HEADER IMMUNE SYSTEM 28-FEB-20 5R5W TITLE PANDDA ANALYSIS GROUP DEPOSITION -- CRYSTAL STRUCTURE OF FIBRINOGEN- TITLE 2 LIKE GLOBE DOMAIN OF HUMAN TENASCIN-C IN COMPLEX WITH Z2856434942 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TENASCIN C (HEXABRACHION), ISOFORM CRA_A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNC, HCG_29852; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SGC - DIAMOND I04-1 FRAGMENT SCREENING, PANDDA, XCHEMEXPLORER, KEYWDS 2 FIBRINOGEN-RELATED PROTEIN (FREP), PRO-INFLAMMATORY, DAMAGE- KEYWDS 3 ASSOCIATED MOLECULAR PATTERN (DAMP), IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.A.COKER,G.A.BEZERRA,F.VON DELFT,C.H.ARROWSMITH,C.BOUNTRA, AUTHOR 2 A.M.EDWARDS,W.W.YUE,B.D.MARSDEN REVDAT 1 28-OCT-20 5R5W 0 JRNL AUTH J.A.COKER,G.A.BEZERRA,F.VON DELFT,C.H.ARROWSMITH,C.BOUNTRA, JRNL AUTH 2 A.M.EDWARDS,W.W.YUE,B.D.MARSDEN JRNL TITL PANDDA ANALYSIS GROUP DEPOSITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1349 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2015 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1677 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 0.92000 REMARK 3 B33 (A**2) : -1.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.106 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1787 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1501 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2416 ; 1.754 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3472 ; 1.581 ; 1.599 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 218 ; 7.161 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;30.285 ;22.315 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 266 ;13.321 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.747 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 208 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2133 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 444 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 866 ; 2.118 ; 2.321 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 865 ; 2.110 ; 2.319 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1087 ; 3.291 ; 3.486 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5R5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1001402809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29281 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 71.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 2.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 6QNV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS 0.09M NPS, 0.1M BUFFER SYSTEM REMARK 280 3 PH = 8.5, 50% V/V PRECIPITANT MIX 1, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.82500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.64500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.91250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.64500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.73750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.64500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.64500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.91250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.64500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.64500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.73750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.82500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 2128 REMARK 465 THR A 2129 REMARK 465 ASP A 2130 REMARK 465 SER A 2131 REMARK 465 ALA A 2132 REMARK 465 ILE A 2133 REMARK 465 THR A 2134 REMARK 465 GLU A 2195 REMARK 465 GLY A 2196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A2033 CD NE CZ NH1 NH2 REMARK 470 LYS A2041 CG CD CE NZ REMARK 470 ARG A2077 NE CZ NH1 NH2 REMARK 470 LYS A2096 CG CD CE NZ REMARK 470 ARG A2098 CZ NH1 NH2 REMARK 470 LYS A2102 CE NZ REMARK 470 LYS A2141 CG CD CE NZ REMARK 470 GLN A2165 CD OE1 NE2 REMARK 470 ARG A2192 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2640 O HOH A 2663 1.50 REMARK 500 O HOH A 2622 O HOH A 2656 1.54 REMARK 500 O HOH A 2650 O HOH A 2663 1.81 REMARK 500 OE1 GLU A 2011 O HOH A 2501 1.81 REMARK 500 O HOH A 2525 O HOH A 2633 1.91 REMARK 500 O HOH A 2634 O HOH A 2661 2.01 REMARK 500 OE2 GLU A 2034 O HOH A 2502 2.05 REMARK 500 O HOH A 2627 O HOH A 2660 2.06 REMARK 500 O09 EJQ A 2401 O HOH A 2503 2.09 REMARK 500 O THR A 2065 O HOH A 2504 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A2011 CD GLU A2011 OE2 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 0 O - C - N ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1990 14.95 -64.47 REMARK 500 ASP A2019 58.10 37.57 REMARK 500 LYS A2030 -16.21 -157.63 REMARK 500 ASN A2031 -9.07 -153.55 REMARK 500 GLU A2052 -124.92 -134.30 REMARK 500 ARG A2147 -94.72 -117.62 REMARK 500 ASN A2148 60.71 -154.90 REMARK 500 CYS A2149 -50.09 -120.23 REMARK 500 ASN A2153 50.85 -141.69 REMARK 500 ASN A2193 36.25 -146.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EJQ A 2401 DBREF1 5R5W A 1979 2196 UNP A0A024R884_HUMAN DBREF2 5R5W A A0A024R884 1979 2196 SEQADV 5R5W SER A -1 UNP A0A024R88 EXPRESSION TAG SEQADV 5R5W MET A 0 UNP A0A024R88 EXPRESSION TAG SEQRES 1 A 220 SER MET PRO PHE PRO LYS ASP CYS SER GLN ALA MET LEU SEQRES 2 A 220 ASN GLY ASP THR THR SER GLY LEU TYR THR ILE TYR LEU SEQRES 3 A 220 ASN GLY ASP LYS ALA GLN ALA LEU GLU VAL PHE CYS ASP SEQRES 4 A 220 MET THR SER ASP GLY GLY GLY TRP ILE VAL PHE LEU ARG SEQRES 5 A 220 ARG LYS ASN GLY ARG GLU ASN PHE TYR GLN ASN TRP LYS SEQRES 6 A 220 ALA TYR ALA ALA GLY PHE GLY ASP ARG ARG GLU GLU PHE SEQRES 7 A 220 TRP LEU GLY LEU ASP ASN LEU ASN LYS ILE THR ALA GLN SEQRES 8 A 220 GLY GLN TYR GLU LEU ARG VAL ASP LEU ARG ASP HIS GLY SEQRES 9 A 220 GLU THR ALA PHE ALA VAL TYR ASP LYS PHE SER VAL GLY SEQRES 10 A 220 ASP ALA LYS THR ARG TYR LYS LEU LYS VAL GLU GLY TYR SEQRES 11 A 220 SER GLY THR ALA GLY ASP SER MET ALA TYR HIS ASN GLY SEQRES 12 A 220 ARG SER PHE SER THR PHE ASP LYS ASP THR ASP SER ALA SEQRES 13 A 220 ILE THR ASN CYS ALA LEU SER TYR LYS GLY ALA PHE TRP SEQRES 14 A 220 TYR ARG ASN CYS HIS ARG VAL ASN LEU MET GLY ARG TYR SEQRES 15 A 220 GLY ASP ASN ASN HIS SER GLN GLY VAL ASN TRP PHE HIS SEQRES 16 A 220 TRP LYS GLY HIS GLU HIS SER ILE GLN PHE ALA GLU MET SEQRES 17 A 220 LYS LEU ARG PRO SER ASN PHE ARG ASN LEU GLU GLY HET EJQ A2401 16 HETNAM EJQ ~{N}-(4-FLUOROPHENYL)-2-PYRROLIDIN-1-YL-ETHANAMIDE FORMUL 2 EJQ C12 H15 F N2 O FORMUL 3 HOH *173(H2 O) HELIX 1 AA1 ASP A 1983 LEU A 1989 1 7 HELIX 2 AA2 ASN A 2003 ASP A 2005 5 3 HELIX 3 AA3 THR A 2017 GLY A 2021 5 5 HELIX 4 AA4 ASN A 2039 GLY A 2046 1 8 HELIX 5 AA5 GLY A 2057 ALA A 2066 1 10 HELIX 6 AA6 ASP A 2094 ARG A 2098 5 5 HELIX 7 AA7 MET A 2114 ASN A 2118 5 5 HELIX 8 AA8 CYS A 2136 LYS A 2141 1 6 HELIX 9 AA9 PHE A 2170 GLY A 2174 1 5 HELIX 10 AB1 ASN A 2190 LEU A 2194 5 5 SHEET 1 AA1 5 GLY A1996 TYR A2001 0 SHEET 2 AA1 5 ALA A2009 ASP A2015 -1 O CYS A2014 N GLY A1996 SHEET 3 AA1 5 TRP A2023 ARG A2029 -1 O VAL A2025 N PHE A2013 SHEET 4 AA1 5 PHE A2054 TRP A2055 -1 O PHE A2054 N ARG A2028 SHEET 5 AA1 5 PHE A2047 GLY A2048 -1 N PHE A2047 O TRP A2055 SHEET 1 AA2 7 GLY A1996 TYR A2001 0 SHEET 2 AA2 7 ALA A2009 ASP A2015 -1 O CYS A2014 N GLY A1996 SHEET 3 AA2 7 TRP A2023 ARG A2029 -1 O VAL A2025 N PHE A2013 SHEET 4 AA2 7 PHE A2181 PRO A2188 -1 O MET A2184 N PHE A2026 SHEET 5 AA2 7 TYR A2070 ASP A2078 -1 N GLU A2071 O ARG A2187 SHEET 6 AA2 7 GLU A2081 VAL A2092 -1 O ALA A2085 N VAL A2074 SHEET 7 AA2 7 LEU A2101 GLY A2108 -1 O SER A2107 N VAL A2086 SHEET 1 AA3 2 VAL A2152 ASN A2153 0 SHEET 2 AA3 2 ASN A2168 TRP A2169 -1 O ASN A2168 N ASN A2153 SSBOND 1 CYS A 1984 CYS A 2014 1555 1555 2.02 SSBOND 2 CYS A 2136 CYS A 2149 1555 1555 2.08 CISPEP 1 ASN A 2148 CYS A 2149 0 4.88 SITE 1 AC1 12 ALA A2007 ALA A2009 ALA A2045 GLY A2046 SITE 2 AC1 12 PHE A2047 GLY A2048 ARG A2050 PHE A2054 SITE 3 AC1 12 TRP A2055 LEU A2056 HOH A2503 HOH A2610 CRYST1 77.290 77.290 71.650 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012938 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012938 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013957 0.00000