data_5R4V # _entry.id 5R4V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5R4V pdb_00005r4v 10.2210/pdb5r4v/pdb WWPDB D_1001402772 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-05-13 2 'Structure model' 1 1 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 5R4V _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2020-02-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Talon, R.' 1 ? 'Krojer, T.' 2 ? 'Fairhead, M.' 3 ? 'Sethi, R.' 4 ? 'Bradley, A.R.' 5 ? 'Aimon, A.' 6 ? 'Collins, P.' 7 ? 'Brandao-Neto, J.' 8 ? 'Douangamath, A.' 9 ? 'Wright, N.' 10 ? 'MacLean, E.' 11 ? 'Zhang, R.' 12 ? 'Dias, A.' 13 ? 'Brennan, P.E.' 14 ? 'Bountra, C.' 15 ? 'Arrowsmith, C.H.' 16 ? 'Edwards, A.' 17 ? 'von Delft, F.' 18 ? # _citation.id primary _citation.title 'XChem fragment screen' _citation.journal_abbrev 'To Be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Talon, R.' ? 1 primary 'Krojer, T.' ? 2 primary 'Fairhead, M.' ? 3 primary 'Sethi, R.' ? 4 primary 'Bradley, A.R.' ? 5 primary 'Aimon, A.' ? 6 primary 'Collins, P.' ? 7 primary 'Brandao-Neto, J.' ? 8 primary 'Douangamath, A.' ? 9 primary 'Wright, N.' ? 10 primary 'MacLean, E.' ? 11 primary 'Zhang, R.' ? 12 primary 'Dias, A.' ? 13 primary 'Brennan, P.E.' ? 14 primary 'Bountra, C.' ? 15 primary 'Arrowsmith, C.H.' ? 16 primary 'Edwards, A.' ? 17 primary 'von Delft, F.' ? 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATPase family AAA domain-containing protein 2' 15512.562 1 3.6.1.3 ? ? ? 2 non-polymer syn '[4-(cyclopropanecarbonyl)piperazin-1-yl](furan-2-yl)methanone' 248.278 2 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 5 water nat water 18.015 237 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'AAA nuclear coregulator cancer-associated protein,ANCCA' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMQEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYRTVIKEPMDLSSVISKIDLHKYLTVKDYLRDIDLICS NALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR ; _entity_poly.pdbx_seq_one_letter_code_can ;SMQEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYRTVIKEPMDLSSVISKIDLHKYLTVKDYLRDIDLICS NALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '[4-(cyclopropanecarbonyl)piperazin-1-yl](furan-2-yl)methanone' JMM 3 'SULFATE ION' SO4 4 1,2-ETHANEDIOL EDO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLN n 1 4 GLU n 1 5 GLU n 1 6 ASP n 1 7 THR n 1 8 PHE n 1 9 ARG n 1 10 GLU n 1 11 LEU n 1 12 ARG n 1 13 ILE n 1 14 PHE n 1 15 LEU n 1 16 ARG n 1 17 ASN n 1 18 VAL n 1 19 THR n 1 20 HIS n 1 21 ARG n 1 22 LEU n 1 23 ALA n 1 24 ILE n 1 25 ASP n 1 26 LYS n 1 27 ARG n 1 28 PHE n 1 29 ARG n 1 30 VAL n 1 31 PHE n 1 32 THR n 1 33 LYS n 1 34 PRO n 1 35 VAL n 1 36 ASP n 1 37 PRO n 1 38 ASP n 1 39 GLU n 1 40 VAL n 1 41 PRO n 1 42 ASP n 1 43 TYR n 1 44 ARG n 1 45 THR n 1 46 VAL n 1 47 ILE n 1 48 LYS n 1 49 GLU n 1 50 PRO n 1 51 MET n 1 52 ASP n 1 53 LEU n 1 54 SER n 1 55 SER n 1 56 VAL n 1 57 ILE n 1 58 SER n 1 59 LYS n 1 60 ILE n 1 61 ASP n 1 62 LEU n 1 63 HIS n 1 64 LYS n 1 65 TYR n 1 66 LEU n 1 67 THR n 1 68 VAL n 1 69 LYS n 1 70 ASP n 1 71 TYR n 1 72 LEU n 1 73 ARG n 1 74 ASP n 1 75 ILE n 1 76 ASP n 1 77 LEU n 1 78 ILE n 1 79 CYS n 1 80 SER n 1 81 ASN n 1 82 ALA n 1 83 LEU n 1 84 GLU n 1 85 TYR n 1 86 ASN n 1 87 PRO n 1 88 ASP n 1 89 ARG n 1 90 ASP n 1 91 PRO n 1 92 GLY n 1 93 ASP n 1 94 ARG n 1 95 LEU n 1 96 ILE n 1 97 ARG n 1 98 HIS n 1 99 ARG n 1 100 ALA n 1 101 CYS n 1 102 ALA n 1 103 LEU n 1 104 ARG n 1 105 ASP n 1 106 THR n 1 107 ALA n 1 108 TYR n 1 109 ALA n 1 110 ILE n 1 111 ILE n 1 112 LYS n 1 113 GLU n 1 114 GLU n 1 115 LEU n 1 116 ASP n 1 117 GLU n 1 118 ASP n 1 119 PHE n 1 120 GLU n 1 121 GLN n 1 122 LEU n 1 123 CYS n 1 124 GLU n 1 125 GLU n 1 126 ILE n 1 127 GLN n 1 128 GLU n 1 129 SER n 1 130 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 130 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ATAD2, L16, PRO2000' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 JMM non-polymer . '[4-(cyclopropanecarbonyl)piperazin-1-yl](furan-2-yl)methanone' ? 'C13 H16 N2 O3' 248.278 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 979 979 SER SER A . n A 1 2 MET 2 980 980 MET MET A . n A 1 3 GLN 3 981 981 GLN GLN A . n A 1 4 GLU 4 982 982 GLU GLU A . n A 1 5 GLU 5 983 983 GLU GLU A . n A 1 6 ASP 6 984 984 ASP ASP A . n A 1 7 THR 7 985 985 THR THR A . n A 1 8 PHE 8 986 986 PHE PHE A . n A 1 9 ARG 9 987 987 ARG ARG A . n A 1 10 GLU 10 988 988 GLU GLU A . n A 1 11 LEU 11 989 989 LEU LEU A . n A 1 12 ARG 12 990 990 ARG ARG A . n A 1 13 ILE 13 991 991 ILE ILE A . n A 1 14 PHE 14 992 992 PHE PHE A . n A 1 15 LEU 15 993 993 LEU LEU A . n A 1 16 ARG 16 994 994 ARG ARG A . n A 1 17 ASN 17 995 995 ASN ASN A . n A 1 18 VAL 18 996 996 VAL VAL A . n A 1 19 THR 19 997 997 THR THR A . n A 1 20 HIS 20 998 998 HIS HIS A . n A 1 21 ARG 21 999 999 ARG ARG A . n A 1 22 LEU 22 1000 1000 LEU LEU A . n A 1 23 ALA 23 1001 1001 ALA ALA A . n A 1 24 ILE 24 1002 1002 ILE ILE A . n A 1 25 ASP 25 1003 1003 ASP ASP A . n A 1 26 LYS 26 1004 1004 LYS LYS A . n A 1 27 ARG 27 1005 1005 ARG ARG A . n A 1 28 PHE 28 1006 1006 PHE PHE A . n A 1 29 ARG 29 1007 1007 ARG ARG A . n A 1 30 VAL 30 1008 1008 VAL VAL A . n A 1 31 PHE 31 1009 1009 PHE PHE A . n A 1 32 THR 32 1010 1010 THR THR A . n A 1 33 LYS 33 1011 1011 LYS LYS A . n A 1 34 PRO 34 1012 1012 PRO PRO A . n A 1 35 VAL 35 1013 1013 VAL VAL A . n A 1 36 ASP 36 1014 1014 ASP ASP A . n A 1 37 PRO 37 1015 1015 PRO PRO A . n A 1 38 ASP 38 1016 1016 ASP ASP A . n A 1 39 GLU 39 1017 1017 GLU GLU A . n A 1 40 VAL 40 1018 1018 VAL VAL A . n A 1 41 PRO 41 1019 1019 PRO PRO A . n A 1 42 ASP 42 1020 1020 ASP ASP A . n A 1 43 TYR 43 1021 1021 TYR TYR A . n A 1 44 ARG 44 1022 1022 ARG ARG A . n A 1 45 THR 45 1023 1023 THR THR A . n A 1 46 VAL 46 1024 1024 VAL VAL A . n A 1 47 ILE 47 1025 1025 ILE ILE A . n A 1 48 LYS 48 1026 1026 LYS LYS A . n A 1 49 GLU 49 1027 1027 GLU GLU A . n A 1 50 PRO 50 1028 1028 PRO PRO A . n A 1 51 MET 51 1029 1029 MET MET A . n A 1 52 ASP 52 1030 1030 ASP ASP A . n A 1 53 LEU 53 1031 1031 LEU LEU A . n A 1 54 SER 54 1032 1032 SER SER A . n A 1 55 SER 55 1033 1033 SER SER A . n A 1 56 VAL 56 1034 1034 VAL VAL A . n A 1 57 ILE 57 1035 1035 ILE ILE A . n A 1 58 SER 58 1036 1036 SER SER A . n A 1 59 LYS 59 1037 1037 LYS LYS A . n A 1 60 ILE 60 1038 1038 ILE ILE A . n A 1 61 ASP 61 1039 1039 ASP ASP A . n A 1 62 LEU 62 1040 1040 LEU LEU A . n A 1 63 HIS 63 1041 1041 HIS HIS A . n A 1 64 LYS 64 1042 1042 LYS LYS A . n A 1 65 TYR 65 1043 1043 TYR TYR A . n A 1 66 LEU 66 1044 1044 LEU LEU A . n A 1 67 THR 67 1045 1045 THR THR A . n A 1 68 VAL 68 1046 1046 VAL VAL A . n A 1 69 LYS 69 1047 1047 LYS LYS A . n A 1 70 ASP 70 1048 1048 ASP ASP A . n A 1 71 TYR 71 1049 1049 TYR TYR A . n A 1 72 LEU 72 1050 1050 LEU LEU A . n A 1 73 ARG 73 1051 1051 ARG ARG A . n A 1 74 ASP 74 1052 1052 ASP ASP A . n A 1 75 ILE 75 1053 1053 ILE ILE A . n A 1 76 ASP 76 1054 1054 ASP ASP A . n A 1 77 LEU 77 1055 1055 LEU LEU A . n A 1 78 ILE 78 1056 1056 ILE ILE A . n A 1 79 CYS 79 1057 1057 CYS CYS A . n A 1 80 SER 80 1058 1058 SER SER A . n A 1 81 ASN 81 1059 1059 ASN ASN A . n A 1 82 ALA 82 1060 1060 ALA ALA A . n A 1 83 LEU 83 1061 1061 LEU LEU A . n A 1 84 GLU 84 1062 1062 GLU GLU A . n A 1 85 TYR 85 1063 1063 TYR TYR A . n A 1 86 ASN 86 1064 1064 ASN ASN A . n A 1 87 PRO 87 1065 1065 PRO PRO A . n A 1 88 ASP 88 1066 1066 ASP ASP A . n A 1 89 ARG 89 1067 1067 ARG ARG A . n A 1 90 ASP 90 1068 1068 ASP ASP A . n A 1 91 PRO 91 1069 1069 PRO PRO A . n A 1 92 GLY 92 1070 1070 GLY GLY A . n A 1 93 ASP 93 1071 1071 ASP ASP A . n A 1 94 ARG 94 1072 1072 ARG ARG A . n A 1 95 LEU 95 1073 1073 LEU LEU A . n A 1 96 ILE 96 1074 1074 ILE ILE A . n A 1 97 ARG 97 1075 1075 ARG ARG A . n A 1 98 HIS 98 1076 1076 HIS HIS A . n A 1 99 ARG 99 1077 1077 ARG ARG A . n A 1 100 ALA 100 1078 1078 ALA ALA A . n A 1 101 CYS 101 1079 1079 CYS CYS A . n A 1 102 ALA 102 1080 1080 ALA ALA A . n A 1 103 LEU 103 1081 1081 LEU LEU A . n A 1 104 ARG 104 1082 1082 ARG ARG A . n A 1 105 ASP 105 1083 1083 ASP ASP A . n A 1 106 THR 106 1084 1084 THR THR A . n A 1 107 ALA 107 1085 1085 ALA ALA A . n A 1 108 TYR 108 1086 1086 TYR TYR A . n A 1 109 ALA 109 1087 1087 ALA ALA A . n A 1 110 ILE 110 1088 1088 ILE ILE A . n A 1 111 ILE 111 1089 1089 ILE ILE A . n A 1 112 LYS 112 1090 1090 LYS LYS A . n A 1 113 GLU 113 1091 1091 GLU GLU A . n A 1 114 GLU 114 1092 1092 GLU GLU A . n A 1 115 LEU 115 1093 1093 LEU LEU A . n A 1 116 ASP 116 1094 1094 ASP ASP A . n A 1 117 GLU 117 1095 1095 GLU GLU A . n A 1 118 ASP 118 1096 1096 ASP ASP A . n A 1 119 PHE 119 1097 1097 PHE PHE A . n A 1 120 GLU 120 1098 1098 GLU GLU A . n A 1 121 GLN 121 1099 1099 GLN GLN A . n A 1 122 LEU 122 1100 1100 LEU LEU A . n A 1 123 CYS 123 1101 1101 CYS CYS A . n A 1 124 GLU 124 1102 1102 GLU GLU A . n A 1 125 GLU 125 1103 1103 GLU GLU A . n A 1 126 ILE 126 1104 1104 ILE ILE A . n A 1 127 GLN 127 1105 1105 GLN GLN A . n A 1 128 GLU 128 1106 1106 GLU GLU A . n A 1 129 SER 129 1107 1107 SER SER A . n A 1 130 ARG 130 1108 1108 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JMM 1 1201 1201 JMM LIG A . C 2 JMM 1 1202 1301 JMM LIG A . D 3 SO4 1 1203 1 SO4 SO4 A . E 3 SO4 1 1204 2 SO4 SO4 A . F 4 EDO 1 1205 3 EDO EDO A . G 4 EDO 1 1206 5 EDO EDO A . H 4 EDO 1 1207 6 EDO EDO A . I 5 HOH 1 1301 259 HOH HOH A . I 5 HOH 2 1302 34 HOH HOH A . I 5 HOH 3 1303 158 HOH HOH A . I 5 HOH 4 1304 144 HOH HOH A . I 5 HOH 5 1305 134 HOH HOH A . I 5 HOH 6 1306 79 HOH HOH A . I 5 HOH 7 1307 268 HOH HOH A . I 5 HOH 8 1308 142 HOH HOH A . I 5 HOH 9 1309 271 HOH HOH A . I 5 HOH 10 1310 177 HOH HOH A . I 5 HOH 11 1311 272 HOH HOH A . I 5 HOH 12 1312 258 HOH HOH A . I 5 HOH 13 1313 87 HOH HOH A . I 5 HOH 14 1314 191 HOH HOH A . I 5 HOH 15 1315 163 HOH HOH A . I 5 HOH 16 1316 128 HOH HOH A . I 5 HOH 17 1317 5 HOH HOH A . I 5 HOH 18 1318 68 HOH HOH A . I 5 HOH 19 1319 59 HOH HOH A . I 5 HOH 20 1320 111 HOH HOH A . I 5 HOH 21 1321 236 HOH HOH A . I 5 HOH 22 1322 246 HOH HOH A . I 5 HOH 23 1323 28 HOH HOH A . I 5 HOH 24 1324 27 HOH HOH A . I 5 HOH 25 1325 162 HOH HOH A . I 5 HOH 26 1326 118 HOH HOH A . I 5 HOH 27 1327 50 HOH HOH A . I 5 HOH 28 1328 165 HOH HOH A . I 5 HOH 29 1329 203 HOH HOH A . I 5 HOH 30 1330 113 HOH HOH A . I 5 HOH 31 1331 20 HOH HOH A . I 5 HOH 32 1332 32 HOH HOH A . I 5 HOH 33 1333 100 HOH HOH A . I 5 HOH 34 1334 98 HOH HOH A . I 5 HOH 35 1335 171 HOH HOH A . I 5 HOH 36 1336 106 HOH HOH A . I 5 HOH 37 1337 76 HOH HOH A . I 5 HOH 38 1338 55 HOH HOH A . I 5 HOH 39 1339 9 HOH HOH A . I 5 HOH 40 1340 77 HOH HOH A . I 5 HOH 41 1341 16 HOH HOH A . I 5 HOH 42 1342 22 HOH HOH A . I 5 HOH 43 1343 161 HOH HOH A . I 5 HOH 44 1344 29 HOH HOH A . I 5 HOH 45 1345 47 HOH HOH A . I 5 HOH 46 1346 75 HOH HOH A . I 5 HOH 47 1347 23 HOH HOH A . I 5 HOH 48 1348 43 HOH HOH A . I 5 HOH 49 1349 25 HOH HOH A . I 5 HOH 50 1350 2 HOH HOH A . I 5 HOH 51 1351 21 HOH HOH A . I 5 HOH 52 1352 80 HOH HOH A . I 5 HOH 53 1353 189 HOH HOH A . I 5 HOH 54 1354 234 HOH HOH A . I 5 HOH 55 1355 99 HOH HOH A . I 5 HOH 56 1356 64 HOH HOH A . I 5 HOH 57 1357 13 HOH HOH A . I 5 HOH 58 1358 56 HOH HOH A . I 5 HOH 59 1359 45 HOH HOH A . I 5 HOH 60 1360 31 HOH HOH A . I 5 HOH 61 1361 200 HOH HOH A . I 5 HOH 62 1362 1 HOH HOH A . I 5 HOH 63 1363 61 HOH HOH A . I 5 HOH 64 1364 19 HOH HOH A . I 5 HOH 65 1365 89 HOH HOH A . I 5 HOH 66 1366 197 HOH HOH A . I 5 HOH 67 1367 240 HOH HOH A . I 5 HOH 68 1368 46 HOH HOH A . I 5 HOH 69 1369 129 HOH HOH A . I 5 HOH 70 1370 17 HOH HOH A . I 5 HOH 71 1371 33 HOH HOH A . I 5 HOH 72 1372 257 HOH HOH A . I 5 HOH 73 1373 120 HOH HOH A . I 5 HOH 74 1374 42 HOH HOH A . I 5 HOH 75 1375 14 HOH HOH A . I 5 HOH 76 1376 172 HOH HOH A . I 5 HOH 77 1377 7 HOH HOH A . I 5 HOH 78 1378 62 HOH HOH A . I 5 HOH 79 1379 154 HOH HOH A . I 5 HOH 80 1380 109 HOH HOH A . I 5 HOH 81 1381 15 HOH HOH A . I 5 HOH 82 1382 52 HOH HOH A . I 5 HOH 83 1383 24 HOH HOH A . I 5 HOH 84 1384 131 HOH HOH A . I 5 HOH 85 1385 139 HOH HOH A . I 5 HOH 86 1386 73 HOH HOH A . I 5 HOH 87 1387 67 HOH HOH A . I 5 HOH 88 1388 192 HOH HOH A . I 5 HOH 89 1389 141 HOH HOH A . I 5 HOH 90 1390 48 HOH HOH A . I 5 HOH 91 1391 107 HOH HOH A . I 5 HOH 92 1392 6 HOH HOH A . I 5 HOH 93 1393 4 HOH HOH A . I 5 HOH 94 1394 105 HOH HOH A . I 5 HOH 95 1395 132 HOH HOH A . I 5 HOH 96 1396 187 HOH HOH A . I 5 HOH 97 1397 104 HOH HOH A . I 5 HOH 98 1398 85 HOH HOH A . I 5 HOH 99 1399 92 HOH HOH A . I 5 HOH 100 1400 36 HOH HOH A . I 5 HOH 101 1401 12 HOH HOH A . I 5 HOH 102 1402 40 HOH HOH A . I 5 HOH 103 1403 221 HOH HOH A . I 5 HOH 104 1404 70 HOH HOH A . I 5 HOH 105 1405 176 HOH HOH A . I 5 HOH 106 1406 102 HOH HOH A . I 5 HOH 107 1407 39 HOH HOH A . I 5 HOH 108 1408 115 HOH HOH A . I 5 HOH 109 1409 256 HOH HOH A . I 5 HOH 110 1410 116 HOH HOH A . I 5 HOH 111 1411 58 HOH HOH A . I 5 HOH 112 1412 101 HOH HOH A . I 5 HOH 113 1413 88 HOH HOH A . I 5 HOH 114 1414 83 HOH HOH A . I 5 HOH 115 1415 90 HOH HOH A . I 5 HOH 116 1416 201 HOH HOH A . I 5 HOH 117 1417 51 HOH HOH A . I 5 HOH 118 1418 54 HOH HOH A . I 5 HOH 119 1419 18 HOH HOH A . I 5 HOH 120 1420 3 HOH HOH A . I 5 HOH 121 1421 49 HOH HOH A . I 5 HOH 122 1422 86 HOH HOH A . I 5 HOH 123 1423 155 HOH HOH A . I 5 HOH 124 1424 123 HOH HOH A . I 5 HOH 125 1425 72 HOH HOH A . I 5 HOH 126 1426 247 HOH HOH A . I 5 HOH 127 1427 78 HOH HOH A . I 5 HOH 128 1428 82 HOH HOH A . I 5 HOH 129 1429 209 HOH HOH A . I 5 HOH 130 1430 237 HOH HOH A . I 5 HOH 131 1431 196 HOH HOH A . I 5 HOH 132 1432 147 HOH HOH A . I 5 HOH 133 1433 97 HOH HOH A . I 5 HOH 134 1434 53 HOH HOH A . I 5 HOH 135 1435 11 HOH HOH A . I 5 HOH 136 1436 260 HOH HOH A . I 5 HOH 137 1437 30 HOH HOH A . I 5 HOH 138 1438 216 HOH HOH A . I 5 HOH 139 1439 94 HOH HOH A . I 5 HOH 140 1440 124 HOH HOH A . I 5 HOH 141 1441 95 HOH HOH A . I 5 HOH 142 1442 207 HOH HOH A . I 5 HOH 143 1443 190 HOH HOH A . I 5 HOH 144 1444 26 HOH HOH A . I 5 HOH 145 1445 10 HOH HOH A . I 5 HOH 146 1446 38 HOH HOH A . I 5 HOH 147 1447 254 HOH HOH A . I 5 HOH 148 1448 57 HOH HOH A . I 5 HOH 149 1449 130 HOH HOH A . I 5 HOH 150 1450 96 HOH HOH A . I 5 HOH 151 1451 215 HOH HOH A . I 5 HOH 152 1452 179 HOH HOH A . I 5 HOH 153 1453 93 HOH HOH A . I 5 HOH 154 1454 230 HOH HOH A . I 5 HOH 155 1455 243 HOH HOH A . I 5 HOH 156 1456 175 HOH HOH A . I 5 HOH 157 1457 114 HOH HOH A . I 5 HOH 158 1458 184 HOH HOH A . I 5 HOH 159 1459 122 HOH HOH A . I 5 HOH 160 1460 213 HOH HOH A . I 5 HOH 161 1461 140 HOH HOH A . I 5 HOH 162 1462 164 HOH HOH A . I 5 HOH 163 1463 41 HOH HOH A . I 5 HOH 164 1464 110 HOH HOH A . I 5 HOH 165 1465 199 HOH HOH A . I 5 HOH 166 1466 263 HOH HOH A . I 5 HOH 167 1467 167 HOH HOH A . I 5 HOH 168 1468 186 HOH HOH A . I 5 HOH 169 1469 81 HOH HOH A . I 5 HOH 170 1470 91 HOH HOH A . I 5 HOH 171 1471 188 HOH HOH A . I 5 HOH 172 1472 69 HOH HOH A . I 5 HOH 173 1473 60 HOH HOH A . I 5 HOH 174 1474 261 HOH HOH A . I 5 HOH 175 1475 152 HOH HOH A . I 5 HOH 176 1476 150 HOH HOH A . I 5 HOH 177 1477 135 HOH HOH A . I 5 HOH 178 1478 159 HOH HOH A . I 5 HOH 179 1479 244 HOH HOH A . I 5 HOH 180 1480 224 HOH HOH A . I 5 HOH 181 1481 248 HOH HOH A . I 5 HOH 182 1482 37 HOH HOH A . I 5 HOH 183 1483 151 HOH HOH A . I 5 HOH 184 1484 250 HOH HOH A . I 5 HOH 185 1485 217 HOH HOH A . I 5 HOH 186 1486 225 HOH HOH A . I 5 HOH 187 1487 119 HOH HOH A . I 5 HOH 188 1488 8 HOH HOH A . I 5 HOH 189 1489 143 HOH HOH A . I 5 HOH 190 1490 146 HOH HOH A . I 5 HOH 191 1491 174 HOH HOH A . I 5 HOH 192 1492 183 HOH HOH A . I 5 HOH 193 1493 112 HOH HOH A . I 5 HOH 194 1494 103 HOH HOH A . I 5 HOH 195 1495 160 HOH HOH A . I 5 HOH 196 1496 220 HOH HOH A . I 5 HOH 197 1497 157 HOH HOH A . I 5 HOH 198 1498 210 HOH HOH A . I 5 HOH 199 1499 264 HOH HOH A . I 5 HOH 200 1500 185 HOH HOH A . I 5 HOH 201 1501 137 HOH HOH A . I 5 HOH 202 1502 71 HOH HOH A . I 5 HOH 203 1503 206 HOH HOH A . I 5 HOH 204 1504 233 HOH HOH A . I 5 HOH 205 1505 84 HOH HOH A . I 5 HOH 206 1506 66 HOH HOH A . I 5 HOH 207 1507 145 HOH HOH A . I 5 HOH 208 1508 125 HOH HOH A . I 5 HOH 209 1509 262 HOH HOH A . I 5 HOH 210 1510 44 HOH HOH A . I 5 HOH 211 1511 63 HOH HOH A . I 5 HOH 212 1512 74 HOH HOH A . I 5 HOH 213 1513 270 HOH HOH A . I 5 HOH 214 1514 148 HOH HOH A . I 5 HOH 215 1515 211 HOH HOH A . I 5 HOH 216 1516 127 HOH HOH A . I 5 HOH 217 1517 149 HOH HOH A . I 5 HOH 218 1518 117 HOH HOH A . I 5 HOH 219 1519 245 HOH HOH A . I 5 HOH 220 1520 266 HOH HOH A . I 5 HOH 221 1521 168 HOH HOH A . I 5 HOH 222 1522 249 HOH HOH A . I 5 HOH 223 1523 205 HOH HOH A . I 5 HOH 224 1524 181 HOH HOH A . I 5 HOH 225 1525 255 HOH HOH A . I 5 HOH 226 1526 267 HOH HOH A . I 5 HOH 227 1527 178 HOH HOH A . I 5 HOH 228 1528 194 HOH HOH A . I 5 HOH 229 1529 180 HOH HOH A . I 5 HOH 230 1530 265 HOH HOH A . I 5 HOH 231 1531 35 HOH HOH A . I 5 HOH 232 1532 202 HOH HOH A . I 5 HOH 233 1533 269 HOH HOH A . I 5 HOH 234 1534 136 HOH HOH A . I 5 HOH 235 1535 214 HOH HOH A . I 5 HOH 236 1536 204 HOH HOH A . I 5 HOH 237 1537 121 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 1004 ? CG ? A LYS 26 CG 2 1 Y 1 A LYS 1004 ? CD ? A LYS 26 CD 3 1 Y 1 A LYS 1004 ? CE ? A LYS 26 CE 4 1 Y 1 A LYS 1004 ? NZ ? A LYS 26 NZ # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.8.0258 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 Aimless 0.5.17 21/10/15 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 PDB_EXTRACT 3.23 'SEP. 23, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? program ? ? 'data reduction' ? ? ? 5 REFMAC . ? program ? ? phasing ? ? ? # _cell.entry_id 5R4V _cell.length_a 80.190 _cell.length_b 80.190 _cell.length_c 140.100 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R4V _symmetry.Int_Tables_number 179 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.crystals_number 1 _exptl.entry_id 5R4V _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.000 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 4.2 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 70.7 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '2.2M ammonium sulfate, 0.1M bis-tris pH 5.5' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2015-11-21 _diffrn_detector.diffrn_id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92819 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_wavelength_list 0.92819 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5R4V _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 69.450 _reflns.d_resolution_high 1.290 _reflns.number_obs 67524 _reflns.number_all ? _reflns.percent_possible_obs 100.000 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.100 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 15.900 _reflns.pdbx_Rrim_I_all 0.061 _reflns.pdbx_Rpim_I_all 0.015 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 1070783 _reflns.pdbx_scaling_rejects 0 _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? _reflns.pdbx_CC_star ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star 1 1 1.290 1.320 ? 38694 ? ? 1.428 ? ? ? 7.900 ? 1.400 ? 4884 ? ? ? ? 100.000 1.528 0.535 0.533 ? 1 2 5.770 69.450 ? 14832 ? ? 0.031 ? ? ? 16.200 ? 88.200 ? 915 ? ? ? ? 99.800 0.032 0.008 1.000 ? # _refine.entry_id 5R4V _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.2900 _refine.ls_d_res_low 69.4500 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9300 _refine.ls_number_reflns_obs 64030 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1337 _refine.ls_R_factor_R_work 0.1327 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1526 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 3409 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 19.4960 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.1100 _refine.aniso_B[2][2] -0.1100 _refine.aniso_B[3][3] 0.3600 _refine.aniso_B[1][2] -0.0500 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9780 _refine.correlation_coeff_Fo_to_Fc_free 0.9730 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0290 _refine.pdbx_overall_ESU_R_Free 0.0300 _refine.overall_SU_ML 0.0180 _refine.overall_SU_B 0.9850 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3DAI _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 529.720 _refine.B_iso_min 9.400 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.2900 _refine_hist.d_res_low 69.4500 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 237 _refine_hist.number_atoms_total 1379 _refine_hist.pdbx_number_residues_total 130 _refine_hist.pdbx_B_iso_mean_ligand 36.76 _refine_hist.pdbx_B_iso_mean_solvent 36.13 _refine_hist.pdbx_number_atoms_protein 1084 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1241 0.014 0.014 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1167 0.001 0.017 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1693 1.902 1.707 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2716 1.547 1.627 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 153 4.646 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 84 30.359 20.833 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 228 12.391 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 16 17.037 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 162 0.101 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1458 0.009 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 274 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 549 1.552 1.552 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 550 1.551 1.557 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 693 2.101 2.331 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2403 2.793 3.000 ? ? # _refine_ls_shell.d_res_high 1.2900 _refine_ls_shell.d_res_low 1.3230 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.8800 _refine_ls_shell.number_reflns_R_work 4615 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2760 _refine_ls_shell.R_factor_R_free 0.2800 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 259 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 4874 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # _struct.entry_id 5R4V _struct.title 'XChem fragment screen -- CRYSTAL STRUCTURE OF THE BROMODOMAIN OF THE HUMAN ATAD2 in complex with N13475a' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5R4V _struct_keywords.text ;PanDDA, SGC - Diamond I04-1 fragment screening, XChemExplorer, ATPASE FAMILY, AAA DOMAIN CONTAINING 2, ANCCA, AAA+ NUCLEAR COREGULATOR CANCER-ASSOCIATED PRO2000 PROTEIN, TWO AAA DOMAIN CONTAINING PROTEIN, SGC, STRUCTURAL GENOMICS CONSORTIUM, ATP-BINDING, BROMODOMAIN, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, SIGNALING PROTEIN, HYDROLASE-HYDROLASE INHIBITOR complex ; _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ATAD2_HUMAN _struct_ref.pdbx_db_accession Q6PL18 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNA LEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR ; _struct_ref.pdbx_align_begin 981 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5R4V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 130 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6PL18 _struct_ref_seq.db_align_beg 981 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1108 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 981 _struct_ref_seq.pdbx_auth_seq_align_end 1108 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5R4V SER A 1 ? UNP Q6PL18 ? ? 'expression tag' 979 1 1 5R4V MET A 2 ? UNP Q6PL18 ? ? 'expression tag' 980 2 1 5R4V ARG A 44 ? UNP Q6PL18 VAL 1022 conflict 1022 3 1 5R4V GLU A 49 ? UNP Q6PL18 GLN 1027 conflict 1027 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 1 ? ILE A 24 ? SER A 979 ILE A 1002 1 ? 24 HELX_P HELX_P2 AA2 ASP A 25 ? THR A 32 ? ASP A 1003 THR A 1010 5 ? 8 HELX_P HELX_P3 AA3 ASP A 42 ? ILE A 47 ? ASP A 1020 ILE A 1025 1 ? 6 HELX_P HELX_P4 AA4 ASP A 52 ? LEU A 62 ? ASP A 1030 LEU A 1040 1 ? 11 HELX_P HELX_P5 AA5 THR A 67 ? ASN A 86 ? THR A 1045 ASN A 1064 1 ? 20 HELX_P HELX_P6 AA6 ASP A 90 ? LEU A 115 ? ASP A 1068 LEU A 1093 1 ? 26 HELX_P HELX_P7 AA7 ASP A 116 ? ARG A 130 ? ASP A 1094 ARG A 1108 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A JMM 1201 ? 9 'binding site for residue JMM A 1201' AC2 Software A JMM 1202 ? 7 'binding site for residue JMM A 1202' AC3 Software A SO4 1203 ? 9 'binding site for residue SO4 A 1203' AC4 Software A SO4 1204 ? 8 'binding site for residue SO4 A 1204' AC5 Software A EDO 1205 ? 5 'binding site for residue EDO A 1205' AC6 Software A EDO 1206 ? 4 'binding site for residue EDO A 1206' AC7 Software A EDO 1207 ? 4 'binding site for residue EDO A 1207' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 VAL A 30 ? VAL A 1008 . ? 1_555 ? 2 AC1 9 PHE A 31 ? PHE A 1009 . ? 1_555 ? 3 AC1 9 GLU A 39 ? GLU A 1017 . ? 1_555 ? 4 AC1 9 VAL A 40 ? VAL A 1018 . ? 1_555 ? 5 AC1 9 TYR A 85 ? TYR A 1063 . ? 1_555 ? 6 AC1 9 ASN A 86 ? ASN A 1064 . ? 1_555 ? 7 AC1 9 ILE A 96 ? ILE A 1074 . ? 1_555 ? 8 AC1 9 HOH I . ? HOH A 1312 . ? 1_555 ? 9 AC1 9 HOH I . ? HOH A 1317 . ? 1_555 ? 10 AC2 7 VAL A 68 ? VAL A 1046 . ? 1_555 ? 11 AC2 7 LYS A 69 ? LYS A 1047 . ? 1_555 ? 12 AC2 7 TYR A 108 ? TYR A 1086 . ? 1_555 ? 13 AC2 7 ILE A 111 ? ILE A 1089 . ? 1_555 ? 14 AC2 7 LEU A 115 ? LEU A 1093 . ? 1_555 ? 15 AC2 7 GLU A 117 ? GLU A 1095 . ? 1_555 ? 16 AC2 7 GLU A 120 ? GLU A 1098 . ? 1_555 ? 17 AC3 9 ARG A 9 ? ARG A 987 . ? 6_654 ? 18 AC3 9 ARG A 12 ? ARG A 990 . ? 6_654 ? 19 AC3 9 ARG A 16 ? ARG A 994 . ? 6_654 ? 20 AC3 9 ARG A 89 ? ARG A 1067 . ? 1_555 ? 21 AC3 9 ARG A 94 ? ARG A 1072 . ? 1_555 ? 22 AC3 9 HOH I . ? HOH A 1409 . ? 6_654 ? 23 AC3 9 HOH I . ? HOH A 1424 . ? 6_654 ? 24 AC3 9 HOH I . ? HOH A 1449 . ? 6_654 ? 25 AC3 9 HOH I . ? HOH A 1503 . ? 8_665 ? 26 AC4 8 LYS A 59 ? LYS A 1037 . ? 1_555 ? 27 AC4 8 LYS A 64 ? LYS A 1042 . ? 12_564 ? 28 AC4 8 LYS A 64 ? LYS A 1042 . ? 1_555 ? 29 AC4 8 HOH I . ? HOH A 1302 . ? 1_555 ? 30 AC4 8 HOH I . ? HOH A 1302 . ? 12_564 ? 31 AC4 8 HOH I . ? HOH A 1308 . ? 1_555 ? 32 AC4 8 HOH I . ? HOH A 1395 . ? 1_555 ? 33 AC4 8 HOH I . ? HOH A 1395 . ? 12_564 ? 34 AC5 5 GLU A 10 ? GLU A 988 . ? 1_555 ? 35 AC5 5 LEU A 115 ? LEU A 1093 . ? 1_555 ? 36 AC5 5 ASP A 116 ? ASP A 1094 . ? 1_555 ? 37 AC5 5 HOH I . ? HOH A 1350 . ? 1_555 ? 38 AC5 5 HOH I . ? HOH A 1426 . ? 1_555 ? 39 AC6 4 HIS A 20 ? HIS A 998 . ? 10_665 ? 40 AC6 4 GLU A 113 ? GLU A 1091 . ? 1_555 ? 41 AC6 4 GLU A 114 ? GLU A 1092 . ? 1_555 ? 42 AC6 4 ASP A 116 ? ASP A 1094 . ? 1_555 ? 43 AC7 4 LYS A 48 ? LYS A 1026 . ? 12_564 ? 44 AC7 4 PRO A 50 ? PRO A 1028 . ? 12_564 ? 45 AC7 4 HOH I . ? HOH A 1337 . ? 1_555 ? 46 AC7 4 HOH I . ? HOH A 1347 . ? 12_564 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 ND2 A ASN 995 ? ? O A HOH 1301 ? ? 1.75 2 1 O A HOH 1372 ? ? O A HOH 1520 ? ? 2.03 3 1 O A HOH 1489 ? ? O A HOH 1509 ? ? 2.17 4 1 O2 A SO4 1204 ? ? O A HOH 1302 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 987 ? B CZ A ARG 987 ? B NH1 A ARG 987 ? B 114.82 120.30 -5.48 0.50 N 2 1 NE A ARG 987 ? C CZ A ARG 987 ? C NH1 A ARG 987 ? C 114.28 120.30 -6.02 0.50 N 3 1 NE A ARG 987 ? B CZ A ARG 987 ? B NH2 A ARG 987 ? B 124.01 120.30 3.71 0.50 N 4 1 NE A ARG 987 ? C CZ A ARG 987 ? C NH2 A ARG 987 ? C 125.11 120.30 4.81 0.50 N # _phasing.method MR # _pdbx_entry_details.entry_id 5R4V _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 1535 ? 5.88 . 2 1 O ? A HOH 1536 ? 6.53 . 3 1 O ? A HOH 1537 ? 6.65 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 JMM C10 C N N 193 JMM C13 C N N 194 JMM C17 C N N 195 JMM C01 C Y N 196 JMM C02 C Y N 197 JMM C03 C Y N 198 JMM O04 O Y N 199 JMM C05 C Y N 200 JMM C06 C N N 201 JMM O07 O N N 202 JMM N08 N N N 203 JMM C09 C N N 204 JMM N11 N N N 205 JMM C12 C N N 206 JMM C14 C N N 207 JMM O15 O N N 208 JMM C16 C N N 209 JMM C18 C N N 210 JMM H101 H N N 211 JMM H102 H N N 212 JMM H131 H N N 213 JMM H132 H N N 214 JMM H171 H N N 215 JMM H172 H N N 216 JMM H011 H N N 217 JMM H021 H N N 218 JMM H051 H N N 219 JMM H092 H N N 220 JMM H091 H N N 221 JMM H122 H N N 222 JMM H121 H N N 223 JMM H161 H N N 224 JMM H181 H N N 225 JMM H182 H N N 226 LEU N N N N 227 LEU CA C N S 228 LEU C C N N 229 LEU O O N N 230 LEU CB C N N 231 LEU CG C N N 232 LEU CD1 C N N 233 LEU CD2 C N N 234 LEU OXT O N N 235 LEU H H N N 236 LEU H2 H N N 237 LEU HA H N N 238 LEU HB2 H N N 239 LEU HB3 H N N 240 LEU HG H N N 241 LEU HD11 H N N 242 LEU HD12 H N N 243 LEU HD13 H N N 244 LEU HD21 H N N 245 LEU HD22 H N N 246 LEU HD23 H N N 247 LEU HXT H N N 248 LYS N N N N 249 LYS CA C N S 250 LYS C C N N 251 LYS O O N N 252 LYS CB C N N 253 LYS CG C N N 254 LYS CD C N N 255 LYS CE C N N 256 LYS NZ N N N 257 LYS OXT O N N 258 LYS H H N N 259 LYS H2 H N N 260 LYS HA H N N 261 LYS HB2 H N N 262 LYS HB3 H N N 263 LYS HG2 H N N 264 LYS HG3 H N N 265 LYS HD2 H N N 266 LYS HD3 H N N 267 LYS HE2 H N N 268 LYS HE3 H N N 269 LYS HZ1 H N N 270 LYS HZ2 H N N 271 LYS HZ3 H N N 272 LYS HXT H N N 273 MET N N N N 274 MET CA C N S 275 MET C C N N 276 MET O O N N 277 MET CB C N N 278 MET CG C N N 279 MET SD S N N 280 MET CE C N N 281 MET OXT O N N 282 MET H H N N 283 MET H2 H N N 284 MET HA H N N 285 MET HB2 H N N 286 MET HB3 H N N 287 MET HG2 H N N 288 MET HG3 H N N 289 MET HE1 H N N 290 MET HE2 H N N 291 MET HE3 H N N 292 MET HXT H N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 SO4 S S N N 348 SO4 O1 O N N 349 SO4 O2 O N N 350 SO4 O3 O N N 351 SO4 O4 O N N 352 THR N N N N 353 THR CA C N S 354 THR C C N N 355 THR O O N N 356 THR CB C N R 357 THR OG1 O N N 358 THR CG2 C N N 359 THR OXT O N N 360 THR H H N N 361 THR H2 H N N 362 THR HA H N N 363 THR HB H N N 364 THR HG1 H N N 365 THR HG21 H N N 366 THR HG22 H N N 367 THR HG23 H N N 368 THR HXT H N N 369 TYR N N N N 370 TYR CA C N S 371 TYR C C N N 372 TYR O O N N 373 TYR CB C N N 374 TYR CG C Y N 375 TYR CD1 C Y N 376 TYR CD2 C Y N 377 TYR CE1 C Y N 378 TYR CE2 C Y N 379 TYR CZ C Y N 380 TYR OH O N N 381 TYR OXT O N N 382 TYR H H N N 383 TYR H2 H N N 384 TYR HA H N N 385 TYR HB2 H N N 386 TYR HB3 H N N 387 TYR HD1 H N N 388 TYR HD2 H N N 389 TYR HE1 H N N 390 TYR HE2 H N N 391 TYR HH H N N 392 TYR HXT H N N 393 VAL N N N N 394 VAL CA C N S 395 VAL C C N N 396 VAL O O N N 397 VAL CB C N N 398 VAL CG1 C N N 399 VAL CG2 C N N 400 VAL OXT O N N 401 VAL H H N N 402 VAL H2 H N N 403 VAL HA H N N 404 VAL HB H N N 405 VAL HG11 H N N 406 VAL HG12 H N N 407 VAL HG13 H N N 408 VAL HG21 H N N 409 VAL HG22 H N N 410 VAL HG23 H N N 411 VAL HXT H N N 412 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 JMM C01 C02 sing Y N 182 JMM C01 C05 doub Y N 183 JMM C02 C03 doub Y N 184 JMM C05 O04 sing Y N 185 JMM O07 C06 doub N N 186 JMM C03 C06 sing N N 187 JMM C03 O04 sing Y N 188 JMM C06 N08 sing N N 189 JMM N08 C09 sing N N 190 JMM N08 C13 sing N N 191 JMM C09 C10 sing N N 192 JMM C13 C12 sing N N 193 JMM C10 N11 sing N N 194 JMM C12 N11 sing N N 195 JMM N11 C14 sing N N 196 JMM C14 O15 doub N N 197 JMM C14 C16 sing N N 198 JMM C18 C16 sing N N 199 JMM C18 C17 sing N N 200 JMM C16 C17 sing N N 201 JMM C10 H101 sing N N 202 JMM C10 H102 sing N N 203 JMM C13 H131 sing N N 204 JMM C13 H132 sing N N 205 JMM C17 H171 sing N N 206 JMM C17 H172 sing N N 207 JMM C01 H011 sing N N 208 JMM C02 H021 sing N N 209 JMM C05 H051 sing N N 210 JMM C09 H092 sing N N 211 JMM C09 H091 sing N N 212 JMM C12 H122 sing N N 213 JMM C12 H121 sing N N 214 JMM C16 H161 sing N N 215 JMM C18 H181 sing N N 216 JMM C18 H182 sing N N 217 LEU N CA sing N N 218 LEU N H sing N N 219 LEU N H2 sing N N 220 LEU CA C sing N N 221 LEU CA CB sing N N 222 LEU CA HA sing N N 223 LEU C O doub N N 224 LEU C OXT sing N N 225 LEU CB CG sing N N 226 LEU CB HB2 sing N N 227 LEU CB HB3 sing N N 228 LEU CG CD1 sing N N 229 LEU CG CD2 sing N N 230 LEU CG HG sing N N 231 LEU CD1 HD11 sing N N 232 LEU CD1 HD12 sing N N 233 LEU CD1 HD13 sing N N 234 LEU CD2 HD21 sing N N 235 LEU CD2 HD22 sing N N 236 LEU CD2 HD23 sing N N 237 LEU OXT HXT sing N N 238 LYS N CA sing N N 239 LYS N H sing N N 240 LYS N H2 sing N N 241 LYS CA C sing N N 242 LYS CA CB sing N N 243 LYS CA HA sing N N 244 LYS C O doub N N 245 LYS C OXT sing N N 246 LYS CB CG sing N N 247 LYS CB HB2 sing N N 248 LYS CB HB3 sing N N 249 LYS CG CD sing N N 250 LYS CG HG2 sing N N 251 LYS CG HG3 sing N N 252 LYS CD CE sing N N 253 LYS CD HD2 sing N N 254 LYS CD HD3 sing N N 255 LYS CE NZ sing N N 256 LYS CE HE2 sing N N 257 LYS CE HE3 sing N N 258 LYS NZ HZ1 sing N N 259 LYS NZ HZ2 sing N N 260 LYS NZ HZ3 sing N N 261 LYS OXT HXT sing N N 262 MET N CA sing N N 263 MET N H sing N N 264 MET N H2 sing N N 265 MET CA C sing N N 266 MET CA CB sing N N 267 MET CA HA sing N N 268 MET C O doub N N 269 MET C OXT sing N N 270 MET CB CG sing N N 271 MET CB HB2 sing N N 272 MET CB HB3 sing N N 273 MET CG SD sing N N 274 MET CG HG2 sing N N 275 MET CG HG3 sing N N 276 MET SD CE sing N N 277 MET CE HE1 sing N N 278 MET CE HE2 sing N N 279 MET CE HE3 sing N N 280 MET OXT HXT sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PRO N CA sing N N 305 PRO N CD sing N N 306 PRO N H sing N N 307 PRO CA C sing N N 308 PRO CA CB sing N N 309 PRO CA HA sing N N 310 PRO C O doub N N 311 PRO C OXT sing N N 312 PRO CB CG sing N N 313 PRO CB HB2 sing N N 314 PRO CB HB3 sing N N 315 PRO CG CD sing N N 316 PRO CG HG2 sing N N 317 PRO CG HG3 sing N N 318 PRO CD HD2 sing N N 319 PRO CD HD3 sing N N 320 PRO OXT HXT sing N N 321 SER N CA sing N N 322 SER N H sing N N 323 SER N H2 sing N N 324 SER CA C sing N N 325 SER CA CB sing N N 326 SER CA HA sing N N 327 SER C O doub N N 328 SER C OXT sing N N 329 SER CB OG sing N N 330 SER CB HB2 sing N N 331 SER CB HB3 sing N N 332 SER OG HG sing N N 333 SER OXT HXT sing N N 334 SO4 S O1 doub N N 335 SO4 S O2 doub N N 336 SO4 S O3 sing N N 337 SO4 S O4 sing N N 338 THR N CA sing N N 339 THR N H sing N N 340 THR N H2 sing N N 341 THR CA C sing N N 342 THR CA CB sing N N 343 THR CA HA sing N N 344 THR C O doub N N 345 THR C OXT sing N N 346 THR CB OG1 sing N N 347 THR CB CG2 sing N N 348 THR CB HB sing N N 349 THR OG1 HG1 sing N N 350 THR CG2 HG21 sing N N 351 THR CG2 HG22 sing N N 352 THR CG2 HG23 sing N N 353 THR OXT HXT sing N N 354 TYR N CA sing N N 355 TYR N H sing N N 356 TYR N H2 sing N N 357 TYR CA C sing N N 358 TYR CA CB sing N N 359 TYR CA HA sing N N 360 TYR C O doub N N 361 TYR C OXT sing N N 362 TYR CB CG sing N N 363 TYR CB HB2 sing N N 364 TYR CB HB3 sing N N 365 TYR CG CD1 doub Y N 366 TYR CG CD2 sing Y N 367 TYR CD1 CE1 sing Y N 368 TYR CD1 HD1 sing N N 369 TYR CD2 CE2 doub Y N 370 TYR CD2 HD2 sing N N 371 TYR CE1 CZ doub Y N 372 TYR CE1 HE1 sing N N 373 TYR CE2 CZ sing Y N 374 TYR CE2 HE2 sing N N 375 TYR CZ OH sing N N 376 TYR OH HH sing N N 377 TYR OXT HXT sing N N 378 VAL N CA sing N N 379 VAL N H sing N N 380 VAL N H2 sing N N 381 VAL CA C sing N N 382 VAL CA CB sing N N 383 VAL CA HA sing N N 384 VAL C O doub N N 385 VAL C OXT sing N N 386 VAL CB CG1 sing N N 387 VAL CB CG2 sing N N 388 VAL CB HB sing N N 389 VAL CG1 HG11 sing N N 390 VAL CG1 HG12 sing N N 391 VAL CG1 HG13 sing N N 392 VAL CG2 HG21 sing N N 393 VAL CG2 HG22 sing N N 394 VAL CG2 HG23 sing N N 395 VAL OXT HXT sing N N 396 # _pdbx_deposit_group.group_id G_1002130 _pdbx_deposit_group.group_description ;BROMODOMAIN OF THE HUMAN ATAD2 screened against the DSPL fragment Library by X-ray Crystallography at the XChem facility of Diamond Light Source beamline I04-1 ; _pdbx_deposit_group.group_title 'XChem fragment screen' _pdbx_deposit_group.group_type 'changed state' # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id JMM _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id JMM _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 5R4V _atom_sites.fract_transf_matrix[1][1] 0.012470 _atom_sites.fract_transf_matrix[1][2] 0.007200 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014400 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007138 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_