HEADER HYDROLASE 08-APR-20 5RGE TITLE CRYSTAL STRUCTURE OF KEMP ELIMINASE HG3.17 WITH BOUND TRANSITION STATE TITLE 2 ANALOG, 277K COMPND MOL_ID: 1; COMPND 2 MOLECULE: KEMP ELIMINASE HG3; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.8; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOASCUS AURANTIACUS; SOURCE 3 ORGANISM_TAXID: 5087; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BROOM,R.V.RAKOTOHARISOA,M.C.THOMPSON,J.S.FRASER,R.A.CHICA REVDAT 4 06-MAR-24 5RGE 1 REMARK REVDAT 3 12-MAY-21 5RGE 1 REMARK REVDAT 2 02-DEC-20 5RGE 1 JRNL REVDAT 1 22-JUL-20 5RGE 0 JRNL AUTH A.BROOM,R.V.RAKOTOHARISOA,M.C.THOMPSON,N.ZARIFI,E.NGUYEN, JRNL AUTH 2 N.MUKHAMETZHANOV,L.LIU,J.S.FRASER,R.A.CHICA JRNL TITL ENSEMBLE-BASED ENZYME DESIGN CAN RECAPITULATE THE EFFECTS OF JRNL TITL 2 LABORATORY DIRECTED EVOLUTION IN SILICO. JRNL REF NAT COMMUN V. 11 4808 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32968058 JRNL DOI 10.1038/S41467-020-18619-X REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 27504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4644 - 4.2643 1.00 1970 154 0.1258 0.1470 REMARK 3 2 4.2643 - 3.3853 1.00 1864 147 0.1083 0.1158 REMARK 3 3 3.3853 - 2.9576 1.00 1853 146 0.1320 0.1711 REMARK 3 4 2.9576 - 2.6873 1.00 1836 144 0.1405 0.1613 REMARK 3 5 2.6873 - 2.4947 1.00 1819 143 0.1423 0.1599 REMARK 3 6 2.4947 - 2.3476 1.00 1812 143 0.1477 0.1713 REMARK 3 7 2.3476 - 2.2301 1.00 1796 141 0.1452 0.1925 REMARK 3 8 2.2301 - 2.1330 0.99 1824 142 0.1623 0.2105 REMARK 3 9 2.1330 - 2.0509 0.99 1787 142 0.1756 0.2178 REMARK 3 10 2.0509 - 1.9801 0.99 1786 139 0.1925 0.2406 REMARK 3 11 1.9801 - 1.9182 0.99 1783 140 0.1958 0.2477 REMARK 3 12 1.9182 - 1.8634 0.99 1798 142 0.2198 0.2397 REMARK 3 13 1.8634 - 1.8143 0.98 1739 137 0.2376 0.2981 REMARK 3 14 1.8143 - 1.7701 0.99 1786 140 0.2840 0.3441 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1465 1.6636 4.1027 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.1982 REMARK 3 T33: 0.1554 T12: -0.0022 REMARK 3 T13: -0.0007 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.1268 L22: 0.2384 REMARK 3 L33: 0.1628 L12: 0.0789 REMARK 3 L13: -0.0083 L23: 0.1469 REMARK 3 S TENSOR REMARK 3 S11: -0.0129 S12: 0.1263 S13: -0.1378 REMARK 3 S21: -0.1028 S22: 0.0899 S23: 0.0510 REMARK 3 S31: 0.0413 S32: -0.0193 S33: 0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3470 6.5208 9.7841 REMARK 3 T TENSOR REMARK 3 T11: 0.1594 T22: 0.1682 REMARK 3 T33: 0.1634 T12: 0.0067 REMARK 3 T13: -0.0085 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.1288 L22: 0.2588 REMARK 3 L33: 0.2536 L12: 0.1483 REMARK 3 L13: -0.1129 L23: -0.0130 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: 0.0625 S13: 0.0783 REMARK 3 S21: 0.0045 S22: -0.0064 S23: 0.0060 REMARK 3 S31: -0.0528 S32: -0.0336 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3983 2.2107 21.8181 REMARK 3 T TENSOR REMARK 3 T11: 0.1365 T22: 0.1399 REMARK 3 T33: 0.1341 T12: -0.0037 REMARK 3 T13: -0.0015 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.5124 L22: 0.2880 REMARK 3 L33: 0.1573 L12: -0.1394 REMARK 3 L13: 0.0040 L23: -0.1860 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.0304 S13: 0.0240 REMARK 3 S21: 0.0324 S22: 0.0045 S23: -0.0178 REMARK 3 S31: -0.0027 S32: -0.0377 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7045 0.8954 33.2965 REMARK 3 T TENSOR REMARK 3 T11: 0.2150 T22: 0.2105 REMARK 3 T33: 0.1690 T12: -0.0140 REMARK 3 T13: -0.0191 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0113 L22: 0.0143 REMARK 3 L33: 0.0549 L12: 0.0123 REMARK 3 L13: -0.0148 L23: -0.0107 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: -0.1442 S13: -0.0656 REMARK 3 S21: 0.1570 S22: 0.0197 S23: -0.1401 REMARK 3 S31: 0.0557 S32: 0.0714 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 197 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5728 3.3021 19.8565 REMARK 3 T TENSOR REMARK 3 T11: 0.1535 T22: 0.1433 REMARK 3 T33: 0.1658 T12: 0.0012 REMARK 3 T13: -0.0098 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.2116 L22: 0.1060 REMARK 3 L33: 0.1936 L12: 0.1359 REMARK 3 L13: 0.0014 L23: -0.0594 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: -0.0075 S13: -0.0037 REMARK 3 S21: 0.0191 S22: 0.0071 S23: -0.0683 REMARK 3 S31: 0.0034 S32: 0.0305 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 271 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9719 10.1182 6.2211 REMARK 3 T TENSOR REMARK 3 T11: 0.1604 T22: 0.1748 REMARK 3 T33: 0.1666 T12: 0.0038 REMARK 3 T13: 0.0020 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.1106 L22: 0.1318 REMARK 3 L33: 0.0963 L12: 0.1100 REMARK 3 L13: 0.0797 L23: 0.1090 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: 0.1134 S13: 0.0644 REMARK 3 S21: 0.0203 S22: -0.0264 S23: -0.0413 REMARK 3 S31: -0.0330 S32: 0.0803 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5RGE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-20. REMARK 100 THE DEPOSITION ID IS D_1001403185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 4.5-5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1158 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27504 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 38.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8-2.4 M AMMONIUM SULFATE, 4MG/ML REMARK 280 PROTEIN CONCENTRATION, 100MM SODIUM ACETATE, PH 5.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.64000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.24000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.24000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.64000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLY A 304 REMARK 465 SER A 305 REMARK 465 ILE A 306 REMARK 465 GLU A 307 REMARK 465 GLY A 308 REMARK 465 ARG A 309 REMARK 465 GLY A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 46 O HOH A 601 2.16 REMARK 500 O HOH A 792 O HOH A 808 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 695 O HOH A 795 1455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 269 -64.53 -94.22 REMARK 500 VAL A 269 -64.53 -105.92 REMARK 500 THR A 280 63.97 36.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6NT A 500 DBREF 5RGE A 2 303 UNP P23360 XYNA_THEAU 28 329 SEQADV 5RGE MET A -1 UNP P23360 INITIATING METHIONINE SEQADV 5RGE ALA A 0 UNP P23360 EXPRESSION TAG SEQADV 5RGE GLU A 1 UNP P23360 EXPRESSION TAG SEQADV 5RGE ILE A 6 UNP P23360 VAL 32 ENGINEERED MUTATION SEQADV 5RGE LYS A 37 UNP P23360 GLN 63 ENGINEERED MUTATION SEQADV 5RGE MET A 42 UNP P23360 GLN 68 ENGINEERED MUTATION SEQADV 5RGE TRP A 44 UNP P23360 THR 70 ENGINEERED MUTATION SEQADV 5RGE GLU A 47 UNP P23360 ASN 73 ENGINEERED MUTATION SEQADV 5RGE GLN A 50 UNP P23360 LYS 76 ENGINEERED MUTATION SEQADV 5RGE GLY A 81 UNP P23360 ARG 107 ENGINEERED MUTATION SEQADV 5RGE ALA A 82 UNP P23360 GLY 108 ENGINEERED MUTATION SEQADV 5RGE GLY A 83 UNP P23360 HIS 109 ENGINEERED MUTATION SEQADV 5RGE CYS A 84 UNP P23360 THR 110 ENGINEERED MUTATION SEQADV 5RGE ASN A 89 UNP P23360 SER 115 ENGINEERED MUTATION SEQADV 5RGE PHE A 90 UNP P23360 GLN 116 ENGINEERED MUTATION SEQADV 5RGE ILE A 105 UNP P23360 THR 131 ENGINEERED MUTATION SEQADV 5RGE THR A 125 UNP P23360 ALA 151 ENGINEERED MUTATION SEQADV 5RGE GLY A 130 UNP P23360 ASN 156 ENGINEERED MUTATION SEQADV 5RGE ASN A 142 UNP P23360 THR 168 ENGINEERED MUTATION SEQADV 5RGE MET A 172 UNP P23360 ASN 198 ENGINEERED MUTATION SEQADV 5RGE MET A 208 UNP P23360 THR 234 ENGINEERED MUTATION SEQADV 5RGE SER A 234 UNP P23360 ALA 260 ENGINEERED MUTATION SEQADV 5RGE LEU A 236 UNP P23360 THR 262 ENGINEERED MUTATION SEQADV 5RGE MET A 237 UNP P23360 GLU 263 ENGINEERED MUTATION SEQADV 5RGE MET A 267 UNP P23360 TRP 293 ENGINEERED MUTATION SEQADV 5RGE ALA A 275 UNP P23360 TRP 301 ENGINEERED MUTATION SEQADV 5RGE PHE A 276 UNP P23360 ARG 302 ENGINEERED MUTATION SEQADV 5RGE SER A 279 UNP P23360 THR 305 ENGINEERED MUTATION SEQADV 5RGE ASN A 300 UNP P23360 ASP 326 ENGINEERED MUTATION SEQADV 5RGE GLY A 304 UNP P23360 EXPRESSION TAG SEQADV 5RGE SER A 305 UNP P23360 EXPRESSION TAG SEQADV 5RGE ILE A 306 UNP P23360 EXPRESSION TAG SEQADV 5RGE GLU A 307 UNP P23360 EXPRESSION TAG SEQADV 5RGE GLY A 308 UNP P23360 EXPRESSION TAG SEQADV 5RGE ARG A 309 UNP P23360 EXPRESSION TAG SEQADV 5RGE GLY A 310 UNP P23360 EXPRESSION TAG SEQADV 5RGE HIS A 311 UNP P23360 EXPRESSION TAG SEQADV 5RGE HIS A 312 UNP P23360 EXPRESSION TAG SEQADV 5RGE HIS A 313 UNP P23360 EXPRESSION TAG SEQADV 5RGE HIS A 314 UNP P23360 EXPRESSION TAG SEQADV 5RGE HIS A 315 UNP P23360 EXPRESSION TAG SEQADV 5RGE HIS A 316 UNP P23360 EXPRESSION TAG SEQRES 1 A 318 MET ALA GLU ALA ALA GLN SER ILE ASP GLN LEU ILE LYS SEQRES 2 A 318 ALA ARG GLY LYS VAL TYR PHE GLY VAL ALA THR ASP GLN SEQRES 3 A 318 ASN ARG LEU THR THR GLY LYS ASN ALA ALA ILE ILE LYS SEQRES 4 A 318 ALA ASP PHE GLY MET VAL TRP PRO GLU GLU SER MET GLN SEQRES 5 A 318 TRP ASP ALA THR GLU PRO SER GLN GLY ASN PHE ASN PHE SEQRES 6 A 318 ALA GLY ALA ASP TYR LEU VAL ASN TRP ALA GLN GLN ASN SEQRES 7 A 318 GLY LYS LEU ILE GLY ALA GLY CYS LEU VAL TRP HIS ASN SEQRES 8 A 318 PHE LEU PRO SER TRP VAL SER SER ILE THR ASP LYS ASN SEQRES 9 A 318 THR LEU ILE ASN VAL MET LYS ASN HIS ILE THR THR LEU SEQRES 10 A 318 MET THR ARG TYR LYS GLY LYS ILE ARG THR TRP ASP VAL SEQRES 11 A 318 VAL GLY GLU ALA PHE ASN GLU ASP GLY SER LEU ARG GLN SEQRES 12 A 318 ASN VAL PHE LEU ASN VAL ILE GLY GLU ASP TYR ILE PRO SEQRES 13 A 318 ILE ALA PHE GLN THR ALA ARG ALA ALA ASP PRO ASN ALA SEQRES 14 A 318 LYS LEU TYR ILE MET ASP TYR ASN LEU ASP SER ALA SER SEQRES 15 A 318 TYR PRO LYS THR GLN ALA ILE VAL ASN ARG VAL LYS GLN SEQRES 16 A 318 TRP ARG ALA ALA GLY VAL PRO ILE ASP GLY ILE GLY SER SEQRES 17 A 318 GLN MET HIS LEU SER ALA GLY GLN GLY ALA GLY VAL LEU SEQRES 18 A 318 GLN ALA LEU PRO LEU LEU ALA SER ALA GLY THR PRO GLU SEQRES 19 A 318 VAL SER ILE LEU MET LEU ASP VAL ALA GLY ALA SER PRO SEQRES 20 A 318 THR ASP TYR VAL ASN VAL VAL ASN ALA CYS LEU ASN VAL SEQRES 21 A 318 GLN SER CYS VAL GLY ILE THR VAL MET GLY VAL ALA ASP SEQRES 22 A 318 PRO ASP SER ALA PHE ALA SER SER THR PRO LEU LEU PHE SEQRES 23 A 318 ASP GLY ASN PHE ASN PRO LYS PRO ALA TYR ASN ALA ILE SEQRES 24 A 318 VAL GLN ASN LEU GLN GLN GLY SER ILE GLU GLY ARG GLY SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS HET 6NT A 500 16 HETNAM 6NT 6-NITROBENZOTRIAZOLE FORMUL 2 6NT C6 H4 N4 O2 FORMUL 3 HOH *228(H2 O) HELIX 1 AA1 SER A 5 ARG A 13 1 9 HELIX 2 AA2 ASP A 23 THR A 28 1 6 HELIX 3 AA3 LYS A 31 PHE A 40 1 10 HELIX 4 AA4 GLN A 50 GLU A 55 1 6 HELIX 5 AA5 PHE A 63 ASN A 76 1 14 HELIX 6 AA6 PRO A 92 SER A 97 1 6 HELIX 7 AA7 ASP A 100 TYR A 119 1 20 HELIX 8 AA8 ASN A 142 ILE A 148 1 7 HELIX 9 AA9 ASP A 151 ASP A 164 1 14 HELIX 10 AB1 TYR A 181 ALA A 197 1 17 HELIX 11 AB2 GLN A 214 SER A 227 1 14 HELIX 12 AB3 SER A 244 VAL A 258 1 15 HELIX 13 AB4 ALA A 270 SER A 274 5 5 HELIX 14 AB5 PHE A 276 THR A 280 5 5 HELIX 15 AB6 LYS A 291 GLN A 303 1 13 SHEET 1 AA1 9 TYR A 17 THR A 22 0 SHEET 2 AA1 9 MET A 42 PRO A 45 1 O TRP A 44 N THR A 22 SHEET 3 AA1 9 LEU A 79 VAL A 86 1 O GLY A 81 N VAL A 43 SHEET 4 AA1 9 THR A 125 GLY A 130 1 O ASP A 127 N ALA A 82 SHEET 5 AA1 9 LYS A 168 TYR A 174 1 O LYS A 168 N TRP A 126 SHEET 6 AA1 9 GLY A 203 LEU A 210 1 O GLN A 207 N ASP A 173 SHEET 7 AA1 9 GLU A 232 VAL A 240 1 O LEU A 236 N SER A 206 SHEET 8 AA1 9 CYS A 261 VAL A 266 1 O THR A 265 N LEU A 238 SHEET 9 AA1 9 TYR A 17 THR A 22 1 N GLY A 19 O ILE A 264 CISPEP 1 GLY A 83 CYS A 84 0 -2.84 SITE 1 AC1 10 ALA A 21 TRP A 44 GLN A 50 GLY A 83 SITE 2 AC1 10 CYS A 84 ASP A 127 LEU A 236 MET A 237 SITE 3 AC1 10 THR A 265 MET A 267 CRYST1 51.280 58.130 92.480 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019501 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017203 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010813 0.00000