32357 ALA 160 DELETION SEQADV 5R1C B UNP P32357 GLY 161 DELETION SEQADV 5R1C B UNP P32357 SER 162 DELETION SEQADV 5R1C B UNP P32357 LYS 163 DELETION SEQADV 5R1C B UNP P32357 MET 164 DELETION SEQADV 5R1C B UNP P32357 GLU 165 DELETION SEQADV 5R1C B UNP P32357 ALA 166 DELETION SEQADV 5R1C B UNP P32357 LYS 167 DELETION SEQADV 5R1C B UNP P32357 ASN 168 DELETION SEQADV 5R1C B UNP P32357 GLU 169 DELETION SEQADV 5R1C B UNP P32357 ASP 170 DELETION SEQRES 1 A 258 GLY ALA MET ASN SER SER ASN TYR ALA GLU LEU PHE ASN SEQRES 2 A 258 ASN ASP ILE LYS LEU PHE VAL ASP ASP THR ASN VAL TYR SEQRES 3 A 258 ARG VAL THR VAL HIS LYS THR PHE GLU GLY ASN VAL ALA SEQRES 4 A 258 THR LYS ALA ILE ASN GLY CYS ILE PHE THR LEU ASN PRO SEQRES 5 A 258 LYS THR GLY HIS LEU PHE LEU LYS ILE ILE HIS THR SER SEQRES 6 A 258 VAL TRP ALA GLY GLN LYS ARG LEU SER GLN LEU ALA LYS SEQRES 7 A 258 TRP LYS THR ALA GLU GLU VAL SER ALA LEU VAL ARG SER SEQRES 8 A 258 LEU PRO LYS GLU GLU GLN PRO LYS GLN ILE ILE VAL THR SEQRES 9 A 258 ARG LYS ALA MET LEU ASP PRO LEU GLU VAL HIS MET LEU SEQRES 10 A 258 ASP PHE PRO ASN ILE ALA ILE ARG PRO THR GLU LEU ARG SEQRES 11 A 258 LEU PRO PHE SER ALA ALA MET SER ILE ASP LYS LEU SER SEQRES 12 A 258 ASP VAL VAL MET LYS ALA THR GLU PRO GLN MET VAL LEU SEQRES 13 A 258 PHE ASN ILE TYR ASP ASP TRP LEU ASP ARG ILE SER SER SEQRES 14 A 258 TYR THR ALA PHE SER ARG LEU THR LEU LEU LEU ARG ALA SEQRES 15 A 258 LEU LYS THR ASN GLU GLU SER ALA LYS MET ILE LEU LEU SEQRES 16 A 258 SER ASP PRO THR ILE THR ILE LYS SER TYR HIS LEU TRP SEQRES 17 A 258 PRO SER PHE THR ASP GLU GLN TRP ILE THR ILE GLU SER SEQRES 18 A 258 GLN MET ARG ASP LEU ILE LEU THR GLU TYR GLY ARG LYS SEQRES 19 A 258 TYR ASN VAL ASN ILE SER ALA LEU THR GLN THR GLU ILE SEQRES 20 A 258 LYS ASP ILE ILE LEU GLY GLN ASN ILE LYS ALA SEQRES 1 B 308 GLY ALA MET ALA MET ASN THR VAL PRO PHE THR SER ALA SEQRES 2 B 308 PRO ILE GLU VAL THR ILE GLY ILE ASP GLN TYR SER PHE SEQRES 3 B 308 ASN VAL LYS GLU ASN GLN PRO PHE HIS GLY ILE LYS ASP SEQRES 4 B 308 ILE PRO ILE GLY HIS VAL HIS VAL ILE HIS PHE GLN HIS SEQRES 5 B 308 ALA ASP ASN SER SER MET ARG TYR GLY TYR TRP PHE ASP SEQRES 6 B 308 CYS ARG MET GLY ASN PHE TYR ILE GLN TYR ASP PRO LYS SEQRES 7 B 308 ASP GLY LEU TYR LYS MET MET GLU GLU ARG ASP GLY ALA SEQRES 8 B 308 LYS PHE GLU ASN ILE VAL HIS ASN PHE LYS GLU ARG GLN SEQRES 9 B 308 MET MET VAL SER TYR PRO LYS ILE ASP GLU ASP ASP THR SEQRES 10 B 308 TRP TYR ASN LEU THR GLU PHE VAL GLN MET ASP LYS ILE SEQRES 11 B 308 ARG LYS ILE VAL ARG LYS ASP GLU ASN GLN PHE SER TYR SEQRES 12 B 308 VAL ASP SER SER MET THR THR VAL GLN GLU ASN GLU LEU SEQRES 13 B 308 SER SER SER SER SER ASP PRO ALA HIS SER LEU ASN TYR SEQRES 14 B 308 THR VAL ILE ASN PHE LYS SER ARG GLU ALA ILE ARG PRO SEQRES 15 B 308 GLY HIS GLU MET GLU ASP PHE LEU ASP LYS SER TYR TYR SEQRES 16 B 308 LEU ASN THR VAL MET LEU GLN GLY ILE PHE LYS ASN SER SEQRES 17 B 308 SER ASN TYR PHE GLY GLU LEU GLN PHE ALA PHE LEU ASN SEQRES 18 B 308 ALA MET PHE PHE GLY ASN TYR GLY SER SER LEU GLN TRP SEQRES 19 B 308 HIS ALA MET ILE GLU LEU ILE CYS SER SER ALA THR VAL SEQRES 20 B 308 PRO LYS HIS MET LEU ASP LYS LEU ASP GLU ILE LEU TYR SEQRES 21 B 308 TYR GLN ILE LYS THR LEU PRO GLU GLN TYR SER ASP ILE SEQRES 22 B 308 LEU LEU ASN GLU ARG VAL TRP ASN ILE CYS LEU TYR SER SEQRES 23 B 308 SER PHE GLN LYS ASN SER LEU HIS ASN THR GLU LYS ILE SEQRES 24 B 308 MET GLU ASN LYS TYR PRO GLU LEU LEU FORMUL 3 HOH *85(H2 O) HELIX 1 AA1 ASN A 1836 ASN A 1845 5 10 HELIX 2 AA2 HIS A 1895 ALA A 1900 5 6 HELIX 3 AA3 ARG A 1904 LEU A 1924 1 21 HELIX 4 AA4 PRO A 1925 GLN A 1929 5 5 HELIX 5 AA5 ARG A 1937 ALA A 1939 5 3 HELIX 6 AA6 MET A 1940 MET A 1948 1 9 HELIX 7 AA7 PRO A 1964 SER A 1970 5 7 HELIX 8 AA8 ILE A 1971 ALA A 1981 1 11 HELIX 9 AA9 ASP A 1994 ARG A 1998 5 5 HELIX 10 AB1 SER A 2000 ASN A 2018 1 19 HELIX 11 AB2 ASN A 2018 SER A 2028 1 11 HELIX 12 AB3 THR A 2044 ASN A 2068 1 25 HELIX 13 AB4 ASP B 61 GLY B 65 5 5 HELIX 14 AB5 ASP B 85 GLN B 100 1 16 HELIX 15 AB6 ASP B 112 GLU B 119 1 8 HELIX 16 AB7 GLN B 122 VAL B 130 1 9 HELIX 17 AB8 THR B 146 LEU B 152 1 7 HELIX 18 AB9 ASP B 171 SER B 175 5 5 HELIX 19 AC1 HIS B 193 ASP B 200 1 8 HELIX 20 AC2 LYS B 201 THR B 207 1 7 HELIX 21 AC3 ASN B 216 GLY B 235 1 20 HELIX 22 AC4 ASN B 236 SER B 252 1 17 HELIX 23 AC5 PRO B 257 LEU B 275 1 19 HELIX 24 AC6 PRO B 276 SER B 280 5 5 HELIX 25 AC7 ASN B 285 SER B 295 1 11 HELIX 26 AC8 GLN B 298 SER B 301 5 4 HELIX 27 AC9 LEU B 302 TYR B 313 1 12 SHEET 1 AA1 6 ALA A1955 ARG A1957 0 SHEET 2 AA1 6 GLN A1932 VAL A1935 1 N ILE A1933 O ARG A1957 SHEET 3 AA1 6 LYS A1849 ASP A1853 1 N VAL A1852 O ILE A1934 SHEET 4 AA1 6 GLY A1877 LEU A1882 -1 O LEU A1882 N PHE A1851 SHEET 5 AA1 6 HIS A1888 ILE A1894 -1 O ILE A1894 N GLY A1877 SHEET 6 AA1 6 GLN A1985 ASN A1990 -1 O VAL A1987 N LEU A1891 SHEET 1 AA2 2 ARG A1859 LYS A1864 0 SHEET 2 AA2 2 VAL A1870 ILE A1875 -1 O ILE A1875 N ARG A1859 SHEET 1 AA3 3 ASN B 2 PRO B 5 0 SHEET 2 AA3 3 GLY B 32 ILE B 36 -1 O ILE B 33 N VAL B 4 SHEET 3 AA3 3 VAL B 103 SER B 104 1 O VAL B 103 N LYS B 34 SHEET 1 AA4 5 TYR B 20 VAL B 24 0 SHEET 2 AA4 5 VAL B 13 ILE B 17 -1 N ILE B 15 O PHE B 22 SHEET 3 AA4 5 HIS B 42 HIS B 48 -1 O HIS B 45 N GLY B 16 SHEET 4 AA4 5 TYR B 56 PHE B 60 -1 O TYR B 56 N PHE B 46 SHEET 5 AA4 5 SER B 138 ASP B 141 -1 O SER B 138 N TRP B 59 SHEET 1 AA5 2 ASN B 66 ASP B 72 0 SHEET 2 AA5 2 LEU B 77 GLU B 83 -1 O MET B 81 N TYR B 68 CRYST1 89.432 82.562 92.843 90.00 108.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011182 0.000000 0.003652 0.00000 SCALE2 0.000000 0.012112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011331 0.00000