HEADER TRANSCRIPTION 29-FEB-20 5R68 TITLE XCHEM GROUP DEPOSITION -- CRYSTAL STRUCTURE OF HUMAN YEATS4 IN COMPLEX TITLE 2 WITH FM000199E COMPND MOL_ID: 1; COMPND 2 MOLECULE: YEATS DOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: GLIOMA-AMPLIFIED SEQUENCE 41,GAS41,NUMA-BINDING PROTEIN 1, COMPND 5 NUBI1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YEATS4, GAS41; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SGC - DIAMOND I04-1 FRAGMENT SCREENING, PANDDA, XCHEMEXPLORER, KEYWDS 2 HISTONE READER, YEATS DOMAIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR B.RAUX,T.KROJER,F.VON DELFT,C.H.ARROWSMITH,C.BOUNTRA,A.EDWARDS, AUTHOR 2 K.V.M.HUBER REVDAT 2 06-MAR-24 5R68 1 REMARK REVDAT 1 30-DEC-20 5R68 0 JRNL AUTH B.RAUX,T.KROJER,F.VON DELFT,C.H.ARROWSMITH,C.BOUNTRA, JRNL AUTH 2 A.EDWARDS,K.V.M.HUBER JRNL TITL XCHEM GROUP DEPOSITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 44226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2329 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3229 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2165 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.89000 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.92000 REMARK 3 B13 (A**2) : 0.80000 REMARK 3 B23 (A**2) : 0.34000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.096 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2289 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2131 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3095 ; 1.680 ; 1.679 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4936 ; 1.347 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 7.527 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;35.640 ;22.522 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 391 ;14.255 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;18.826 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2581 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 493 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1052 ; 2.356 ; 2.378 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1053 ; 2.355 ; 2.378 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1309 ; 3.335 ; 3.550 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5R68 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1001402821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46555 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 41.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5VNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 7.5, 0.15M LITHIUM REMARK 280 SULFATE, 40% PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 17 REMARK 465 SER B 123 REMARK 465 ASP B 124 REMARK 465 THR B 125 REMARK 465 ASN B 126 REMARK 465 ALA B 127 REMARK 465 MET B 128 REMARK 465 LEU B 129 REMARK 465 GLY B 130 REMARK 465 THR B 157 REMARK 465 SER B 158 REMARK 465 ARG B 159 REMARK 465 GLN B 160 REMARK 465 LEU B 161 REMARK 465 THR B 162 REMARK 465 LEU B 163 REMARK 465 GLY B 164 REMARK 465 ALA B 165 REMARK 465 TYR B 166 REMARK 465 LYS B 167 REMARK 465 HIS B 168 REMARK 465 GLU B 169 REMARK 465 THR B 170 REMARK 465 GLU B 171 REMARK 465 PHE B 172 REMARK 465 ALA B 173 REMARK 465 GLU B 174 REMARK 465 LEU B 175 REMARK 465 GLU B 176 REMARK 465 VAL B 177 REMARK 465 LYS B 178 REMARK 465 THR B 179 REMARK 465 ARG B 180 REMARK 465 GLU B 181 REMARK 465 LYS B 182 REMARK 465 LEU B 183 REMARK 465 GLU B 184 REMARK 465 ALA B 185 REMARK 465 ALA B 186 REMARK 465 LYS B 187 REMARK 465 LYS B 188 REMARK 465 LYS B 189 REMARK 465 THR B 190 REMARK 465 ALA B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 HIS B 195 REMARK 465 HIS B 196 REMARK 465 HIS B 197 REMARK 465 MET A 17 REMARK 465 GLN A 122 REMARK 465 SER A 123 REMARK 465 ASP A 124 REMARK 465 THR A 125 REMARK 465 ASN A 126 REMARK 465 ALA A 127 REMARK 465 MET A 128 REMARK 465 LEU A 129 REMARK 465 GLY A 130 REMARK 465 THR A 157 REMARK 465 SER A 158 REMARK 465 ARG A 159 REMARK 465 GLN A 160 REMARK 465 LEU A 161 REMARK 465 THR A 162 REMARK 465 LEU A 163 REMARK 465 GLY A 164 REMARK 465 ALA A 165 REMARK 465 TYR A 166 REMARK 465 LYS A 167 REMARK 465 HIS A 168 REMARK 465 GLU A 169 REMARK 465 THR A 170 REMARK 465 GLU A 171 REMARK 465 PHE A 172 REMARK 465 ALA A 173 REMARK 465 GLU A 174 REMARK 465 LEU A 175 REMARK 465 GLU A 176 REMARK 465 VAL A 177 REMARK 465 LYS A 178 REMARK 465 THR A 179 REMARK 465 ARG A 180 REMARK 465 GLU A 181 REMARK 465 LYS A 182 REMARK 465 LEU A 183 REMARK 465 GLU A 184 REMARK 465 ALA A 185 REMARK 465 ALA A 186 REMARK 465 LYS A 187 REMARK 465 LYS A 188 REMARK 465 LYS A 189 REMARK 465 THR A 190 REMARK 465 ALA A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 GLN B 153 CG CD OE1 NE2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 69 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 41 -8.25 -141.54 REMARK 500 GLU A 72 -9.07 -59.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RYD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RYD A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 DBREF 5R68 B 18 190 UNP O95619 YETS4_HUMAN 18 190 DBREF 5R68 A 18 190 UNP O95619 YETS4_HUMAN 18 190 SEQADV 5R68 MET B 17 UNP O95619 INITIATING METHIONINE SEQADV 5R68 ALA B 191 UNP O95619 EXPRESSION TAG SEQADV 5R68 HIS B 192 UNP O95619 EXPRESSION TAG SEQADV 5R68 HIS B 193 UNP O95619 EXPRESSION TAG SEQADV 5R68 HIS B 194 UNP O95619 EXPRESSION TAG SEQADV 5R68 HIS B 195 UNP O95619 EXPRESSION TAG SEQADV 5R68 HIS B 196 UNP O95619 EXPRESSION TAG SEQADV 5R68 HIS B 197 UNP O95619 EXPRESSION TAG SEQADV 5R68 MET A 17 UNP O95619 INITIATING METHIONINE SEQADV 5R68 ALA A 191 UNP O95619 EXPRESSION TAG SEQADV 5R68 HIS A 192 UNP O95619 EXPRESSION TAG SEQADV 5R68 HIS A 193 UNP O95619 EXPRESSION TAG SEQADV 5R68 HIS A 194 UNP O95619 EXPRESSION TAG SEQADV 5R68 HIS A 195 UNP O95619 EXPRESSION TAG SEQADV 5R68 HIS A 196 UNP O95619 EXPRESSION TAG SEQADV 5R68 HIS A 197 UNP O95619 EXPRESSION TAG SEQRES 1 B 181 MET GLY VAL THR ILE VAL LYS PRO ILE VAL TYR GLY ASN SEQRES 2 B 181 VAL ALA ARG TYR PHE GLY LYS LYS ARG GLU GLU ASP GLY SEQRES 3 B 181 HIS THR HIS GLN TRP THR VAL TYR VAL LYS PRO TYR ARG SEQRES 4 B 181 ASN GLU ASP MET SER ALA TYR VAL LYS LYS ILE GLN PHE SEQRES 5 B 181 LYS LEU HIS GLU SER TYR GLY ASN PRO LEU ARG VAL VAL SEQRES 6 B 181 THR LYS PRO PRO TYR GLU ILE THR GLU THR GLY TRP GLY SEQRES 7 B 181 GLU PHE GLU ILE ILE ILE LYS ILE PHE PHE ILE ASP PRO SEQRES 8 B 181 ASN GLU ARG PRO VAL THR LEU TYR HIS LEU LEU LYS LEU SEQRES 9 B 181 PHE GLN SER ASP THR ASN ALA MET LEU GLY LYS LYS THR SEQRES 10 B 181 VAL VAL SER GLU PHE TYR ASP GLU MET ILE PHE GLN ASP SEQRES 11 B 181 PRO THR ALA MET MET GLN GLN LEU LEU THR THR SER ARG SEQRES 12 B 181 GLN LEU THR LEU GLY ALA TYR LYS HIS GLU THR GLU PHE SEQRES 13 B 181 ALA GLU LEU GLU VAL LYS THR ARG GLU LYS LEU GLU ALA SEQRES 14 B 181 ALA LYS LYS LYS THR ALA HIS HIS HIS HIS HIS HIS SEQRES 1 A 181 MET GLY VAL THR ILE VAL LYS PRO ILE VAL TYR GLY ASN SEQRES 2 A 181 VAL ALA ARG TYR PHE GLY LYS LYS ARG GLU GLU ASP GLY SEQRES 3 A 181 HIS THR HIS GLN TRP THR VAL TYR VAL LYS PRO TYR ARG SEQRES 4 A 181 ASN GLU ASP MET SER ALA TYR VAL LYS LYS ILE GLN PHE SEQRES 5 A 181 LYS LEU HIS GLU SER TYR GLY ASN PRO LEU ARG VAL VAL SEQRES 6 A 181 THR LYS PRO PRO TYR GLU ILE THR GLU THR GLY TRP GLY SEQRES 7 A 181 GLU PHE GLU ILE ILE ILE LYS ILE PHE PHE ILE ASP PRO SEQRES 8 A 181 ASN GLU ARG PRO VAL THR LEU TYR HIS LEU LEU LYS LEU SEQRES 9 A 181 PHE GLN SER ASP THR ASN ALA MET LEU GLY LYS LYS THR SEQRES 10 A 181 VAL VAL SER GLU PHE TYR ASP GLU MET ILE PHE GLN ASP SEQRES 11 A 181 PRO THR ALA MET MET GLN GLN LEU LEU THR THR SER ARG SEQRES 12 A 181 GLN LEU THR LEU GLY ALA TYR LYS HIS GLU THR GLU PHE SEQRES 13 A 181 ALA GLU LEU GLU VAL LYS THR ARG GLU LYS LEU GLU ALA SEQRES 14 A 181 ALA LYS LYS LYS THR ALA HIS HIS HIS HIS HIS HIS HET EDO B 201 4 HET RYD B 202 12 HET EDO B 203 4 HET EDO A 601 4 HET EDO A 602 4 HET RYD A 603 12 HET EDO A 604 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM RYD (1-METHYLBENZOTRIAZOL-5-YL)METHANOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 4 RYD 2(C8 H9 N3 O) FORMUL 10 HOH *121(H2 O) HELIX 1 AA1 ASP B 58 ALA B 61 5 4 HELIX 2 AA2 THR B 148 THR B 156 1 9 HELIX 3 AA3 ASP A 58 ALA A 61 5 4 HELIX 4 AA4 THR A 148 THR A 156 1 9 SHEET 1 AA1 4 TYR B 86 GLY B 92 0 SHEET 2 AA1 4 HIS B 45 PRO B 53 -1 N TRP B 47 O GLU B 90 SHEET 3 AA1 4 THR B 20 TYR B 33 -1 N VAL B 26 O LYS B 52 SHEET 4 AA1 4 VAL B 134 GLN B 145 -1 O PHE B 144 N ILE B 21 SHEET 1 AA2 4 LEU B 78 VAL B 81 0 SHEET 2 AA2 4 VAL B 63 LYS B 69 -1 N PHE B 68 O ARG B 79 SHEET 3 AA2 4 GLU B 97 PHE B 104 -1 O ILE B 99 N LYS B 69 SHEET 4 AA2 4 VAL B 112 LEU B 117 -1 O LEU B 114 N ILE B 100 SHEET 1 AA3 4 TYR A 86 GLY A 92 0 SHEET 2 AA3 4 HIS A 45 PRO A 53 -1 N TRP A 47 O GLU A 90 SHEET 3 AA3 4 THR A 20 TYR A 33 -1 N VAL A 26 O LYS A 52 SHEET 4 AA3 4 THR A 133 GLN A 145 -1 O PHE A 144 N ILE A 21 SHEET 1 AA4 4 LEU A 78 VAL A 81 0 SHEET 2 AA4 4 VAL A 63 LYS A 69 -1 N PHE A 68 O ARG A 79 SHEET 3 AA4 4 GLU A 97 PHE A 104 -1 O ILE A 99 N LYS A 69 SHEET 4 AA4 4 VAL A 112 LEU A 117 -1 O VAL A 112 N ILE A 102 CISPEP 1 PRO B 84 PRO B 85 0 3.84 CISPEP 2 PRO A 84 PRO A 85 0 -2.88 SITE 1 AC1 1 GLU B 97 SITE 1 AC2 7 ILE A 105 HIS B 43 SER B 73 TYR B 74 SITE 2 AC2 7 GLY B 92 TRP B 93 GLY B 94 SITE 1 AC3 7 GLU B 109 ARG B 110 ILE B 143 PHE B 144 SITE 2 AC3 7 HOH B 301 HOH B 319 HOH B 326 SITE 1 AC4 5 TYR A 54 GLU A 137 HOH A 702 ARG B 32 SITE 2 AC4 5 THR B 133 SITE 1 AC5 5 VAL A 30 ARG A 32 GLN A 46 TRP A 47 SITE 2 AC5 5 THR A 48 SITE 1 AC6 7 HIS A 43 SER A 73 TYR A 74 GLY A 92 SITE 2 AC6 7 TRP A 93 GLY A 94 ILE B 105 SITE 1 AC7 6 GLU A 109 ARG A 110 VAL A 112 ILE A 143 SITE 2 AC7 6 PHE A 144 HOH A 727 CRYST1 44.880 46.810 58.340 67.39 68.46 69.57 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022282 -0.008300 -0.006648 0.00000 SCALE2 0.000000 0.022797 -0.007013 0.00000 SCALE3 0.000000 0.000000 0.019280 0.00000