HEADER SIGNALING PROTEIN 03-MAR-20 5R87 TITLE PANDDA ANALYSIS GROUP DEPOSITION INTERLEUKIN-1 BETA -- FRAGMENT TITLE 2 Z44592329 IN COMPLEX WITH INTERLEUKIN-1 BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 BETA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IL-1 BETA,CATABOLIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL1B, IL1F2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IL-1 BETA, SIGNALING PROTEIN, SGC - DIAMOND I04-1 FRAGMENT SCREENING, KEYWDS 2 PANDDA, XCHEMEXPLORER EXPDTA X-RAY DIFFRACTION AUTHOR G.F.DE NICOLA,C.E.NICHOLS REVDAT 4 06-MAR-24 5R87 1 REMARK REVDAT 3 05-AUG-20 5R87 1 JRNL REVDAT 2 22-JUL-20 5R87 1 JRNL REVDAT 1 22-APR-20 5R87 0 JRNL AUTH C.NICHOLS,J.NG,A.KESHU,G.KELLY,M.R.CONTE,M.S.MARBER, JRNL AUTH 2 F.FRATERNALI,G.F.DE NICOLA JRNL TITL MINING THE PDB FOR TRACTABLE CASES WHERE X-RAY JRNL TITL 2 CRYSTALLOGRAPHY COMBINED WITH FRAGMENT SCREENS CAN BE USED JRNL TITL 3 TO SYSTEMATICALLY DESIGN PROTEIN-PROTEIN INHIBITORS: TWO JRNL TITL 4 TEST CASES ILLUSTRATED BY IL1 BETA-IL1R AND P38 ALPHA-TAB1 JRNL TITL 5 COMPLEXES. JRNL REF J.MED.CHEM. V. 63 7559 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32543856 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00403 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1877 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2629 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1194 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.851 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2985 ; 0.011 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 1904 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2875 ; 1.788 ; 1.665 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4480 ; 1.368 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 8.419 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;34.445 ;24.767 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;14.715 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 9.082 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 271 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2679 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 435 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1580 ; 2.339 ; 3.092 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1565 ; 2.350 ; 3.075 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1407 ; 4.196 ; 4.470 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5R87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1001402892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.96871 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37383 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 44.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.61100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2NVH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8M AMMONIUM SULPHATE, 0.1M TRIS REMARK 280 PH7.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.52500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.28750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.76250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 1 CB REMARK 470 GLN A 34 CG CD OE1 NE2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 LYS A 55 CD CE NZ REMARK 470 LYS A 93 CE NZ REMARK 470 GLN A 141 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 326 O HOH A 331 4665 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 15 34.37 70.19 REMARK 500 ASP A 75 48.41 39.93 REMARK 500 LYS A 138 38.97 -96.34 REMARK 500 GLN A 141 -68.56 130.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K0G A 203 DBREF 5R87 A 1 153 UNP P01584 IL1B_HUMAN 117 269 SEQRES 1 A 153 ALA PRO VAL ARG SER LEU ASN CYS THR LEU ARG ASP SER SEQRES 2 A 153 GLN GLN LYS SER LEU VAL MET SER GLY PRO TYR GLU LEU SEQRES 3 A 153 LYS ALA LEU HIS LEU GLN GLY GLN ASP MET GLU GLN GLN SEQRES 4 A 153 VAL VAL PHE SER MET SER PHE VAL GLN GLY GLU GLU SER SEQRES 5 A 153 ASN ASP LYS ILE PRO VAL ALA LEU GLY LEU LYS GLU LYS SEQRES 6 A 153 ASN LEU TYR LEU SER CYS VAL LEU LYS ASP ASP LYS PRO SEQRES 7 A 153 THR LEU GLN LEU GLU SER VAL ASP PRO LYS ASN TYR PRO SEQRES 8 A 153 LYS LYS LYS MET GLU LYS ARG PHE VAL PHE ASN LYS ILE SEQRES 9 A 153 GLU ILE ASN ASN LYS LEU GLU PHE GLU SER ALA GLN PHE SEQRES 10 A 153 PRO ASN TRP TYR ILE SER THR SER GLN ALA GLU ASN MET SEQRES 11 A 153 PRO VAL PHE LEU GLY GLY THR LYS GLY GLY GLN ASP ILE SEQRES 12 A 153 THR ASP PHE THR MET GLN PHE VAL SER SER HET SO4 A 201 5 HET SO4 A 202 5 HET K0G A 203 16 HETNAM SO4 SULFATE ION HETNAM K0G N-PHENYL-N'-PYRIDIN-3-YLUREA FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 K0G C12 H11 N3 O FORMUL 5 HOH *118(H2 O) HELIX 1 AA1 GLN A 32 GLN A 39 5 8 HELIX 2 AA2 GLU A 96 PHE A 99 5 4 SHEET 1 AA1 7 ARG A 4 ASP A 12 0 SHEET 2 AA1 7 PHE A 42 PHE A 46 -1 O PHE A 42 N CYS A 8 SHEET 3 AA1 7 LYS A 55 LEU A 62 -1 O GLY A 61 N SER A 43 SHEET 4 AA1 7 PHE A 101 ILE A 106 -1 O PHE A 101 N VAL A 58 SHEET 5 AA1 7 LYS A 109 SER A 114 -1 O GLU A 113 N ASN A 102 SHEET 6 AA1 7 PHE A 146 PHE A 150 -1 O PHE A 146 N LEU A 110 SHEET 7 AA1 7 ARG A 4 ASP A 12 -1 N ARG A 11 O THR A 147 SHEET 1 AA2 3 SER A 17 MET A 20 0 SHEET 2 AA2 3 LEU A 26 LEU A 29 -1 O LEU A 29 N SER A 17 SHEET 3 AA2 3 MET A 130 PRO A 131 -1 O MET A 130 N ALA A 28 SHEET 1 AA3 2 LEU A 67 LYS A 74 0 SHEET 2 AA3 2 LYS A 77 SER A 84 -1 O LYS A 77 N LYS A 74 SHEET 1 AA4 2 TYR A 121 SER A 123 0 SHEET 2 AA4 2 PHE A 133 GLY A 135 -1 O PHE A 133 N SER A 123 CISPEP 1 TYR A 90 PRO A 91 0 -6.09 SITE 1 AC1 5 ALA A 1 VAL A 3 LYS A 92 LYS A 93 SITE 2 AC1 5 HOH A 315 SITE 1 AC2 4 ARG A 98 HOH A 303 HOH A 325 HOH A 343 SITE 1 AC3 9 PHE A 46 GLU A 105 ASN A 108 LEU A 110 SITE 2 AC3 9 PRO A 118 TRP A 120 THR A 147 MET A 148 SITE 3 AC3 9 PHE A 150 CRYST1 54.650 54.650 75.050 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018298 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018298 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013324 0.00000 TER 1245 SER A 152 HETATM 1246 S SO4 A 201 29.547 14.018 50.259 1.00103.31 S HETATM 1247 O1 SO4 A 201 29.208 13.120 49.181 1.00114.01 O HETATM 1248 O2 SO4 A 201 29.150 15.371 49.912 1.00 92.63 O HETATM 1249 O3 SO4 A 201 28.855 13.592 51.445 1.00 51.27 O HETATM 1250 O4 SO4 A 201 30.974 13.977 50.481 1.00 99.20 O HETATM 1251 S SO4 A 202 23.939 3.669 60.644 1.00 50.72 S HETATM 1252 O1 SO4 A 202 25.319 3.904 60.233 1.00 48.28 O HETATM 1253 O2 SO4 A 202 23.086 3.840 59.499 1.00 52.21 O HETATM 1254 O3 SO4 A 202 23.825 2.339 61.183 1.00 55.48 O HETATM 1255 O4 SO4 A 202 23.511 4.618 61.655 1.00 44.83 O HETATM 1256 N1 K0G A 203 41.941 26.274 67.364 0.37 42.87 N HETATM 1257 C4 K0G A 203 39.541 24.772 61.621 0.37 48.30 C HETATM 1258 C5 K0G A 203 39.259 26.071 62.040 0.37 50.16 C HETATM 1259 C6 K0G A 203 39.641 26.519 63.300 0.37 50.02 C HETATM 1260 C7 K0G A 203 43.059 26.234 68.215 0.37 42.17 C HETATM 1261 C8 K0G A 203 43.316 27.252 69.113 0.37 40.94 C HETATM 1262 C10 K0G A 203 45.190 25.991 69.876 0.37 40.93 C HETATM 1263 N K0G A 203 40.643 25.992 65.464 0.37 46.22 N HETATM 1264 C K0G A 203 41.932 25.892 66.016 0.37 43.45 C HETATM 1265 O K0G A 203 42.933 25.554 65.392 0.37 41.00 O HETATM 1266 C1 K0G A 203 40.314 25.640 64.145 0.37 49.73 C HETATM 1267 C11 K0G A 203 43.912 25.106 68.198 0.37 41.09 C HETATM 1268 C2 K0G A 203 40.617 24.332 63.735 0.37 50.47 C HETATM 1269 C3 K0G A 203 40.222 23.912 62.464 0.37 48.00 C HETATM 1270 C9 K0G A 203 44.407 27.124 69.944 0.37 42.44 C HETATM 1271 N2 K0G A 203 44.964 24.978 69.020 0.37 40.97 N HETATM 1272 O HOH A 301 28.431 -0.545 53.211 1.00 51.52 O HETATM 1273 O HOH A 302 48.495 21.270 74.118 1.00 26.35 O HETATM 1274 O HOH A 303 21.625 6.068 61.486 1.00 49.33 O HETATM 1275 O HOH A 304 35.978 13.077 83.415 1.00 39.58 O HETATM 1276 O HOH A 305 37.774 22.093 79.119 1.00 45.34 O HETATM 1277 O HOH A 306 40.937 9.840 84.697 1.00 45.62 O HETATM 1278 O HOH A 307 52.510 21.217 59.257 1.00 37.06 O HETATM 1279 O HOH A 308 23.656 4.330 82.850 1.00 35.08 O HETATM 1280 O HOH A 309 48.837 14.618 82.338 1.00 29.86 O HETATM 1281 O HOH A 310 36.656 1.217 70.623 1.00 30.22 O HETATM 1282 O HOH A 311 39.850 30.695 72.232 1.00 50.86 O HETATM 1283 O HOH A 312 35.834 14.551 81.409 1.00 34.69 O HETATM 1284 O HOH A 313 26.751 21.848 75.726 1.00 41.55 O HETATM 1285 O HOH A 314 50.482 5.528 84.133 1.00 40.82 O HETATM 1286 O HOH A 315 26.669 13.333 52.868 1.00 34.17 O HETATM 1287 O HOH A 316 50.126 5.064 67.297 1.00 37.27 O HETATM 1288 O HOH A 317 32.750 7.161 79.094 1.00 39.63 O HETATM 1289 O HOH A 318 29.536 21.609 79.540 1.00 41.40 O HETATM 1290 O HOH A 319 37.149 12.673 58.737 1.00 26.16 O HETATM 1291 O HOH A 320 38.182 10.597 57.249 1.00 27.99 O HETATM 1292 O HOH A 321 29.851 1.864 61.022 1.00 43.37 O HETATM 1293 O HOH A 322 38.235 19.130 82.688 1.00 39.45 O HETATM 1294 O HOH A 323 32.896 20.115 54.542 1.00 37.38 O HETATM 1295 O HOH A 324 27.693 22.768 72.305 1.00 39.91 O HETATM 1296 O HOH A 325 26.184 4.217 57.743 1.00 44.31 O HETATM 1297 O HOH A 326 56.920 8.588 75.618 1.00 41.83 O HETATM 1298 O HOH A 327 52.446 10.142 63.220 1.00 33.84 O HETATM 1299 O HOH A 328 26.354 20.243 66.017 1.00 29.27 O HETATM 1300 O HOH A 329 46.941 8.952 79.588 1.00 24.45 O HETATM 1301 O HOH A 330 34.176 11.129 64.244 1.00 18.36 O HETATM 1302 O HOH A 331 46.578 3.962 55.890 1.00 49.37 O HETATM 1303 O HOH A 332 28.821 8.385 51.117 1.00 38.44 O HETATM 1304 O HOH A 333 37.575 15.182 52.494 1.00 42.74 O HETATM 1305 O HOH A 334 53.620 14.943 73.651 1.00 25.57 O HETATM 1306 O HOH A 335 25.244 7.025 69.663 1.00 29.58 O HETATM 1307 O HOH A 336 53.444 21.658 56.724 1.00 48.43 O HETATM 1308 O HOH A 337 49.179 13.624 69.330 1.00 21.42 O HETATM 1309 O HOH A 338 39.496 8.510 58.291 1.00 28.47 O HETATM 1310 O HOH A 339 26.891 15.408 59.968 1.00 36.49 O HETATM 1311 O HOH A 340 41.803 7.091 80.919 1.00 31.04 O HETATM 1312 O HOH A 341 25.177 16.668 62.908 1.00 36.03 O HETATM 1313 O HOH A 342 49.525 23.495 68.722 1.00 45.89 O HETATM 1314 O HOH A 343 22.951 6.341 58.288 1.00 45.02 O HETATM 1315 O HOH A 344 41.849 -1.770 70.804 1.00 40.87 O HETATM 1316 O HOH A 345 37.148 17.857 74.857 1.00 20.33 O HETATM 1317 O HOH A 346 28.503 12.340 69.112 1.00 24.17 O HETATM 1318 O HOH A 347 46.908 13.278 67.592 1.00 20.55 O HETATM 1319 O HOH A 348 38.310 4.703 76.578 1.00 35.66 O HETATM 1320 O HOH A 349 35.717 4.376 76.039 1.00 40.06 O HETATM 1321 O HOH A 350 42.189 15.207 55.652 1.00 33.30 O HETATM 1322 O HOH A 351 34.221 30.031 63.104 1.00 50.64 O HETATM 1323 O HOH A 352 64.449 11.414 69.852 1.00 50.88 O HETATM 1324 O HOH A 353 42.215 9.911 55.373 1.00 43.66 O HETATM 1325 O HOH A 354 51.860 17.246 64.484 1.00 33.31 O HETATM 1326 O HOH A 355 28.773 0.698 68.117 1.00 46.87 O HETATM 1327 O HOH A 356 24.237 22.121 78.038 1.00 36.10 O HETATM 1328 O HOH A 357 26.925 5.557 54.450 1.00 42.89 O HETATM 1329 O HOH A 358 31.349 21.856 60.056 1.00 26.81 O HETATM 1330 O HOH A 359 53.520 20.586 83.303 1.00 31.93 O HETATM 1331 O HOH A 360 39.435 11.864 55.255 1.00 34.61 O HETATM 1332 O HOH A 361 53.660 16.965 66.392 1.00 41.52 O HETATM 1333 O HOH A 362 33.679 -0.053 67.619 1.00 55.48 O HETATM 1334 O HOH A 363 31.669 -1.099 62.536 1.00 45.95 O HETATM 1335 O HOH A 364 38.180 5.395 50.498 1.00 34.74 O HETATM 1336 O HOH A 365 21.022 0.834 83.294 1.00 48.77 O HETATM 1337 O HOH A 366 27.694 22.616 59.789 1.00 50.26 O HETATM 1338 O HOH A 367 54.240 19.552 66.790 1.00 55.00 O HETATM 1339 O HOH A 368 44.276 9.493 79.065 1.00 24.42 O HETATM 1340 O HOH A 369 51.529 8.325 84.990 1.00 38.96 O HETATM 1341 O HOH A 370 46.009 20.650 57.849 1.00 38.07 O HETATM 1342 O HOH A 371 25.225 22.023 58.682 1.00 56.20 O HETATM 1343 O HOH A 372 24.249 0.128 76.534 1.00 43.41 O HETATM 1344 O HOH A 373 24.604 14.061 62.579 1.00 33.44 O HETATM 1345 O HOH A 374 36.991 31.916 75.311 1.00 56.51 O HETATM 1346 O HOH A 375 48.263 8.165 62.135 1.00 36.80 O HETATM 1347 O HOH A 376 22.567 19.689 64.764 1.00 44.09 O HETATM 1348 O HOH A 377 37.840 8.215 51.345 1.00 40.08 O HETATM 1349 O HOH A 378 34.631 6.443 77.039 1.00 25.13 O HETATM 1350 O HOH A 379 50.649 7.124 63.362 1.00 52.04 O HETATM 1351 O HOH A 380 45.417 18.300 55.229 1.00 37.14 O HETATM 1352 O HOH A 381 33.677 9.124 82.055 1.00 40.34 O HETATM 1353 O HOH A 382 24.180 4.843 71.560 1.00 34.41 O HETATM 1354 O HOH A 383 29.581 2.021 56.933 1.00 29.20 O HETATM 1355 O HOH A 384 28.155 2.884 54.731 1.00 34.70 O HETATM 1356 O HOH A 385 42.946 12.224 85.779 1.00 36.66 O HETATM 1357 O HOH A 386 38.124 3.974 71.898 1.00 39.28 O HETATM 1358 O HOH A 387 40.965 20.435 80.952 1.00 32.92 O HETATM 1359 O HOH A 388 28.734 3.394 59.255 1.00 35.06 O HETATM 1360 O HOH A 389 63.329 14.462 73.258 1.00 44.03 O HETATM 1361 O HOH A 390 25.124 19.974 68.503 1.00 32.54 O HETATM 1362 O HOH A 391 39.890 5.635 72.817 1.00 27.18 O HETATM 1363 O HOH A 392 27.797 2.130 66.422 1.00 46.96 O HETATM 1364 O HOH A 393 23.786 26.174 62.205 1.00 49.30 O HETATM 1365 O HOH A 394 24.536 7.669 65.075 1.00 26.82 O HETATM 1366 O HOH A 395 37.006 15.818 85.394 1.00 53.04 O HETATM 1367 O HOH A 396 45.082 9.746 86.381 1.00 38.83 O HETATM 1368 O HOH A 397 39.251 11.158 87.529 1.00 60.06 O HETATM 1369 O HOH A 398 26.701 23.660 68.245 1.00 58.10 O HETATM 1370 O HOH A 399 53.547 18.276 58.675 1.00 50.30 O HETATM 1371 O HOH A 400 29.611 7.174 48.578 1.00 57.84 O HETATM 1372 O HOH A 401 49.039 -0.523 69.027 1.00 48.34 O HETATM 1373 O HOH A 402 53.163 22.260 54.438 1.00 52.75 O HETATM 1374 O HOH A 403 32.505 23.890 56.635 1.00 46.50 O HETATM 1375 O HOH A 404 39.541 -1.263 72.781 1.00 50.82 O HETATM 1376 O HOH A 405 48.862 23.411 75.502 1.00 36.00 O HETATM 1377 O HOH A 406 53.004 15.236 62.531 1.00 47.88 O HETATM 1378 O HOH A 407 52.463 19.375 62.962 1.00 33.25 O HETATM 1379 O HOH A 408 64.260 15.094 70.910 1.00 49.14 O HETATM 1380 O HOH A 409 24.175 5.583 67.606 1.00 40.52 O HETATM 1381 O HOH A 410 24.832 22.471 69.361 1.00 50.78 O HETATM 1382 O HOH A 411 24.942 17.949 65.222 1.00 38.78 O HETATM 1383 O HOH A 412 48.905 5.818 64.082 1.00 49.31 O HETATM 1384 O HOH A 413 39.828 5.289 81.031 1.00 51.38 O HETATM 1385 O HOH A 414 50.652 12.760 58.191 1.00 47.45 O HETATM 1386 O HOH A 415 47.754 21.638 53.251 1.00 55.49 O HETATM 1387 O HOH A 416 34.994 1.778 76.990 1.00 44.01 O HETATM 1388 O HOH A 417 24.887 11.205 52.768 1.00 47.06 O HETATM 1389 O HOH A 418 38.194 4.303 79.275 1.00 38.58 O CONECT 1246 1247 1248 1249 1250 CONECT 1247 1246 CONECT 1248 1246 CONECT 1249 1246 CONECT 1250 1246 CONECT 1251 1252 1253 1254 1255 CONECT 1252 1251 CONECT 1253 1251 CONECT 1254 1251 CONECT 1255 1251 CONECT 1256 1260 1264 CONECT 1257 1258 1269 CONECT 1258 1257 1259 CONECT 1259 1258 1266 CONECT 1260 1256 1261 1267 CONECT 1261 1260 1270 CONECT 1262 1270 1271 CONECT 1263 1264 1266 CONECT 1264 1256 1263 1265 CONECT 1265 1264 CONECT 1266 1259 1263 1268 CONECT 1267 1260 1271 CONECT 1268 1266 1269 CONECT 1269 1257 1268 CONECT 1270 1261 1262 CONECT 1271 1262 1267 MASTER 309 0 3 2 14 0 6 6 1338 1 26 12 END