data_5RKC # _entry.id 5RKC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5RKC pdb_00005rkc 10.2210/pdb5rkc/pdb WWPDB D_1001403326 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-06-17 2 'Structure model' 1 1 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 5RKC _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2020-06-02 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Grosjean, H.' 1 ? 'Aimon, A.' 2 ? 'Krojer, T.' 3 ? 'Talon, R.' 4 ? 'Douangamath, A.' 5 ? 'Koekemoer, L.' 6 ? 'Arrowsmith, C.H.' 7 ? 'Edwards, A.' 8 ? 'Bountra, C.' 9 ? 'von Delft, F.' 10 ? 'Biggin, P.C.' 11 ? # _citation.id primary _citation.title 'PanDDA analysis group deposition of ground-state model' _citation.journal_abbrev 'To Be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Grosjean, H.' ? 1 primary 'Aimon, A.' ? 2 primary 'Krojer, T.' ? 3 primary 'Talon, R.' ? 4 primary 'Douangamath, A.' ? 5 primary 'Koekemoer, L.' ? 6 primary 'Arrowsmith, C.H.' ? 7 primary 'Edwards, A.' ? 8 primary 'Bountra, C.' ? 9 primary 'von Delft, F.' ? 10 primary 'Biggin, P.C.' ? 11 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PH-interacting protein' 17627.859 1 ? ? ? ? 2 non-polymer syn 'N-methyl-1-([1,2,4]triazolo[4,3-a]pyridin-3-yl)methanamine' 162.192 1 ? ? ? ? 3 water nat water 18.015 218 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PHIP,DDB1- and CUL4-associated factor 14,IRS-1 PH domain-binding protein,WD repeat-containing protein 11' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHSSGVDLGTENLYFQSMSYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLE AGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKRNTITKR ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGVDLGTENLYFQSMSYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLE AGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKRNTITKR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-methyl-1-([1,2,4]triazolo[4,3-a]pyridin-3-yl)methanamine' UWD 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 VAL n 1 12 ASP n 1 13 LEU n 1 14 GLY n 1 15 THR n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 PHE n 1 21 GLN n 1 22 SER n 1 23 MET n 1 24 SER n 1 25 TYR n 1 26 ASP n 1 27 ILE n 1 28 GLN n 1 29 ALA n 1 30 TRP n 1 31 LYS n 1 32 LYS n 1 33 GLN n 1 34 CYS n 1 35 GLU n 1 36 GLU n 1 37 LEU n 1 38 LEU n 1 39 ASN n 1 40 LEU n 1 41 ILE n 1 42 PHE n 1 43 GLN n 1 44 CYS n 1 45 GLU n 1 46 ASP n 1 47 SER n 1 48 GLU n 1 49 PRO n 1 50 PHE n 1 51 ARG n 1 52 GLN n 1 53 PRO n 1 54 VAL n 1 55 ASP n 1 56 LEU n 1 57 LEU n 1 58 GLU n 1 59 TYR n 1 60 PRO n 1 61 ASP n 1 62 TYR n 1 63 ARG n 1 64 ASP n 1 65 ILE n 1 66 ILE n 1 67 ASP n 1 68 THR n 1 69 PRO n 1 70 MET n 1 71 ASP n 1 72 PHE n 1 73 ALA n 1 74 THR n 1 75 VAL n 1 76 ARG n 1 77 GLU n 1 78 THR n 1 79 LEU n 1 80 GLU n 1 81 ALA n 1 82 GLY n 1 83 ASN n 1 84 TYR n 1 85 GLU n 1 86 SER n 1 87 PRO n 1 88 MET n 1 89 GLU n 1 90 LEU n 1 91 CYS n 1 92 LYS n 1 93 ASP n 1 94 VAL n 1 95 ARG n 1 96 LEU n 1 97 ILE n 1 98 PHE n 1 99 SER n 1 100 ASN n 1 101 SER n 1 102 LYS n 1 103 ALA n 1 104 TYR n 1 105 THR n 1 106 PRO n 1 107 SER n 1 108 LYS n 1 109 ARG n 1 110 SER n 1 111 ARG n 1 112 ILE n 1 113 TYR n 1 114 SER n 1 115 MET n 1 116 SER n 1 117 LEU n 1 118 ARG n 1 119 LEU n 1 120 SER n 1 121 ALA n 1 122 PHE n 1 123 PHE n 1 124 GLU n 1 125 GLU n 1 126 HIS n 1 127 ILE n 1 128 SER n 1 129 SER n 1 130 VAL n 1 131 LEU n 1 132 SER n 1 133 ASP n 1 134 TYR n 1 135 LYS n 1 136 SER n 1 137 ALA n 1 138 LEU n 1 139 ARG n 1 140 PHE n 1 141 HIS n 1 142 LYS n 1 143 ARG n 1 144 ASN n 1 145 THR n 1 146 ILE n 1 147 THR n 1 148 LYS n 1 149 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 149 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PHIP, DCAF14, WDR11' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UWD non-polymer . 'N-methyl-1-([1,2,4]triazolo[4,3-a]pyridin-3-yl)methanamine' ? 'C8 H10 N4' 162.192 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1292 ? ? ? A . n A 1 2 HIS 2 1293 ? ? ? A . n A 1 3 HIS 3 1294 ? ? ? A . n A 1 4 HIS 4 1295 ? ? ? A . n A 1 5 HIS 5 1296 ? ? ? A . n A 1 6 HIS 6 1297 ? ? ? A . n A 1 7 HIS 7 1298 ? ? ? A . n A 1 8 SER 8 1299 ? ? ? A . n A 1 9 SER 9 1300 ? ? ? A . n A 1 10 GLY 10 1301 ? ? ? A . n A 1 11 VAL 11 1302 ? ? ? A . n A 1 12 ASP 12 1303 ? ? ? A . n A 1 13 LEU 13 1304 ? ? ? A . n A 1 14 GLY 14 1305 ? ? ? A . n A 1 15 THR 15 1306 ? ? ? A . n A 1 16 GLU 16 1307 ? ? ? A . n A 1 17 ASN 17 1308 ? ? ? A . n A 1 18 LEU 18 1309 ? ? ? A . n A 1 19 TYR 19 1310 ? ? ? A . n A 1 20 PHE 20 1311 ? ? ? A . n A 1 21 GLN 21 1312 ? ? ? A . n A 1 22 SER 22 1313 ? ? ? A . n A 1 23 MET 23 1314 ? ? ? A . n A 1 24 SER 24 1315 ? ? ? A . n A 1 25 TYR 25 1316 1316 TYR TYR A . n A 1 26 ASP 26 1317 1317 ASP ASP A . n A 1 27 ILE 27 1318 1318 ILE ILE A . n A 1 28 GLN 28 1319 1319 GLN GLN A . n A 1 29 ALA 29 1320 1320 ALA ALA A . n A 1 30 TRP 30 1321 1321 TRP TRP A . n A 1 31 LYS 31 1322 1322 LYS LYS A . n A 1 32 LYS 32 1323 1323 LYS LYS A . n A 1 33 GLN 33 1324 1324 GLN GLN A . n A 1 34 CYS 34 1325 1325 CYS CYS A . n A 1 35 GLU 35 1326 1326 GLU GLU A . n A 1 36 GLU 36 1327 1327 GLU GLU A . n A 1 37 LEU 37 1328 1328 LEU LEU A . n A 1 38 LEU 38 1329 1329 LEU LEU A . n A 1 39 ASN 39 1330 1330 ASN ASN A . n A 1 40 LEU 40 1331 1331 LEU LEU A . n A 1 41 ILE 41 1332 1332 ILE ILE A . n A 1 42 PHE 42 1333 1333 PHE PHE A . n A 1 43 GLN 43 1334 1334 GLN GLN A . n A 1 44 CYS 44 1335 1335 CYS CYS A . n A 1 45 GLU 45 1336 1336 GLU GLU A . n A 1 46 ASP 46 1337 1337 ASP ASP A . n A 1 47 SER 47 1338 1338 SER SER A . n A 1 48 GLU 48 1339 1339 GLU GLU A . n A 1 49 PRO 49 1340 1340 PRO PRO A . n A 1 50 PHE 50 1341 1341 PHE PHE A . n A 1 51 ARG 51 1342 1342 ARG ARG A . n A 1 52 GLN 52 1343 1343 GLN GLN A . n A 1 53 PRO 53 1344 1344 PRO PRO A . n A 1 54 VAL 54 1345 1345 VAL VAL A . n A 1 55 ASP 55 1346 1346 ASP ASP A . n A 1 56 LEU 56 1347 1347 LEU LEU A . n A 1 57 LEU 57 1348 1348 LEU LEU A . n A 1 58 GLU 58 1349 1349 GLU GLU A . n A 1 59 TYR 59 1350 1350 TYR TYR A . n A 1 60 PRO 60 1351 1351 PRO PRO A . n A 1 61 ASP 61 1352 1352 ASP ASP A . n A 1 62 TYR 62 1353 1353 TYR TYR A . n A 1 63 ARG 63 1354 1354 ARG ARG A . n A 1 64 ASP 64 1355 1355 ASP ASP A . n A 1 65 ILE 65 1356 1356 ILE ILE A . n A 1 66 ILE 66 1357 1357 ILE ILE A . n A 1 67 ASP 67 1358 1358 ASP ASP A . n A 1 68 THR 68 1359 1359 THR THR A . n A 1 69 PRO 69 1360 1360 PRO PRO A . n A 1 70 MET 70 1361 1361 MET MET A . n A 1 71 ASP 71 1362 1362 ASP ASP A . n A 1 72 PHE 72 1363 1363 PHE PHE A . n A 1 73 ALA 73 1364 1364 ALA ALA A . n A 1 74 THR 74 1365 1365 THR THR A . n A 1 75 VAL 75 1366 1366 VAL VAL A . n A 1 76 ARG 76 1367 1367 ARG ARG A . n A 1 77 GLU 77 1368 1368 GLU GLU A . n A 1 78 THR 78 1369 1369 THR THR A . n A 1 79 LEU 79 1370 1370 LEU LEU A . n A 1 80 GLU 80 1371 1371 GLU GLU A . n A 1 81 ALA 81 1372 1372 ALA ALA A . n A 1 82 GLY 82 1373 1373 GLY GLY A . n A 1 83 ASN 83 1374 1374 ASN ASN A . n A 1 84 TYR 84 1375 1375 TYR TYR A . n A 1 85 GLU 85 1376 1376 GLU GLU A . n A 1 86 SER 86 1377 1377 SER SER A . n A 1 87 PRO 87 1378 1378 PRO PRO A . n A 1 88 MET 88 1379 1379 MET MET A . n A 1 89 GLU 89 1380 1380 GLU GLU A . n A 1 90 LEU 90 1381 1381 LEU LEU A . n A 1 91 CYS 91 1382 1382 CYS CYS A . n A 1 92 LYS 92 1383 1383 LYS LYS A . n A 1 93 ASP 93 1384 1384 ASP ASP A . n A 1 94 VAL 94 1385 1385 VAL VAL A . n A 1 95 ARG 95 1386 1386 ARG ARG A . n A 1 96 LEU 96 1387 1387 LEU LEU A . n A 1 97 ILE 97 1388 1388 ILE ILE A . n A 1 98 PHE 98 1389 1389 PHE PHE A . n A 1 99 SER 99 1390 1390 SER SER A . n A 1 100 ASN 100 1391 1391 ASN ASN A . n A 1 101 SER 101 1392 1392 SER SER A . n A 1 102 LYS 102 1393 1393 LYS LYS A . n A 1 103 ALA 103 1394 1394 ALA ALA A . n A 1 104 TYR 104 1395 1395 TYR TYR A . n A 1 105 THR 105 1396 1396 THR THR A . n A 1 106 PRO 106 1397 1397 PRO PRO A . n A 1 107 SER 107 1398 1398 SER SER A . n A 1 108 LYS 108 1399 1399 LYS LYS A . n A 1 109 ARG 109 1400 1400 ARG ARG A . n A 1 110 SER 110 1401 1401 SER SER A . n A 1 111 ARG 111 1402 1402 ARG ARG A . n A 1 112 ILE 112 1403 1403 ILE ILE A . n A 1 113 TYR 113 1404 1404 TYR TYR A . n A 1 114 SER 114 1405 1405 SER SER A . n A 1 115 MET 115 1406 1406 MET MET A . n A 1 116 SER 116 1407 1407 SER SER A . n A 1 117 LEU 117 1408 1408 LEU LEU A . n A 1 118 ARG 118 1409 1409 ARG ARG A . n A 1 119 LEU 119 1410 1410 LEU LEU A . n A 1 120 SER 120 1411 1411 SER SER A . n A 1 121 ALA 121 1412 1412 ALA ALA A . n A 1 122 PHE 122 1413 1413 PHE PHE A . n A 1 123 PHE 123 1414 1414 PHE PHE A . n A 1 124 GLU 124 1415 1415 GLU GLU A . n A 1 125 GLU 125 1416 1416 GLU GLU A . n A 1 126 HIS 126 1417 1417 HIS HIS A . n A 1 127 ILE 127 1418 1418 ILE ILE A . n A 1 128 SER 128 1419 1419 SER SER A . n A 1 129 SER 129 1420 1420 SER SER A . n A 1 130 VAL 130 1421 1421 VAL VAL A . n A 1 131 LEU 131 1422 1422 LEU LEU A . n A 1 132 SER 132 1423 1423 SER SER A . n A 1 133 ASP 133 1424 1424 ASP ASP A . n A 1 134 TYR 134 1425 1425 TYR TYR A . n A 1 135 LYS 135 1426 1426 LYS LYS A . n A 1 136 SER 136 1427 1427 SER SER A . n A 1 137 ALA 137 1428 1428 ALA ALA A . n A 1 138 LEU 138 1429 1429 LEU LEU A . n A 1 139 ARG 139 1430 1430 ARG ARG A . n A 1 140 PHE 140 1431 1431 PHE PHE A . n A 1 141 HIS 141 1432 1432 HIS HIS A . n A 1 142 LYS 142 1433 1433 LYS LYS A . n A 1 143 ARG 143 1434 1434 ARG ARG A . n A 1 144 ASN 144 1435 ? ? ? A . n A 1 145 THR 145 1436 ? ? ? A . n A 1 146 ILE 146 1437 ? ? ? A . n A 1 147 THR 147 1438 ? ? ? A . n A 1 148 LYS 148 1439 ? ? ? A . n A 1 149 ARG 149 1440 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UWD 1 1501 1501 UWD LIG A . C 3 HOH 1 1601 197 HOH HOH A . C 3 HOH 2 1602 85 HOH HOH A . C 3 HOH 3 1603 89 HOH HOH A . C 3 HOH 4 1604 7 HOH HOH A . C 3 HOH 5 1605 151 HOH HOH A . C 3 HOH 6 1606 98 HOH HOH A . C 3 HOH 7 1607 17 HOH HOH A . C 3 HOH 8 1608 121 HOH HOH A . C 3 HOH 9 1609 65 HOH HOH A . C 3 HOH 10 1610 187 HOH HOH A . C 3 HOH 11 1611 183 HOH HOH A . C 3 HOH 12 1612 145 HOH HOH A . C 3 HOH 13 1613 33 HOH HOH A . C 3 HOH 14 1614 50 HOH HOH A . C 3 HOH 15 1615 83 HOH HOH A . C 3 HOH 16 1616 10 HOH HOH A . C 3 HOH 17 1617 25 HOH HOH A . C 3 HOH 18 1618 135 HOH HOH A . C 3 HOH 19 1619 105 HOH HOH A . C 3 HOH 20 1620 124 HOH HOH A . C 3 HOH 21 1621 47 HOH HOH A . C 3 HOH 22 1622 9 HOH HOH A . C 3 HOH 23 1623 12 HOH HOH A . C 3 HOH 24 1624 141 HOH HOH A . C 3 HOH 25 1625 184 HOH HOH A . C 3 HOH 26 1626 31 HOH HOH A . C 3 HOH 27 1627 74 HOH HOH A . C 3 HOH 28 1628 154 HOH HOH A . C 3 HOH 29 1629 20 HOH HOH A . C 3 HOH 30 1630 171 HOH HOH A . C 3 HOH 31 1631 70 HOH HOH A . C 3 HOH 32 1632 208 HOH HOH A . C 3 HOH 33 1633 16 HOH HOH A . C 3 HOH 34 1634 66 HOH HOH A . C 3 HOH 35 1635 172 HOH HOH A . C 3 HOH 36 1636 174 HOH HOH A . C 3 HOH 37 1637 36 HOH HOH A . C 3 HOH 38 1638 62 HOH HOH A . C 3 HOH 39 1639 140 HOH HOH A . C 3 HOH 40 1640 4 HOH HOH A . C 3 HOH 41 1641 12 HOH HOH A . C 3 HOH 42 1642 27 HOH HOH A . C 3 HOH 43 1643 176 HOH HOH A . C 3 HOH 44 1644 1 HOH HOH A . C 3 HOH 45 1645 130 HOH HOH A . C 3 HOH 46 1646 94 HOH HOH A . C 3 HOH 47 1647 14 HOH HOH A . C 3 HOH 48 1648 146 HOH HOH A . C 3 HOH 49 1649 84 HOH HOH A . C 3 HOH 50 1650 52 HOH HOH A . C 3 HOH 51 1651 45 HOH HOH A . C 3 HOH 52 1652 131 HOH HOH A . C 3 HOH 53 1653 76 HOH HOH A . C 3 HOH 54 1654 139 HOH HOH A . C 3 HOH 55 1655 101 HOH HOH A . C 3 HOH 56 1656 11 HOH HOH A . C 3 HOH 57 1657 92 HOH HOH A . C 3 HOH 58 1658 48 HOH HOH A . C 3 HOH 59 1659 182 HOH HOH A . C 3 HOH 60 1660 10 HOH HOH A . C 3 HOH 61 1661 3 HOH HOH A . C 3 HOH 62 1662 159 HOH HOH A . C 3 HOH 63 1663 60 HOH HOH A . C 3 HOH 64 1664 54 HOH HOH A . C 3 HOH 65 1665 59 HOH HOH A . C 3 HOH 66 1666 21 HOH HOH A . C 3 HOH 67 1667 63 HOH HOH A . C 3 HOH 68 1668 22 HOH HOH A . C 3 HOH 69 1669 35 HOH HOH A . C 3 HOH 70 1670 207 HOH HOH A . C 3 HOH 71 1671 77 HOH HOH A . C 3 HOH 72 1672 128 HOH HOH A . C 3 HOH 73 1673 5 HOH HOH A . C 3 HOH 74 1674 55 HOH HOH A . C 3 HOH 75 1675 39 HOH HOH A . C 3 HOH 76 1676 108 HOH HOH A . C 3 HOH 77 1677 119 HOH HOH A . C 3 HOH 78 1678 28 HOH HOH A . C 3 HOH 79 1679 157 HOH HOH A . C 3 HOH 80 1680 6 HOH HOH A . C 3 HOH 81 1681 64 HOH HOH A . C 3 HOH 82 1682 19 HOH HOH A . C 3 HOH 83 1683 71 HOH HOH A . C 3 HOH 84 1684 122 HOH HOH A . C 3 HOH 85 1685 113 HOH HOH A . C 3 HOH 86 1686 194 HOH HOH A . C 3 HOH 87 1687 167 HOH HOH A . C 3 HOH 88 1688 138 HOH HOH A . C 3 HOH 89 1689 24 HOH HOH A . C 3 HOH 90 1690 44 HOH HOH A . C 3 HOH 91 1691 29 HOH HOH A . C 3 HOH 92 1692 40 HOH HOH A . C 3 HOH 93 1693 144 HOH HOH A . C 3 HOH 94 1694 91 HOH HOH A . C 3 HOH 95 1695 42 HOH HOH A . C 3 HOH 96 1696 75 HOH HOH A . C 3 HOH 97 1697 173 HOH HOH A . C 3 HOH 98 1698 127 HOH HOH A . C 3 HOH 99 1699 158 HOH HOH A . C 3 HOH 100 1700 15 HOH HOH A . C 3 HOH 101 1701 82 HOH HOH A . C 3 HOH 102 1702 134 HOH HOH A . C 3 HOH 103 1703 129 HOH HOH A . C 3 HOH 104 1704 67 HOH HOH A . C 3 HOH 105 1705 116 HOH HOH A . C 3 HOH 106 1706 120 HOH HOH A . C 3 HOH 107 1707 90 HOH HOH A . C 3 HOH 108 1708 37 HOH HOH A . C 3 HOH 109 1709 23 HOH HOH A . C 3 HOH 110 1710 69 HOH HOH A . C 3 HOH 111 1711 178 HOH HOH A . C 3 HOH 112 1712 80 HOH HOH A . C 3 HOH 113 1713 7 HOH HOH A . C 3 HOH 114 1714 32 HOH HOH A . C 3 HOH 115 1715 58 HOH HOH A . C 3 HOH 116 1716 43 HOH HOH A . C 3 HOH 117 1717 49 HOH HOH A . C 3 HOH 118 1718 26 HOH HOH A . C 3 HOH 119 1719 155 HOH HOH A . C 3 HOH 120 1720 88 HOH HOH A . C 3 HOH 121 1721 204 HOH HOH A . C 3 HOH 122 1722 3 HOH HOH A . C 3 HOH 123 1723 142 HOH HOH A . C 3 HOH 124 1724 125 HOH HOH A . C 3 HOH 125 1725 20 HOH HOH A . C 3 HOH 126 1726 53 HOH HOH A . C 3 HOH 127 1727 38 HOH HOH A . C 3 HOH 128 1728 18 HOH HOH A . C 3 HOH 129 1729 2 HOH HOH A . C 3 HOH 130 1730 152 HOH HOH A . C 3 HOH 131 1731 22 HOH HOH A . C 3 HOH 132 1732 72 HOH HOH A . C 3 HOH 133 1733 81 HOH HOH A . C 3 HOH 134 1734 96 HOH HOH A . C 3 HOH 135 1735 132 HOH HOH A . C 3 HOH 136 1736 34 HOH HOH A . C 3 HOH 137 1737 137 HOH HOH A . C 3 HOH 138 1738 57 HOH HOH A . C 3 HOH 139 1739 175 HOH HOH A . C 3 HOH 140 1740 165 HOH HOH A . C 3 HOH 141 1741 161 HOH HOH A . C 3 HOH 142 1742 95 HOH HOH A . C 3 HOH 143 1743 126 HOH HOH A . C 3 HOH 144 1744 180 HOH HOH A . C 3 HOH 145 1745 117 HOH HOH A . C 3 HOH 146 1746 181 HOH HOH A . C 3 HOH 147 1747 109 HOH HOH A . C 3 HOH 148 1748 133 HOH HOH A . C 3 HOH 149 1749 123 HOH HOH A . C 3 HOH 150 1750 1 HOH HOH A . C 3 HOH 151 1751 118 HOH HOH A . C 3 HOH 152 1752 5 HOH HOH A . C 3 HOH 153 1753 13 HOH HOH A . C 3 HOH 154 1754 205 HOH HOH A . C 3 HOH 155 1755 153 HOH HOH A . C 3 HOH 156 1756 166 HOH HOH A . C 3 HOH 157 1757 177 HOH HOH A . C 3 HOH 158 1758 6 HOH HOH A . C 3 HOH 159 1759 150 HOH HOH A . C 3 HOH 160 1760 149 HOH HOH A . C 3 HOH 161 1761 185 HOH HOH A . C 3 HOH 162 1762 11 HOH HOH A . C 3 HOH 163 1763 8 HOH HOH A . C 3 HOH 164 1764 164 HOH HOH A . C 3 HOH 165 1765 114 HOH HOH A . C 3 HOH 166 1766 115 HOH HOH A . C 3 HOH 167 1767 198 HOH HOH A . C 3 HOH 168 1768 199 HOH HOH A . C 3 HOH 169 1769 2 HOH HOH A . C 3 HOH 170 1770 112 HOH HOH A . C 3 HOH 171 1771 136 HOH HOH A . C 3 HOH 172 1772 209 HOH HOH A . C 3 HOH 173 1773 107 HOH HOH A . C 3 HOH 174 1774 16 HOH HOH A . C 3 HOH 175 1775 61 HOH HOH A . C 3 HOH 176 1776 186 HOH HOH A . C 3 HOH 177 1777 15 HOH HOH A . C 3 HOH 178 1778 19 HOH HOH A . C 3 HOH 179 1779 190 HOH HOH A . C 3 HOH 180 1780 51 HOH HOH A . C 3 HOH 181 1781 41 HOH HOH A . C 3 HOH 182 1782 23 HOH HOH A . C 3 HOH 183 1783 9 HOH HOH A . C 3 HOH 184 1784 188 HOH HOH A . C 3 HOH 185 1785 210 HOH HOH A . C 3 HOH 186 1786 30 HOH HOH A . C 3 HOH 187 1787 201 HOH HOH A . C 3 HOH 188 1788 13 HOH HOH A . C 3 HOH 189 1789 14 HOH HOH A . C 3 HOH 190 1790 193 HOH HOH A . C 3 HOH 191 1791 168 HOH HOH A . C 3 HOH 192 1792 195 HOH HOH A . C 3 HOH 193 1793 170 HOH HOH A . C 3 HOH 194 1794 68 HOH HOH A . C 3 HOH 195 1795 46 HOH HOH A . C 3 HOH 196 1796 110 HOH HOH A . C 3 HOH 197 1797 17 HOH HOH A . C 3 HOH 198 1798 104 HOH HOH A . C 3 HOH 199 1799 99 HOH HOH A . C 3 HOH 200 1800 102 HOH HOH A . C 3 HOH 201 1801 18 HOH HOH A . C 3 HOH 202 1802 103 HOH HOH A . C 3 HOH 203 1803 73 HOH HOH A . C 3 HOH 204 1804 78 HOH HOH A . C 3 HOH 205 1805 8 HOH HOH A . C 3 HOH 206 1806 100 HOH HOH A . C 3 HOH 207 1807 196 HOH HOH A . C 3 HOH 208 1808 111 HOH HOH A . C 3 HOH 209 1809 200 HOH HOH A . C 3 HOH 210 1810 206 HOH HOH A . C 3 HOH 211 1811 189 HOH HOH A . C 3 HOH 212 1812 87 HOH HOH A . C 3 HOH 213 1813 192 HOH HOH A . C 3 HOH 214 1814 21 HOH HOH A . C 3 HOH 215 1815 97 HOH HOH A . C 3 HOH 216 1816 203 HOH HOH A . C 3 HOH 217 1817 79 HOH HOH A . C 3 HOH 218 1818 4 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 1323 ? CE ? A LYS 32 CE 2 1 Y 1 A LYS 1323 ? NZ ? A LYS 32 NZ 3 1 Y 0 A SER 1405 ? N A A SER 114 N 4 1 Y 0 A SER 1405 ? CA A A SER 114 CA 5 1 Y 0 A SER 1405 ? C A A SER 114 C 6 1 Y 0 A SER 1405 ? O A A SER 114 O 7 1 Y 0 A SER 1405 ? CB A A SER 114 CB 8 1 Y 0 A SER 1405 ? OG A A SER 114 OG # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 BUSTER '2.10.3 (29-NOV-2019)' ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 2 Aimless 0.7.4 13/12/18 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 PDB_EXTRACT 3.23 'SEP. 23, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? program ? ? 'data reduction' ? ? ? 5 REFMAC . ? program ? ? phasing ? ? ? # _cell.entry_id 5RKC _cell.length_a 81.830 _cell.length_b 27.400 _cell.length_c 55.850 _cell.angle_alpha 90.000 _cell.angle_beta 100.290 _cell.angle_gamma 90.000 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RKC _symmetry.Int_Tables_number 5 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.crystals_number 1 _exptl.entry_id 5RKC _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.000 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.75 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 29.61 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '20% PEG 8000, 0.04M potassium phosphate' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? # _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2019-07-20 _diffrn_detector.diffrn_id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97622 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_wavelength_list 0.97622 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5RKC _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.260 _reflns.d_resolution_high 1.240 _reflns.number_obs 25846 _reflns.number_all ? _reflns.percent_possible_obs 74.100 _reflns.pdbx_Rmerge_I_obs 0.025 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 29.300 _reflns.B_iso_Wilson_estimate 17.480 _reflns.pdbx_redundancy 6.000 _reflns.pdbx_Rrim_I_all 0.027 _reflns.pdbx_Rpim_I_all 0.010 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 154839 _reflns.pdbx_scaling_rejects 2 _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.240 1.270 ? 461 ? ? 0.546 ? ? ? 1.900 ? 1.200 ? 247 ? ? ? ? 9.800 0.735 0.487 0.650 1 2 5.550 40.260 ? 2638 ? ? 0.018 ? ? ? 6.200 ? 66.400 ? 427 ? ? ? ? 98.100 0.020 0.008 0.999 # _refine.entry_id 5RKC _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.2400 _refine.ls_d_res_low 40.2600 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 73.9000 _refine.ls_number_reflns_obs 25845 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1941 _refine.ls_R_factor_R_work 0.1925 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2244 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0100 _refine.ls_number_reflns_R_free 1296 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 21.9800 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.3723 _refine.aniso_B[2][2] -3.0974 _refine.aniso_B[3][3] 3.4697 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -2.1528 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9550 _refine.correlation_coeff_Fo_to_Fc_free 0.9530 _refine.overall_SU_R_Cruickshank_DPI 0.0640 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.0670 _refine.pdbx_overall_SU_R_Blow_DPI 0.0720 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.0730 _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3MB3 _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 84.140 _refine.B_iso_min 13.310 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_analyze.entry_id 5RKC _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_obs 0.170 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.2400 _refine_hist.d_res_low 40.2600 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 218 _refine_hist.number_atoms_total 1220 _refine_hist.pdbx_number_residues_total 118 _refine_hist.pdbx_B_iso_mean_ligand 15.68 _refine_hist.pdbx_B_iso_mean_solvent 32.46 _refine_hist.pdbx_number_atoms_protein 990 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' t_dihedral_angle_d 375 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes ? ? ? ? ? 'X-RAY DIFFRACTION' t_gen_planes 191 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1049 ? ? 10.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 133 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1324 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1049 0.008 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1420 0.850 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.600 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 14.010 ? ? ? # _refine_ls_shell.d_res_high 1.2400 _refine_ls_shell.d_res_low 1.2900 _refine_ls_shell.pdbx_total_number_of_bins_used 51 _refine_ls_shell.percent_reflns_obs 12.8700 _refine_ls_shell.number_reflns_R_work 491 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2030 _refine_ls_shell.R_factor_R_free 0.2996 _refine_ls_shell.percent_reflns_R_free 5.0300 _refine_ls_shell.number_reflns_R_free 26 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 517 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 5RKC _struct.title 'PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z234898257' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5RKC _struct_keywords.text 'SGC - Diamond I04-1 fragment screening, PanDDA, XChemExplorer, Fragment-based drug design, SAMPL7, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PHIP_HUMAN _struct_ref.pdbx_db_accession Q8WWQ0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKA YTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKRNTITKR ; _struct_ref.pdbx_align_begin 1315 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5RKC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 24 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 149 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8WWQ0 _struct_ref_seq.db_align_beg 1315 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1440 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1315 _struct_ref_seq.pdbx_auth_seq_align_end 1440 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5RKC MET A 1 ? UNP Q8WWQ0 ? ? 'initiating methionine' 1292 1 1 5RKC HIS A 2 ? UNP Q8WWQ0 ? ? 'expression tag' 1293 2 1 5RKC HIS A 3 ? UNP Q8WWQ0 ? ? 'expression tag' 1294 3 1 5RKC HIS A 4 ? UNP Q8WWQ0 ? ? 'expression tag' 1295 4 1 5RKC HIS A 5 ? UNP Q8WWQ0 ? ? 'expression tag' 1296 5 1 5RKC HIS A 6 ? UNP Q8WWQ0 ? ? 'expression tag' 1297 6 1 5RKC HIS A 7 ? UNP Q8WWQ0 ? ? 'expression tag' 1298 7 1 5RKC SER A 8 ? UNP Q8WWQ0 ? ? 'expression tag' 1299 8 1 5RKC SER A 9 ? UNP Q8WWQ0 ? ? 'expression tag' 1300 9 1 5RKC GLY A 10 ? UNP Q8WWQ0 ? ? 'expression tag' 1301 10 1 5RKC VAL A 11 ? UNP Q8WWQ0 ? ? 'expression tag' 1302 11 1 5RKC ASP A 12 ? UNP Q8WWQ0 ? ? 'expression tag' 1303 12 1 5RKC LEU A 13 ? UNP Q8WWQ0 ? ? 'expression tag' 1304 13 1 5RKC GLY A 14 ? UNP Q8WWQ0 ? ? 'expression tag' 1305 14 1 5RKC THR A 15 ? UNP Q8WWQ0 ? ? 'expression tag' 1306 15 1 5RKC GLU A 16 ? UNP Q8WWQ0 ? ? 'expression tag' 1307 16 1 5RKC ASN A 17 ? UNP Q8WWQ0 ? ? 'expression tag' 1308 17 1 5RKC LEU A 18 ? UNP Q8WWQ0 ? ? 'expression tag' 1309 18 1 5RKC TYR A 19 ? UNP Q8WWQ0 ? ? 'expression tag' 1310 19 1 5RKC PHE A 20 ? UNP Q8WWQ0 ? ? 'expression tag' 1311 20 1 5RKC GLN A 21 ? UNP Q8WWQ0 ? ? 'expression tag' 1312 21 1 5RKC SER A 22 ? UNP Q8WWQ0 ? ? 'expression tag' 1313 22 1 5RKC MET A 23 ? UNP Q8WWQ0 ? ? 'expression tag' 1314 23 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 29 ? CYS A 44 ? ALA A 1320 CYS A 1335 1 ? 16 HELX_P HELX_P2 AA2 GLU A 45 ? ARG A 51 ? GLU A 1336 ARG A 1342 5 ? 7 HELX_P HELX_P3 AA3 ASP A 61 ? ILE A 66 ? ASP A 1352 ILE A 1357 1 ? 6 HELX_P HELX_P4 AA4 ASP A 71 ? ALA A 81 ? ASP A 1362 ALA A 1372 1 ? 11 HELX_P HELX_P5 AA5 SER A 86 ? THR A 105 ? SER A 1377 THR A 1396 1 ? 20 HELX_P HELX_P6 AA6 SER A 110 ? LYS A 142 ? SER A 1401 LYS A 1433 1 ? 33 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id UWD _struct_site.pdbx_auth_seq_id 1501 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'binding site for residue UWD A 1501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 PRO A 49 ? PRO A 1340 . ? 1_555 ? 2 AC1 10 PHE A 50 ? PHE A 1341 . ? 1_555 ? 3 AC1 10 TYR A 59 ? TYR A 1350 . ? 1_555 ? 4 AC1 10 SER A 101 ? SER A 1392 . ? 1_555 ? 5 AC1 10 TYR A 104 ? TYR A 1395 . ? 1_555 ? 6 AC1 10 THR A 105 ? THR A 1396 . ? 1_555 ? 7 AC1 10 SER A 110 ? SER A 1401 . ? 1_555 ? 8 AC1 10 ILE A 112 ? ILE A 1403 . ? 1_555 ? 9 AC1 10 HOH C . ? HOH A 1607 . ? 1_555 ? 10 AC1 10 HOH C . ? HOH A 1714 . ? 1_555 ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 1808 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -14.2088 _pdbx_refine_tls.origin_y 12.5163 _pdbx_refine_tls.origin_z 12.8374 _pdbx_refine_tls.T[1][1] -0.0225 _pdbx_refine_tls.T[2][2] -0.0065 _pdbx_refine_tls.T[3][3] -0.0258 _pdbx_refine_tls.T[1][2] 0.0058 _pdbx_refine_tls.T[1][3] 0.0002 _pdbx_refine_tls.T[2][3] 0.0040 _pdbx_refine_tls.L[1][1] 0.7647 _pdbx_refine_tls.L[2][2] 0.2408 _pdbx_refine_tls.L[3][3] 1.0682 _pdbx_refine_tls.L[1][2] 0.1328 _pdbx_refine_tls.L[1][3] -0.5945 _pdbx_refine_tls.L[2][3] 0.0011 _pdbx_refine_tls.S[1][1] 0.0062 _pdbx_refine_tls.S[2][2] 0.0120 _pdbx_refine_tls.S[3][3] -0.0183 _pdbx_refine_tls.S[1][2] 0.0652 _pdbx_refine_tls.S[1][3] 0.0198 _pdbx_refine_tls.S[2][3] 0.0073 _pdbx_refine_tls.S[2][1] 0.0140 _pdbx_refine_tls.S[3][1] -0.0105 _pdbx_refine_tls.S[3][2] 0.0296 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1316 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 1434 _pdbx_refine_tls_group.selection_details '{ A|* }' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MR # _pdbx_entry_details.entry_id 5RKC _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1292 ? A MET 1 2 1 Y 1 A HIS 1293 ? A HIS 2 3 1 Y 1 A HIS 1294 ? A HIS 3 4 1 Y 1 A HIS 1295 ? A HIS 4 5 1 Y 1 A HIS 1296 ? A HIS 5 6 1 Y 1 A HIS 1297 ? A HIS 6 7 1 Y 1 A HIS 1298 ? A HIS 7 8 1 Y 1 A SER 1299 ? A SER 8 9 1 Y 1 A SER 1300 ? A SER 9 10 1 Y 1 A GLY 1301 ? A GLY 10 11 1 Y 1 A VAL 1302 ? A VAL 11 12 1 Y 1 A ASP 1303 ? A ASP 12 13 1 Y 1 A LEU 1304 ? A LEU 13 14 1 Y 1 A GLY 1305 ? A GLY 14 15 1 Y 1 A THR 1306 ? A THR 15 16 1 Y 1 A GLU 1307 ? A GLU 16 17 1 Y 1 A ASN 1308 ? A ASN 17 18 1 Y 1 A LEU 1309 ? A LEU 18 19 1 Y 1 A TYR 1310 ? A TYR 19 20 1 Y 1 A PHE 1311 ? A PHE 20 21 1 Y 1 A GLN 1312 ? A GLN 21 22 1 Y 1 A SER 1313 ? A SER 22 23 1 Y 1 A MET 1314 ? A MET 23 24 1 Y 1 A SER 1315 ? A SER 24 25 1 Y 1 A ASN 1435 ? A ASN 144 26 1 Y 1 A THR 1436 ? A THR 145 27 1 Y 1 A ILE 1437 ? A ILE 146 28 1 Y 1 A THR 1438 ? A THR 147 29 1 Y 1 A LYS 1439 ? A LYS 148 30 1 Y 1 A ARG 1440 ? A ARG 149 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 UWD N1 N Y N 372 UWD N3 N Y N 373 UWD C4 C Y N 374 UWD C5 C Y N 375 UWD C6 C Y N 376 UWD C7 C Y N 377 UWD N N N N 378 UWD C C N N 379 UWD C1 C N N 380 UWD C2 C Y N 381 UWD C3 C Y N 382 UWD N2 N Y N 383 UWD H1 H N N 384 UWD H2 H N N 385 UWD H3 H N N 386 UWD H4 H N N 387 UWD H5 H N N 388 UWD H7 H N N 389 UWD H8 H N N 390 UWD H9 H N N 391 UWD H10 H N N 392 UWD H11 H N N 393 VAL N N N N 394 VAL CA C N S 395 VAL C C N N 396 VAL O O N N 397 VAL CB C N N 398 VAL CG1 C N N 399 VAL CG2 C N N 400 VAL OXT O N N 401 VAL H H N N 402 VAL H2 H N N 403 VAL HA H N N 404 VAL HB H N N 405 VAL HG11 H N N 406 VAL HG12 H N N 407 VAL HG13 H N N 408 VAL HG21 H N N 409 VAL HG22 H N N 410 VAL HG23 H N N 411 VAL HXT H N N 412 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 UWD C N sing N N 358 UWD N2 N1 sing Y N 359 UWD N2 C3 doub Y N 360 UWD N1 C2 doub Y N 361 UWD C3 C4 sing Y N 362 UWD C3 N3 sing Y N 363 UWD N C1 sing N N 364 UWD C2 C1 sing N N 365 UWD C2 N3 sing Y N 366 UWD C4 C5 doub Y N 367 UWD N3 C7 sing Y N 368 UWD C5 C6 sing Y N 369 UWD C7 C6 doub Y N 370 UWD C4 H1 sing N N 371 UWD C5 H2 sing N N 372 UWD C6 H3 sing N N 373 UWD C7 H4 sing N N 374 UWD N H5 sing N N 375 UWD C H7 sing N N 376 UWD C H8 sing N N 377 UWD C H9 sing N N 378 UWD C1 H10 sing N N 379 UWD C1 H11 sing N N 380 VAL N CA sing N N 381 VAL N H sing N N 382 VAL N H2 sing N N 383 VAL CA C sing N N 384 VAL CA CB sing N N 385 VAL CA HA sing N N 386 VAL C O doub N N 387 VAL C OXT sing N N 388 VAL CB CG1 sing N N 389 VAL CB CG2 sing N N 390 VAL CB HB sing N N 391 VAL CG1 HG11 sing N N 392 VAL CG1 HG12 sing N N 393 VAL CG1 HG13 sing N N 394 VAL CG2 HG21 sing N N 395 VAL CG2 HG22 sing N N 396 VAL CG2 HG23 sing N N 397 VAL OXT HXT sing N N 398 # _pdbx_deposit_group.group_id G_1002162 _pdbx_deposit_group.group_description ;The second bromodomain of Pleckstrin homology domain interacting protein (PHIP) screened against the DSI and FragLite fragment libraries by X-ray Crystallography at the XChem facility of Diamond Light Source beamline I04-1 ; _pdbx_deposit_group.group_title 'PanDDA analysis group deposition' _pdbx_deposit_group.group_type 'changed state' # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id UWD _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id UWD _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 5RKC _atom_sites.fract_transf_matrix[1][1] 0.012220 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002219 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.036496 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018198 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_