data_5S9R # _entry.id 5S9R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.352 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5S9R pdb_00005s9r 10.2210/pdb5s9r/pdb WWPDB D_1001404236 ? ? # _pdbx_database_status.entry_id 5S9R _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2021-04-01 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # _audit_author.name 'Sheriff, S.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Med.Chem. _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 0022-2623 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 64 _citation.language ? _citation.page_first 14247 _citation.page_last 14265 _citation.title ;Discovery and Preclinical Pharmacology of an Oral Bromodomain and Extra-Terminal (BET) Inhibitor Using Scaffold-Hopping and Structure-Guided Drug Design. ; _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.1c00625 _citation.pdbx_database_id_PubMed 34543572 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gavai, A.V.' 1 0000-0002-6067-4176 primary 'Norris, D.' 2 ? primary 'Delucca, G.' 3 ? primary 'Tortolani, D.' 4 ? primary 'Tokarski, J.S.' 5 ? primary 'Dodd, D.' 6 ? primary ;O'Malley, D. ; 7 ? primary 'Zhao, Y.' 8 ? primary 'Quesnelle, C.' 9 ? primary 'Gill, P.' 10 ? primary 'Vaccaro, W.' 11 ? primary 'Huynh, T.' 12 ? primary 'Ahuja, V.' 13 ? primary 'Han, W.C.' 14 ? primary 'Mussari, C.' 15 ? primary 'Harikrishnan, L.' 16 ? primary 'Kamau, M.' 17 ? primary 'Poss, M.' 18 ? primary 'Sheriff, S.' 19 ? primary 'Yan, C.' 20 ? primary 'Marsilio, F.' 21 ? primary 'Menard, K.' 22 ? primary 'Wen, M.L.' 23 ? primary 'Rampulla, R.' 24 ? primary 'Wu, D.R.' 25 ? primary 'Li, J.' 26 0000-0002-8445-9796 primary 'Zhang, H.' 27 ? primary 'Li, P.' 28 ? primary 'Sun, D.' 29 ? primary 'Yip, H.' 30 ? primary 'Traeger, S.C.' 31 ? primary 'Zhang, Y.' 32 ? primary 'Mathur, A.' 33 ? primary 'Zhang, H.' 34 ? primary 'Huang, C.' 35 ? primary 'Yang, Z.' 36 ? primary 'Ranasinghe, A.' 37 ? primary 'Everlof, G.' 38 ? primary 'Raghavan, N.' 39 ? primary 'Tye, C.K.' 40 ? primary 'Wee, S.' 41 ? primary 'Hunt, J.T.' 42 ? primary 'Vite, G.' 43 ? primary 'Westhouse, R.' 44 ? primary 'Lee, F.Y.' 45 ? # _cell.entry_id 5S9R _cell.length_a 39.600 _cell.length_b 48.500 _cell.length_c 58.100 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S9R _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 4' 15207.499 1 ? ? ? ? 2 non-polymer syn '2-{3-(1,4-dimethyl-1H-1,2,3-triazol-5-yl)-5-[(S)-(oxan-4-yl)(phenyl)methyl]-5H-pyrido[3,2-b]indol-7-yl}propan-2-ol' 495.615 1 ? ? ? ? 3 non-polymer syn 'IODIDE ION' 126.904 3 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 5 water nat water 18.015 37 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein HUNK1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYW NAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYW NAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 ASN n 1 5 PRO n 1 6 PRO n 1 7 PRO n 1 8 PRO n 1 9 GLU n 1 10 THR n 1 11 SER n 1 12 ASN n 1 13 PRO n 1 14 ASN n 1 15 LYS n 1 16 PRO n 1 17 LYS n 1 18 ARG n 1 19 GLN n 1 20 THR n 1 21 ASN n 1 22 GLN n 1 23 LEU n 1 24 GLN n 1 25 TYR n 1 26 LEU n 1 27 LEU n 1 28 ARG n 1 29 VAL n 1 30 VAL n 1 31 LEU n 1 32 LYS n 1 33 THR n 1 34 LEU n 1 35 TRP n 1 36 LYS n 1 37 HIS n 1 38 GLN n 1 39 PHE n 1 40 ALA n 1 41 TRP n 1 42 PRO n 1 43 PHE n 1 44 GLN n 1 45 GLN n 1 46 PRO n 1 47 VAL n 1 48 ASP n 1 49 ALA n 1 50 VAL n 1 51 LYS n 1 52 LEU n 1 53 ASN n 1 54 LEU n 1 55 PRO n 1 56 ASP n 1 57 TYR n 1 58 TYR n 1 59 LYS n 1 60 ILE n 1 61 ILE n 1 62 LYS n 1 63 THR n 1 64 PRO n 1 65 MET n 1 66 ASP n 1 67 MET n 1 68 GLY n 1 69 THR n 1 70 ILE n 1 71 LYS n 1 72 LYS n 1 73 ARG n 1 74 LEU n 1 75 GLU n 1 76 ASN n 1 77 ASN n 1 78 TYR n 1 79 TYR n 1 80 TRP n 1 81 ASN n 1 82 ALA n 1 83 GLN n 1 84 GLU n 1 85 CYS n 1 86 ILE n 1 87 GLN n 1 88 ASP n 1 89 PHE n 1 90 ASN n 1 91 THR n 1 92 MET n 1 93 PHE n 1 94 THR n 1 95 ASN n 1 96 CYS n 1 97 TYR n 1 98 ILE n 1 99 TYR n 1 100 ASN n 1 101 LYS n 1 102 PRO n 1 103 GLY n 1 104 ASP n 1 105 ASP n 1 106 ILE n 1 107 VAL n 1 108 LEU n 1 109 MET n 1 110 ALA n 1 111 GLU n 1 112 ALA n 1 113 LEU n 1 114 GLU n 1 115 LYS n 1 116 LEU n 1 117 PHE n 1 118 LEU n 1 119 GLN n 1 120 LYS n 1 121 ILE n 1 122 ASN n 1 123 GLU n 1 124 LEU n 1 125 PRO n 1 126 THR n 1 127 GLU n 1 128 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 128 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD4, HUNK1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD4_HUMAN _struct_ref.pdbx_db_accession O60885 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQ ECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _struct_ref.pdbx_align_begin 44 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5S9R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 128 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O60885 _struct_ref_seq.db_align_beg 44 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 168 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 44 _struct_ref_seq.pdbx_auth_seq_align_end 168 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5S9R GLY A 1 ? UNP O60885 ? ? 'expression tag' 41 1 1 5S9R HIS A 2 ? UNP O60885 ? ? 'expression tag' 42 2 1 5S9R MET A 3 ? UNP O60885 ? ? 'expression tag' 43 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YWA non-polymer . '2-{3-(1,4-dimethyl-1H-1,2,3-triazol-5-yl)-5-[(S)-(oxan-4-yl)(phenyl)methyl]-5H-pyrido[3,2-b]indol-7-yl}propan-2-ol' ? 'C30 H33 N5 O2' 495.615 # _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 _exptl.entry_id 5S9R # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.83 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 32.95 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.8 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '100mM Bis-Tris Propane, pH 7.82, 200mM sodium iodide, 20%(w/v) PEG3350, 10% (v/v) ethylene glycol' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-300' _diffrn_detector.pdbx_collection_date 2014-05-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.980 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CLSI BEAMLINE 08ID-1' _diffrn_source.pdbx_wavelength_list 0.980 _diffrn_source.pdbx_wavelength 0.980 _diffrn_source.pdbx_synchrotron_site CLSI _diffrn_source.pdbx_synchrotron_beamline 08ID-1 # _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 50.000 _reflns.number_obs 10069 _reflns.pdbx_netI_over_sigmaI 16.200 _reflns.pdbx_Rsym_value 0.102 _reflns.pdbx_redundancy 5.900 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_I 0.000 _reflns.B_iso_Wilson_estimate 23.350 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5S9R _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rmerge_I_obs ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.850 _reflns_shell.d_res_low 1.920 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_rejects 0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 3.200 _reflns_shell.pdbx_Rsym_value 0.669 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 5.800 _reflns_shell.percent_possible_obs ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.percent_possible_all 100.000 _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_CC_half ? # _refine.entry_id 5S9R _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.8500 _refine.ls_d_res_low 13.5400 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7800 _refine.ls_number_reflns_obs 9958 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2096 _refine.ls_R_factor_R_work 0.2077 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2313 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 8.2300 _refine.ls_number_reflns_R_free 820 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 23.9300 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 8.0838 _refine.aniso_B[2][2] -14.4991 _refine.aniso_B[3][3] 6.4153 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.8952 _refine.correlation_coeff_Fo_to_Fc_free 0.8803 _refine.overall_SU_R_Cruickshank_DPI 0.1750 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.1430 _refine.pdbx_overall_SU_R_Blow_DPI 0.1770 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.1440 _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3MXF _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 92.040 _refine.B_iso_min 8.530 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_analyze.entry_id 5S9R _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_obs 0.214 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8500 _refine_hist.d_res_low 13.5400 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 1121 _refine_hist.pdbx_number_residues_total 126 _refine_hist.pdbx_B_iso_mean_ligand 23.78 _refine_hist.pdbx_B_iso_mean_solvent 28.75 _refine_hist.pdbx_number_atoms_protein 1036 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' t_dihedral_angle_d 379 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 32 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 191 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1148 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 138 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1363 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1148 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1593 0.960 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.010 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 17.320 ? ? ? # _refine_ls_shell.d_res_high 1.8500 _refine_ls_shell.d_res_low 2.0700 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 99.7800 _refine_ls_shell.number_reflns_R_work 2557 _refine_ls_shell.R_factor_all 0.1878 _refine_ls_shell.R_factor_R_work 0.1819 _refine_ls_shell.R_factor_R_free 0.2514 _refine_ls_shell.percent_reflns_R_free 8.3200 _refine_ls_shell.number_reflns_R_free 232 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2789 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 5S9R _struct.title ;CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX WITH BMS-986158, 2-{3-(1,4-dimethyl-1H-1,2,3-triazol-5-yl)-5-[(S)-(oxan-4-yl)(phenyl)methyl]-5H-pyrido[3,2-b]indol-7-yl}propan-2-ol ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5S9R _struct_keywords.text ;BROMODOMAIN-CONTAINING PROTEIN 4 ISOFORM LONG, BRD4, BROMODOMAIN CONTAINING PROTEIN 4, CAP, HUNK1, MCAP, MITOTIC CHROMOSOME ASSOCIATED PROTEIN SGC, CELL CYCLE ; _struct_keywords.pdbx_keywords 'CELL CYCLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 20 ? VAL A 29 ? THR A 60 VAL A 69 1 ? 10 HELX_P HELX_P2 AA2 VAL A 29 ? LYS A 36 ? VAL A 69 LYS A 76 1 ? 8 HELX_P HELX_P3 AA3 ALA A 40 ? GLN A 44 ? ALA A 80 GLN A 84 5 ? 5 HELX_P HELX_P4 AA4 ASP A 56 ? ILE A 61 ? ASP A 96 ILE A 101 1 ? 6 HELX_P HELX_P5 AA5 ASP A 66 ? ASN A 76 ? ASP A 106 ASN A 116 1 ? 11 HELX_P HELX_P6 AA6 ASN A 81 ? ASN A 100 ? ASN A 121 ASN A 140 1 ? 20 HELX_P HELX_P7 AA7 ASP A 104 ? GLU A 123 ? ASP A 144 GLU A 163 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A YWA 301 ? 11 'binding site for residue YWA A 301' AC2 Software A IOD 302 ? 1 'binding site for residue IOD A 302' AC3 Software A IOD 303 ? 1 'binding site for residue IOD A 303' AC4 Software A IOD 304 ? 2 'binding site for residue IOD A 304' AC5 Software A EDO 305 ? 5 'binding site for residue EDO A 305' AC6 Software A EDO 306 ? 8 'binding site for residue EDO A 306' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 GLN A 19 ? GLN A 59 . ? 2_454 ? 2 AC1 11 TRP A 41 ? TRP A 81 . ? 1_555 ? 3 AC1 11 PRO A 42 ? PRO A 82 . ? 1_555 ? 4 AC1 11 PHE A 43 ? PHE A 83 . ? 1_555 ? 5 AC1 11 LEU A 52 ? LEU A 92 . ? 1_555 ? 6 AC1 11 LEU A 54 ? LEU A 94 . ? 1_555 ? 7 AC1 11 ASN A 77 ? ASN A 117 . ? 2_454 ? 8 AC1 11 ASN A 100 ? ASN A 140 . ? 1_555 ? 9 AC1 11 MET A 109 ? MET A 149 . ? 1_555 ? 10 AC1 11 HOH H . ? HOH A 402 . ? 1_555 ? 11 AC1 11 HOH H . ? HOH A 422 . ? 1_555 ? 12 AC2 1 ILE A 106 ? ILE A 146 . ? 1_555 ? 13 AC3 1 GLN A 19 ? GLN A 59 . ? 1_555 ? 14 AC4 2 ASN A 12 ? ASN A 52 . ? 1_555 ? 15 AC4 2 ASN A 14 ? ASN A 54 . ? 1_555 ? 16 AC5 5 ILE A 60 ? ILE A 100 . ? 1_555 ? 17 AC5 5 ILE A 61 ? ILE A 101 . ? 1_555 ? 18 AC5 5 LYS A 62 ? LYS A 102 . ? 1_555 ? 19 AC5 5 THR A 63 ? THR A 103 . ? 1_555 ? 20 AC5 5 ASN A 95 ? ASN A 135 . ? 1_555 ? 21 AC6 8 ASN A 4 ? ASN A 44 . ? 1_555 ? 22 AC6 8 PRO A 5 ? PRO A 45 . ? 1_555 ? 23 AC6 8 PRO A 6 ? PRO A 46 . ? 1_555 ? 24 AC6 8 PRO A 7 ? PRO A 47 . ? 1_555 ? 25 AC6 8 PRO A 46 ? PRO A 86 . ? 1_555 ? 26 AC6 8 VAL A 47 ? VAL A 87 . ? 1_555 ? 27 AC6 8 TYR A 58 ? TYR A 98 . ? 1_555 ? 28 AC6 8 HOH H . ? HOH A 410 . ? 1_555 ? # _atom_sites.entry_id 5S9R _atom_sites.fract_transf_matrix[1][1] 0.025253 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020619 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017212 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 41 41 GLY GLY A . n A 1 2 HIS 2 42 42 HIS HIS A . n A 1 3 MET 3 43 43 MET MET A . n A 1 4 ASN 4 44 44 ASN ASN A . n A 1 5 PRO 5 45 45 PRO PRO A . n A 1 6 PRO 6 46 46 PRO PRO A . n A 1 7 PRO 7 47 47 PRO PRO A . n A 1 8 PRO 8 48 48 PRO PRO A . n A 1 9 GLU 9 49 49 GLU GLU A . n A 1 10 THR 10 50 50 THR THR A . n A 1 11 SER 11 51 51 SER SER A . n A 1 12 ASN 12 52 52 ASN ASN A . n A 1 13 PRO 13 53 53 PRO PRO A . n A 1 14 ASN 14 54 54 ASN ASN A . n A 1 15 LYS 15 55 55 LYS LYS A . n A 1 16 PRO 16 56 56 PRO PRO A . n A 1 17 LYS 17 57 57 LYS LYS A . n A 1 18 ARG 18 58 58 ARG ARG A . n A 1 19 GLN 19 59 59 GLN GLN A . n A 1 20 THR 20 60 60 THR THR A . n A 1 21 ASN 21 61 61 ASN ASN A . n A 1 22 GLN 22 62 62 GLN GLN A . n A 1 23 LEU 23 63 63 LEU LEU A . n A 1 24 GLN 24 64 64 GLN GLN A . n A 1 25 TYR 25 65 65 TYR TYR A . n A 1 26 LEU 26 66 66 LEU LEU A . n A 1 27 LEU 27 67 67 LEU LEU A . n A 1 28 ARG 28 68 68 ARG ARG A . n A 1 29 VAL 29 69 69 VAL VAL A . n A 1 30 VAL 30 70 70 VAL VAL A . n A 1 31 LEU 31 71 71 LEU LEU A . n A 1 32 LYS 32 72 72 LYS LYS A . n A 1 33 THR 33 73 73 THR THR A . n A 1 34 LEU 34 74 74 LEU LEU A . n A 1 35 TRP 35 75 75 TRP TRP A . n A 1 36 LYS 36 76 76 LYS LYS A . n A 1 37 HIS 37 77 77 HIS HIS A . n A 1 38 GLN 38 78 78 GLN GLN A . n A 1 39 PHE 39 79 79 PHE PHE A . n A 1 40 ALA 40 80 80 ALA ALA A . n A 1 41 TRP 41 81 81 TRP TRP A . n A 1 42 PRO 42 82 82 PRO PRO A . n A 1 43 PHE 43 83 83 PHE PHE A . n A 1 44 GLN 44 84 84 GLN GLN A . n A 1 45 GLN 45 85 85 GLN GLN A . n A 1 46 PRO 46 86 86 PRO PRO A . n A 1 47 VAL 47 87 87 VAL VAL A . n A 1 48 ASP 48 88 88 ASP ASP A . n A 1 49 ALA 49 89 89 ALA ALA A . n A 1 50 VAL 50 90 90 VAL VAL A . n A 1 51 LYS 51 91 91 LYS LYS A . n A 1 52 LEU 52 92 92 LEU LEU A . n A 1 53 ASN 53 93 93 ASN ASN A . n A 1 54 LEU 54 94 94 LEU LEU A . n A 1 55 PRO 55 95 95 PRO PRO A . n A 1 56 ASP 56 96 96 ASP ASP A . n A 1 57 TYR 57 97 97 TYR TYR A . n A 1 58 TYR 58 98 98 TYR TYR A . n A 1 59 LYS 59 99 99 LYS LYS A . n A 1 60 ILE 60 100 100 ILE ILE A . n A 1 61 ILE 61 101 101 ILE ILE A . n A 1 62 LYS 62 102 102 LYS LYS A . n A 1 63 THR 63 103 103 THR THR A . n A 1 64 PRO 64 104 104 PRO PRO A . n A 1 65 MET 65 105 105 MET MET A . n A 1 66 ASP 66 106 106 ASP ASP A . n A 1 67 MET 67 107 107 MET MET A . n A 1 68 GLY 68 108 108 GLY GLY A . n A 1 69 THR 69 109 109 THR THR A . n A 1 70 ILE 70 110 110 ILE ILE A . n A 1 71 LYS 71 111 111 LYS LYS A . n A 1 72 LYS 72 112 112 LYS LYS A . n A 1 73 ARG 73 113 113 ARG ARG A . n A 1 74 LEU 74 114 114 LEU LEU A . n A 1 75 GLU 75 115 115 GLU GLU A . n A 1 76 ASN 76 116 116 ASN ASN A . n A 1 77 ASN 77 117 117 ASN ASN A . n A 1 78 TYR 78 118 118 TYR TYR A . n A 1 79 TYR 79 119 119 TYR TYR A . n A 1 80 TRP 80 120 120 TRP TRP A . n A 1 81 ASN 81 121 121 ASN ASN A . n A 1 82 ALA 82 122 122 ALA ALA A . n A 1 83 GLN 83 123 123 GLN GLN A . n A 1 84 GLU 84 124 124 GLU GLU A . n A 1 85 CYS 85 125 125 CYS CYS A . n A 1 86 ILE 86 126 126 ILE ILE A . n A 1 87 GLN 87 127 127 GLN GLN A . n A 1 88 ASP 88 128 128 ASP ASP A . n A 1 89 PHE 89 129 129 PHE PHE A . n A 1 90 ASN 90 130 130 ASN ASN A . n A 1 91 THR 91 131 131 THR THR A . n A 1 92 MET 92 132 132 MET MET A . n A 1 93 PHE 93 133 133 PHE PHE A . n A 1 94 THR 94 134 134 THR THR A . n A 1 95 ASN 95 135 135 ASN ASN A . n A 1 96 CYS 96 136 136 CYS CYS A . n A 1 97 TYR 97 137 137 TYR TYR A . n A 1 98 ILE 98 138 138 ILE ILE A . n A 1 99 TYR 99 139 139 TYR TYR A . n A 1 100 ASN 100 140 140 ASN ASN A . n A 1 101 LYS 101 141 141 LYS LYS A . n A 1 102 PRO 102 142 142 PRO PRO A . n A 1 103 GLY 103 143 143 GLY GLY A . n A 1 104 ASP 104 144 144 ASP ASP A . n A 1 105 ASP 105 145 145 ASP ASP A . n A 1 106 ILE 106 146 146 ILE ILE A . n A 1 107 VAL 107 147 147 VAL VAL A . n A 1 108 LEU 108 148 148 LEU LEU A . n A 1 109 MET 109 149 149 MET MET A . n A 1 110 ALA 110 150 150 ALA ALA A . n A 1 111 GLU 111 151 151 GLU GLU A . n A 1 112 ALA 112 152 152 ALA ALA A . n A 1 113 LEU 113 153 153 LEU LEU A . n A 1 114 GLU 114 154 154 GLU GLU A . n A 1 115 LYS 115 155 155 LYS LYS A . n A 1 116 LEU 116 156 156 LEU LEU A . n A 1 117 PHE 117 157 157 PHE PHE A . n A 1 118 LEU 118 158 158 LEU LEU A . n A 1 119 GLN 119 159 159 GLN GLN A . n A 1 120 LYS 120 160 160 LYS LYS A . n A 1 121 ILE 121 161 161 ILE ILE A . n A 1 122 ASN 122 162 162 ASN ASN A . n A 1 123 GLU 123 163 163 GLU GLU A . n A 1 124 LEU 124 164 164 LEU LEU A . n A 1 125 PRO 125 165 165 PRO PRO A . n A 1 126 THR 126 166 166 THR THR A . n A 1 127 GLU 127 167 ? ? ? A . n A 1 128 GLU 128 168 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YWA 1 301 301 YWA LG1 A . C 3 IOD 1 302 1 IOD IOD A . D 3 IOD 1 303 2 IOD IOD A . E 3 IOD 1 304 3 IOD IOD A . F 4 EDO 1 305 11 EDO EDO A . G 4 EDO 1 306 12 EDO EDO A . H 5 HOH 1 401 33 HOH HOH A . H 5 HOH 2 402 1 HOH HOH A . H 5 HOH 3 403 21 HOH HOH A . H 5 HOH 4 404 32 HOH HOH A . H 5 HOH 5 405 25 HOH HOH A . H 5 HOH 6 406 36 HOH HOH A . H 5 HOH 7 407 17 HOH HOH A . H 5 HOH 8 408 27 HOH HOH A . H 5 HOH 9 409 22 HOH HOH A . H 5 HOH 10 410 23 HOH HOH A . H 5 HOH 11 411 2 HOH HOH A . H 5 HOH 12 412 13 HOH HOH A . H 5 HOH 13 413 4 HOH HOH A . H 5 HOH 14 414 5 HOH HOH A . H 5 HOH 15 415 20 HOH HOH A . H 5 HOH 16 416 37 HOH HOH A . H 5 HOH 17 417 8 HOH HOH A . H 5 HOH 18 418 15 HOH HOH A . H 5 HOH 19 419 12 HOH HOH A . H 5 HOH 20 420 7 HOH HOH A . H 5 HOH 21 421 35 HOH HOH A . H 5 HOH 22 422 6 HOH HOH A . H 5 HOH 23 423 24 HOH HOH A . H 5 HOH 24 424 10 HOH HOH A . H 5 HOH 25 425 26 HOH HOH A . H 5 HOH 26 426 18 HOH HOH A . H 5 HOH 27 427 19 HOH HOH A . H 5 HOH 28 428 9 HOH HOH A . H 5 HOH 29 429 3 HOH HOH A . H 5 HOH 30 430 28 HOH HOH A . H 5 HOH 31 431 34 HOH HOH A . H 5 HOH 32 432 14 HOH HOH A . H 5 HOH 33 433 31 HOH HOH A . H 5 HOH 34 434 16 HOH HOH A . H 5 HOH 35 435 29 HOH HOH A . H 5 HOH 36 436 11 HOH HOH A . H 5 HOH 37 437 30 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-09-29 2 'Structure model' 1 1 2021-11-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 HKL-2000 . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 HKL-2000 . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 BUSTER 2.11.5 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 5 PDB_EXTRACT 3.22 'July. 13, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _pdbx_entry_details.entry_id 5S9R _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 69 ? ? -124.82 -61.07 2 1 LEU A 94 ? ? -117.68 71.18 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 54 ? CG ? A ASN 14 CG 2 1 Y 1 A ASN 54 ? OD1 ? A ASN 14 OD1 3 1 Y 1 A ASN 54 ? ND2 ? A ASN 14 ND2 4 1 Y 1 A LYS 55 ? CE ? A LYS 15 CE 5 1 Y 1 A LYS 55 ? NZ ? A LYS 15 NZ 6 1 Y 1 A LYS 91 ? CE ? A LYS 51 CE 7 1 Y 1 A LYS 91 ? NZ ? A LYS 51 NZ 8 1 Y 1 A LYS 112 ? CE ? A LYS 72 CE 9 1 Y 1 A LYS 112 ? NZ ? A LYS 72 NZ 10 1 Y 1 A LYS 141 ? NZ ? A LYS 101 NZ 11 1 Y 1 A LYS 155 ? CD ? A LYS 115 CD 12 1 Y 1 A LYS 155 ? CE ? A LYS 115 CE 13 1 Y 1 A LYS 155 ? NZ ? A LYS 115 NZ 14 1 Y 1 A THR 166 ? OG1 ? A THR 126 OG1 15 1 Y 1 A THR 166 ? CG2 ? A THR 126 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 167 ? A GLU 127 2 1 Y 1 A GLU 168 ? A GLU 128 # _pdbx_audit_support.ordinal 1 _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.grant_number ? _pdbx_audit_support.country 'United States' # _pdbx_deposit_group.group_id G_1002195 _pdbx_deposit_group.group_title BET _pdbx_deposit_group.group_description 'Structures deposited in support of A. Gavai et al., J.Med.Chem., about to be submitted' _pdbx_deposit_group.group_type undefined # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id YWA _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id YWA _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-{3-(1,4-dimethyl-1H-1,2,3-triazol-5-yl)-5-[(S)-(oxan-4-yl)(phenyl)methyl]-5H-pyrido[3,2-b]indol-7-yl}propan-2-ol' YWA 3 'IODIDE ION' IOD 4 1,2-ETHANEDIOL EDO 5 water HOH #