HEADER VIRAL PROTEIN 25-MAY-20 5RHP TITLE PANDDA ANALYSIS GROUP DEPOSITION -- CRYSTAL STRUCTURE OF ZIKA VIRUS TITLE 2 NS3 HELICASE IN COMPLEX WITH Z2856434938 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3 HELICASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 3,FLAVIVIRIN PROTEASE NS3 CATALYTIC COMPND 5 SUBUNIT,SERINE PROTEASE NS3; COMPND 6 EC: 3.4.21.91,3.6.1.15,3.6.4.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SGC - DIAMOND I04-1 FRAGMENT SCREENING, PANDDA, XCHEMEXPLORER, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.S.GODOY,N.C.M.R.MESQUITA,G.OLIVA REVDAT 2 06-MAR-24 5RHP 1 REMARK REVDAT 1 10-JUN-20 5RHP 0 JRNL AUTH A.S.GODOY,N.C.M.R.MESQUITA,G.OLIVA JRNL TITL PANDDA ANALYSIS GROUP DEPOSITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2549 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3756 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3425 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 421 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.71000 REMARK 3 B22 (A**2) : -1.20000 REMARK 3 B33 (A**2) : 0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.60000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.564 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3843 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3465 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5084 ; 1.668 ; 1.668 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8011 ; 1.435 ; 1.590 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 470 ; 6.408 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;29.802 ;20.472 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 635 ;13.508 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;14.963 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 488 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4403 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 846 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1878 ; 2.178 ; 2.564 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1879 ; 2.178 ; 2.565 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2316 ; 3.162 ; 3.826 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5RHP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1001403231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NONE REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53682 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 44.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.86100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 6MH3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.72000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 882 O HOH A 1157 1.31 REMARK 500 O HOH A 1125 O HOH A 1140 1.51 REMARK 500 O HOH A 1132 O HOH A 1193 1.58 REMARK 500 O HOH A 1083 O HOH A 1137 1.79 REMARK 500 O HOH A 1136 O HOH A 1178 1.82 REMARK 500 O HOH A 1176 O HOH A 1185 1.96 REMARK 500 O HOH A 803 O HOH A 812 2.08 REMARK 500 O HOH A 1076 O HOH A 1154 2.08 REMARK 500 OD2 ASP A 501 O HOH A 801 2.11 REMARK 500 NH1 ARG A 226 O HOH A 802 2.12 REMARK 500 O HOH A 1203 O HOH A 1218 2.17 REMARK 500 O HOH A 836 O HOH A 1104 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1087 O HOH A 1148 2454 1.98 REMARK 500 O HOH A 1010 O HOH A 1150 2444 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 559 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 187 17.54 51.06 REMARK 500 MET A 244 56.93 -91.81 REMARK 500 MET A 414 59.86 -102.01 REMARK 500 ASP A 501 -116.14 36.08 REMARK 500 CYS A 600 31.04 -146.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1220 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A1221 DISTANCE = 6.56 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7ZC A 705 DBREF 5RHP A 183 617 UNP Q32ZE1 POLG_ZIKV 1681 2115 SEQRES 1 A 435 MET LEU LYS LYS LYS GLN LEU THR VAL LEU ASP LEU HIS SEQRES 2 A 435 PRO GLY ALA GLY LYS THR ARG ARG VAL LEU PRO GLU ILE SEQRES 3 A 435 VAL ARG GLU ALA ILE LYS LYS ARG LEU ARG THR VAL ILE SEQRES 4 A 435 LEU ALA PRO THR ARG VAL VAL ALA ALA GLU MET GLU GLU SEQRES 5 A 435 ALA LEU ARG GLY LEU PRO VAL ARG TYR MET THR THR ALA SEQRES 6 A 435 VAL ASN VAL THR HIS SER GLY THR GLU ILE VAL ASP LEU SEQRES 7 A 435 MET CYS HIS ALA THR PHE THR SER ARG LEU LEU GLN PRO SEQRES 8 A 435 ILE ARG VAL PRO ASN TYR ASN LEU ASN ILE MET ASP GLU SEQRES 9 A 435 ALA HIS PHE THR ASP PRO SER SER ILE ALA ALA ARG GLY SEQRES 10 A 435 TYR ILE SER THR ARG VAL GLU MET GLY GLU ALA ALA ALA SEQRES 11 A 435 ILE PHE MET THR ALA THR PRO PRO GLY THR ARG ASP ALA SEQRES 12 A 435 PHE PRO ASP SER ASN SER PRO ILE MET ASP THR GLU VAL SEQRES 13 A 435 GLU VAL PRO GLU ARG ALA TRP SER SER GLY PHE ASP TRP SEQRES 14 A 435 VAL THR ASP HIS SER GLY LYS THR VAL TRP PHE VAL PRO SEQRES 15 A 435 SER VAL ARG ASN GLY ASN GLU ILE ALA ALA CYS LEU THR SEQRES 16 A 435 LYS ALA GLY LYS ARG VAL ILE GLN LEU SER ARG LYS THR SEQRES 17 A 435 PHE GLU THR GLU PHE GLN LYS THR LYS ASN GLN GLU TRP SEQRES 18 A 435 ASP PHE VAL ILE THR THR ASP ILE SER GLU MET GLY ALA SEQRES 19 A 435 ASN PHE LYS ALA ASP ARG VAL ILE ASP SER ARG ARG CYS SEQRES 20 A 435 LEU LYS PRO VAL ILE LEU ASP GLY GLU ARG VAL ILE LEU SEQRES 21 A 435 ALA GLY PRO MET PRO VAL THR HIS ALA SER ALA ALA GLN SEQRES 22 A 435 ARG ARG GLY ARG ILE GLY ARG ASN PRO ASN LYS PRO GLY SEQRES 23 A 435 ASP GLU TYR MET TYR GLY GLY GLY CYS ALA GLU THR ASP SEQRES 24 A 435 GLU GLY HIS ALA HIS TRP LEU GLU ALA ARG MET LEU LEU SEQRES 25 A 435 ASP ASN ILE TYR LEU GLN ASP GLY LEU ILE ALA SER LEU SEQRES 26 A 435 TYR ARG PRO GLU ALA ASP LYS VAL ALA ALA ILE GLU GLY SEQRES 27 A 435 GLU PHE LYS LEU ARG THR GLU GLN ARG LYS THR PHE VAL SEQRES 28 A 435 GLU LEU MET LYS ARG GLY ASP LEU PRO VAL TRP LEU ALA SEQRES 29 A 435 TYR GLN VAL ALA SER ALA GLY ILE THR TYR THR ASP ARG SEQRES 30 A 435 ARG TRP CYS PHE ASP GLY THR THR ASN ASN THR ILE MET SEQRES 31 A 435 GLU ASP SER VAL PRO ALA GLU VAL TRP THR LYS TYR GLY SEQRES 32 A 435 GLU LYS ARG VAL LEU LYS PRO ARG TRP MET ASP ALA ARG SEQRES 33 A 435 VAL CYS SER ASP HIS ALA ALA LEU LYS SER PHE LYS GLU SEQRES 34 A 435 PHE ALA ALA GLY LYS ARG HET EDO A 701 4 HET PO4 A 702 5 HET PO4 A 703 5 HET MPD A 704 8 HET 7ZC A 705 15 HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM 7ZC 1-(5-METHOXY-1H-INDOL-3-YL)-N,N-DIMETHYL-METHANAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 MPD C6 H14 O2 FORMUL 6 7ZC C12 H16 N2 O FORMUL 7 HOH *421(H2 O) HELIX 1 AA1 ARG A 203 LYS A 215 1 13 HELIX 2 AA2 THR A 225 ARG A 237 1 13 HELIX 3 AA3 HIS A 263 GLN A 272 1 10 HELIX 4 AA4 ASP A 291 MET A 307 1 17 HELIX 5 AA5 PHE A 349 HIS A 355 1 7 HELIX 6 AA6 SER A 365 ALA A 379 1 15 HELIX 7 AA7 THR A 390 GLN A 396 1 7 HELIX 8 AA8 GLN A 396 GLN A 401 1 6 HELIX 9 AA9 ASP A 410 MET A 414 5 5 HELIX 10 AB1 THR A 449 GLY A 458 1 10 HELIX 11 AB2 HIS A 484 ASP A 495 1 12 HELIX 12 AB3 TYR A 508 VAL A 515 5 8 HELIX 13 AB4 ARG A 525 ARG A 538 1 14 HELIX 14 AB5 PRO A 542 ALA A 552 1 11 HELIX 15 AB6 ARG A 559 PHE A 563 5 5 HELIX 16 AB7 THR A 566 THR A 570 5 5 HELIX 17 AB8 ARG A 598 SER A 601 5 4 HELIX 18 AB9 ASP A 602 ALA A 614 1 13 SHEET 1 AA1 6 LEU A 189 LEU A 192 0 SHEET 2 AA1 6 ALA A 311 MET A 315 1 O ALA A 312 N THR A 190 SHEET 3 AA1 6 LEU A 281 MET A 284 1 N MET A 284 O MET A 315 SHEET 4 AA1 6 THR A 219 ALA A 223 1 N VAL A 220 O ILE A 283 SHEET 5 AA1 6 VAL A 258 CYS A 262 1 O ASP A 259 N THR A 219 SHEET 6 AA1 6 VAL A 241 TYR A 243 1 N ARG A 242 O VAL A 258 SHEET 1 AA2 6 ILE A 333 GLU A 337 0 SHEET 2 AA2 6 ASP A 469 TYR A 473 1 O TYR A 471 N MET A 334 SHEET 3 AA2 6 ARG A 422 ASP A 425 1 N ASP A 425 O MET A 472 SHEET 4 AA2 6 THR A 359 PHE A 362 1 N VAL A 360 O ARG A 422 SHEET 5 AA2 6 PHE A 405 THR A 408 1 O VAL A 406 N TRP A 361 SHEET 6 AA2 6 VAL A 383 LEU A 386 1 N ILE A 384 O ILE A 407 SHEET 1 AA3 3 ARG A 428 LEU A 435 0 SHEET 2 AA3 3 ARG A 439 PRO A 447 -1 O ALA A 443 N LYS A 431 SHEET 3 AA3 3 MET A 595 ASP A 596 1 O MET A 595 N VAL A 440 SHEET 1 AA4 2 MET A 572 GLU A 573 0 SHEET 2 AA4 2 VAL A 576 PRO A 577 -1 O VAL A 576 N GLU A 573 SHEET 1 AA5 2 GLU A 579 TRP A 581 0 SHEET 2 AA5 2 LYS A 587 VAL A 589 -1 O ARG A 588 N VAL A 580 CISPEP 1 GLY A 444 PRO A 445 0 1.88 SITE 1 AC1 2 ARG A 388 HOH A 836 SITE 1 AC2 10 GLY A 197 ALA A 198 GLY A 199 LYS A 200 SITE 2 AC2 10 THR A 201 ARG A 462 HOH A 840 HOH A 915 SITE 3 AC2 10 HOH A 945 HOH A 965 SITE 1 AC3 3 HOH A 833 HOH A 874 HOH A 932 SITE 1 AC4 4 ALA A 264 SER A 268 MET A 536 LYS A 537 SITE 1 AC5 4 THR A 567 MET A 572 PRO A 577 HOH A 814 CRYST1 53.280 69.440 56.990 90.00 92.33 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018769 0.000000 0.000764 0.00000 SCALE2 0.000000 0.014401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017561 0.00000