HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-JUN-21 5SAY TITLE DDR1, N-[2-[3-(2-AMINOPYRIMIDIN-5-YL)OXYPHENYL]ETHYL]-3- TITLE 2 (TRIFLUOROMETHOXY)BENZAMIDE, 2.190A, P1211, RFREE=27.7% COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TYROSINE KINASE DOMAIN, RESIDUES 593-913; COMPND 5 SYNONYM: EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1,CD167 ANTIGEN-LIKE COMPND 6 FAMILY MEMBER A,CELL ADHESION KINASE,DISCOIDIN RECEPTOR TYROSINE COMPND 7 KINASE,HGK2,MAMMARY CARCINOMA KINASE 10,MCK-10,PROTEIN-TYROSINE COMPND 8 KINASE 3A,PROTEIN-TYROSINE KINASE RTK-6,TRK E,TYROSINE KINASE DDR, COMPND 9 TYROSINE-PROTEIN KINASE CAK; COMPND 10 EC: 2.7.10.1; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDR1, CAK, EDDR1, NEP, NTRK4, PTK3A, RTK6, TRKE; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS RTK, RECEPTOR TYROSINE KINASE, COLLAGEN, DISCOIDIN DOMAIN;, KEYWDS 2 TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.STIHLE,H.RICHTER,J.BENZ,R.HOCHSTRASSER,M.G.RUDOLPH REVDAT 2 03-APR-24 5SAY 1 REMARK REVDAT 1 29-JUN-22 5SAY 0 JRNL AUTH H.RICHTER,M.PRUNOTTO,B.KUHN,M.G.RUDOLPH JRNL TITL CRYSTAL STRUCTURE OF A DDR1 COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1589 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 33910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5315 - 5.0120 1.00 2708 153 0.1535 0.2020 REMARK 3 2 5.0120 - 3.9789 1.00 2706 158 0.1316 0.2081 REMARK 3 3 3.9789 - 3.4762 1.00 2664 157 0.1542 0.2356 REMARK 3 4 3.4762 - 3.1584 1.00 2749 113 0.1892 0.2603 REMARK 3 5 3.1584 - 2.9321 1.00 2648 147 0.2261 0.3306 REMARK 3 6 2.9321 - 2.7593 1.00 2699 128 0.2399 0.3629 REMARK 3 7 2.7593 - 2.6211 1.00 2696 131 0.2495 0.3257 REMARK 3 8 2.6211 - 2.5070 1.00 2647 153 0.2532 0.3168 REMARK 3 9 2.5070 - 2.4105 1.00 2674 138 0.2741 0.3612 REMARK 3 10 2.4105 - 2.3273 1.00 2678 161 0.2945 0.3609 REMARK 3 11 2.3273 - 2.2545 0.99 2655 138 0.3164 0.3700 REMARK 3 12 2.2545 - 2.1901 0.99 2668 141 0.3308 0.3988 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4809 REMARK 3 ANGLE : 1.257 6508 REMARK 3 CHIRALITY : 0.050 698 REMARK 3 PLANARITY : 0.006 846 REMARK 3 DIHEDRAL : 13.613 1830 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 602 THROUGH 678 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9540 -6.2603 31.7337 REMARK 3 T TENSOR REMARK 3 T11: 0.4278 T22: 0.2733 REMARK 3 T33: 0.2798 T12: 0.0256 REMARK 3 T13: -0.0202 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 2.1357 L22: 5.5205 REMARK 3 L33: 4.5055 L12: 0.9973 REMARK 3 L13: 2.1755 L23: 2.8116 REMARK 3 S TENSOR REMARK 3 S11: 0.1134 S12: 0.0286 S13: -0.3885 REMARK 3 S21: -0.0288 S22: 0.1803 S23: -0.3028 REMARK 3 S31: 0.2664 S32: 0.0369 S33: -0.2031 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 679 THROUGH 733 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3468 1.6575 17.9648 REMARK 3 T TENSOR REMARK 3 T11: 0.3200 T22: 0.1556 REMARK 3 T33: 0.2318 T12: 0.0063 REMARK 3 T13: -0.0437 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 1.9255 L22: 2.3495 REMARK 3 L33: 4.3087 L12: -0.2767 REMARK 3 L13: 0.8994 L23: -1.0113 REMARK 3 S TENSOR REMARK 3 S11: 0.2270 S12: 0.0133 S13: -0.1413 REMARK 3 S21: -0.3233 S22: 0.0168 S23: -0.0116 REMARK 3 S31: 0.7900 S32: -0.0284 S33: -0.2089 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 734 THROUGH 901 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5316 20.0097 20.5860 REMARK 3 T TENSOR REMARK 3 T11: 0.1386 T22: 0.1463 REMARK 3 T33: 0.1393 T12: 0.0178 REMARK 3 T13: 0.0029 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.8248 L22: 2.5294 REMARK 3 L33: 2.6544 L12: 0.6433 REMARK 3 L13: 0.2817 L23: -0.0948 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: 0.0026 S13: -0.0070 REMARK 3 S21: 0.0402 S22: -0.0268 S23: 0.0011 REMARK 3 S31: -0.0699 S32: 0.0990 S33: 0.0152 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 602 THROUGH 662 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7390 47.9088 59.1918 REMARK 3 T TENSOR REMARK 3 T11: 0.4339 T22: 0.2629 REMARK 3 T33: 0.3158 T12: 0.0433 REMARK 3 T13: 0.0179 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 3.1908 L22: 4.3526 REMARK 3 L33: 3.4987 L12: 1.6168 REMARK 3 L13: -0.3425 L23: -0.6771 REMARK 3 S TENSOR REMARK 3 S11: -0.1104 S12: 0.0645 S13: 0.2867 REMARK 3 S21: -0.1703 S22: 0.0584 S23: 0.1046 REMARK 3 S31: -0.2179 S32: -0.1377 S33: 0.0324 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 663 THROUGH 776 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8945 32.8547 56.6354 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: 0.1851 REMARK 3 T33: 0.2328 T12: -0.0444 REMARK 3 T13: -0.0013 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.4202 L22: 1.7790 REMARK 3 L33: 3.1159 L12: -0.4685 REMARK 3 L13: -1.0969 L23: 0.4402 REMARK 3 S TENSOR REMARK 3 S11: 0.1358 S12: 0.0106 S13: 0.2090 REMARK 3 S21: -0.0275 S22: -0.0191 S23: 0.0250 REMARK 3 S31: -0.4029 S32: 0.1042 S33: -0.1263 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 777 THROUGH 871 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7626 14.7007 51.2189 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.1912 REMARK 3 T33: 0.1549 T12: -0.0193 REMARK 3 T13: -0.0152 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.6254 L22: 2.6145 REMARK 3 L33: 3.6194 L12: 0.1657 REMARK 3 L13: -0.0310 L23: 0.1006 REMARK 3 S TENSOR REMARK 3 S11: -0.0515 S12: -0.1342 S13: -0.0873 REMARK 3 S21: 0.1964 S22: 0.0150 S23: 0.0545 REMARK 3 S31: 0.1847 S32: -0.2095 S33: 0.0297 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 872 THROUGH 905 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.4918 13.8247 53.1761 REMARK 3 T TENSOR REMARK 3 T11: 0.1599 T22: 0.2886 REMARK 3 T33: 0.3075 T12: 0.0572 REMARK 3 T13: -0.0461 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 3.3544 L22: 5.2874 REMARK 3 L33: 3.5945 L12: 1.0908 REMARK 3 L13: 2.7606 L23: 3.0340 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: 0.0774 S13: -0.3100 REMARK 3 S21: 0.2449 S22: 0.1245 S23: -0.7382 REMARK 3 S31: 0.1883 S32: 0.3916 S33: -0.0139 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID A REMARK 3 SELECTION : CHAIN B AND SEGID B REMARK 3 ATOM PAIRS NUMBER : 2540 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1001404279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34031 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 45.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.450 REMARK 200 R MERGE (I) : 0.21300 REMARK 200 R SYM (I) : 0.21300 REMARK 200 FOR THE DATA SET : 4.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.29 REMARK 200 R MERGE FOR SHELL (I) : 1.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INHOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9.2 MG/ML PROTEIN IN 20MM HEPES/NAOH REMARK 280 PH7.5, 5MM DTT, 5% GLYCEROL, 0.1M NACL MIXED WITH RESERVOIR REMARK 280 CONSISTING OF 0.1M MES/NAOH PH 6.5, 0.2M KI, 25% PEG 4000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.79500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 593 REMARK 465 GLY A 594 REMARK 465 ALA A 595 REMARK 465 VAL A 596 REMARK 465 GLY A 597 REMARK 465 ASP A 598 REMARK 465 GLY A 599 REMARK 465 PRO A 600 REMARK 465 PRO A 601 REMARK 465 LEU A 638 REMARK 465 ASP A 639 REMARK 465 PHE A 640 REMARK 465 PRO A 641 REMARK 465 LEU A 642 REMARK 465 ASN A 643 REMARK 465 VAL A 644 REMARK 465 ARG A 645 REMARK 465 LYS A 646 REMARK 465 GLY A 647 REMARK 465 ASP A 902 REMARK 465 ALA A 903 REMARK 465 LEU A 904 REMARK 465 ASN A 905 REMARK 465 THR A 906 REMARK 465 VAL A 907 REMARK 465 HIS A 908 REMARK 465 HIS A 909 REMARK 465 HIS A 910 REMARK 465 HIS A 911 REMARK 465 HIS A 912 REMARK 465 HIS A 913 REMARK 465 PRO B 593 REMARK 465 GLY B 594 REMARK 465 ALA B 595 REMARK 465 VAL B 596 REMARK 465 GLY B 597 REMARK 465 ASP B 598 REMARK 465 GLY B 599 REMARK 465 PRO B 600 REMARK 465 PRO B 601 REMARK 465 PRO B 641 REMARK 465 LEU B 642 REMARK 465 ASN B 643 REMARK 465 VAL B 644 REMARK 465 ARG B 645 REMARK 465 LYS B 646 REMARK 465 GLY B 647 REMARK 465 LYS B 721 REMARK 465 ALA B 722 REMARK 465 ALA B 723 REMARK 465 GLU B 724 REMARK 465 GLY B 725 REMARK 465 ALA B 726 REMARK 465 PRO B 727 REMARK 465 GLY B 728 REMARK 465 ASP B 729 REMARK 465 THR B 906 REMARK 465 VAL B 907 REMARK 465 HIS B 908 REMARK 465 HIS B 909 REMARK 465 HIS B 910 REMARK 465 HIS B 911 REMARK 465 HIS B 912 REMARK 465 HIS B 913 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 658 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 695 CG OD1 OD2 REMARK 470 ASP B 695 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1121 O HOH A 1162 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 632 40.08 -70.05 REMARK 500 GLN A 633 23.98 -77.53 REMARK 500 ARG A 759 -6.58 85.16 REMARK 500 ASP A 760 42.62 -153.13 REMARK 500 ARG B 759 -8.23 85.69 REMARK 500 ASP B 760 43.33 -155.91 REMARK 500 ARG B 796 -90.06 -120.83 REMARK 500 LEU B 904 22.10 -78.55 REMARK 500 REMARK 500 REMARK: NULL DBREF 5SAY A 593 907 UNP Q08345 DDR1_HUMAN 593 913 DBREF 5SAY B 593 907 UNP Q08345 DDR1_HUMAN 593 913 SEQADV 5SAY A UNP Q08345 GLY 730 DELETION SEQADV 5SAY A UNP Q08345 GLN 731 DELETION SEQADV 5SAY A UNP Q08345 ALA 732 DELETION SEQADV 5SAY A UNP Q08345 ALA 733 DELETION SEQADV 5SAY A UNP Q08345 GLN 734 DELETION SEQADV 5SAY A UNP Q08345 GLY 735 DELETION SEQADV 5SAY HIS A 908 UNP Q08345 EXPRESSION TAG SEQADV 5SAY HIS A 909 UNP Q08345 EXPRESSION TAG SEQADV 5SAY HIS A 910 UNP Q08345 EXPRESSION TAG SEQADV 5SAY HIS A 911 UNP Q08345 EXPRESSION TAG SEQADV 5SAY HIS A 912 UNP Q08345 EXPRESSION TAG SEQADV 5SAY HIS A 913 UNP Q08345 EXPRESSION TAG SEQADV 5SAY B UNP Q08345 GLY 730 DELETION SEQADV 5SAY B UNP Q08345 GLN 731 DELETION SEQADV 5SAY B UNP Q08345 ALA 732 DELETION SEQADV 5SAY B UNP Q08345 ALA 733 DELETION SEQADV 5SAY B UNP Q08345 GLN 734 DELETION SEQADV 5SAY B UNP Q08345 GLY 735 DELETION SEQADV 5SAY HIS B 908 UNP Q08345 EXPRESSION TAG SEQADV 5SAY HIS B 909 UNP Q08345 EXPRESSION TAG SEQADV 5SAY HIS B 910 UNP Q08345 EXPRESSION TAG SEQADV 5SAY HIS B 911 UNP Q08345 EXPRESSION TAG SEQADV 5SAY HIS B 912 UNP Q08345 EXPRESSION TAG SEQADV 5SAY HIS B 913 UNP Q08345 EXPRESSION TAG SEQRES 1 A 321 PRO GLY ALA VAL GLY ASP GLY PRO PRO ARG VAL ASP PHE SEQRES 2 A 321 PRO ARG SER ARG LEU ARG PHE LYS GLU LYS LEU GLY GLU SEQRES 3 A 321 GLY GLN PHE GLY GLU VAL HIS LEU CYS GLU VAL ASP SER SEQRES 4 A 321 PRO GLN ASP LEU VAL SER LEU ASP PHE PRO LEU ASN VAL SEQRES 5 A 321 ARG LYS GLY HIS PRO LEU LEU VAL ALA VAL LYS ILE LEU SEQRES 6 A 321 ARG PRO ASP ALA THR LYS ASN ALA ARG ASN ASP PHE LEU SEQRES 7 A 321 LYS GLU VAL LYS ILE MET SER ARG LEU LYS ASP PRO ASN SEQRES 8 A 321 ILE ILE ARG LEU LEU GLY VAL CYS VAL GLN ASP ASP PRO SEQRES 9 A 321 LEU CYS MET ILE THR ASP TYR MET GLU ASN GLY ASP LEU SEQRES 10 A 321 ASN GLN PHE LEU SER ALA HIS GLN LEU GLU ASP LYS ALA SEQRES 11 A 321 ALA GLU GLY ALA PRO GLY ASP PRO THR ILE SER TYR PRO SEQRES 12 A 321 MET LEU LEU HIS VAL ALA ALA GLN ILE ALA SER GLY MET SEQRES 13 A 321 ARG TYR LEU ALA THR LEU ASN PHE VAL HIS ARG ASP LEU SEQRES 14 A 321 ALA THR ARG ASN CYS LEU VAL GLY GLU ASN PHE THR ILE SEQRES 15 A 321 LYS ILE ALA ASP PHE GLY MET SER ARG ASN LEU TYR ALA SEQRES 16 A 321 GLY ASP TYR TYR ARG VAL GLN GLY ARG ALA VAL LEU PRO SEQRES 17 A 321 ILE ARG TRP MET ALA TRP GLU CYS ILE LEU MET GLY LYS SEQRES 18 A 321 PHE THR THR ALA SER ASP VAL TRP ALA PHE GLY VAL THR SEQRES 19 A 321 LEU TRP GLU VAL LEU MET LEU CYS ARG ALA GLN PRO PHE SEQRES 20 A 321 GLY GLN LEU THR ASP GLU GLN VAL ILE GLU ASN ALA GLY SEQRES 21 A 321 GLU PHE PHE ARG ASP GLN GLY ARG GLN VAL TYR LEU SER SEQRES 22 A 321 ARG PRO PRO ALA CYS PRO GLN GLY LEU TYR GLU LEU MET SEQRES 23 A 321 LEU ARG CYS TRP SER ARG GLU SER GLU GLN ARG PRO PRO SEQRES 24 A 321 PHE SER GLN LEU HIS ARG PHE LEU ALA GLU ASP ALA LEU SEQRES 25 A 321 ASN THR VAL HIS HIS HIS HIS HIS HIS SEQRES 1 B 321 PRO GLY ALA VAL GLY ASP GLY PRO PRO ARG VAL ASP PHE SEQRES 2 B 321 PRO ARG SER ARG LEU ARG PHE LYS GLU LYS LEU GLY GLU SEQRES 3 B 321 GLY GLN PHE GLY GLU VAL HIS LEU CYS GLU VAL ASP SER SEQRES 4 B 321 PRO GLN ASP LEU VAL SER LEU ASP PHE PRO LEU ASN VAL SEQRES 5 B 321 ARG LYS GLY HIS PRO LEU LEU VAL ALA VAL LYS ILE LEU SEQRES 6 B 321 ARG PRO ASP ALA THR LYS ASN ALA ARG ASN ASP PHE LEU SEQRES 7 B 321 LYS GLU VAL LYS ILE MET SER ARG LEU LYS ASP PRO ASN SEQRES 8 B 321 ILE ILE ARG LEU LEU GLY VAL CYS VAL GLN ASP ASP PRO SEQRES 9 B 321 LEU CYS MET ILE THR ASP TYR MET GLU ASN GLY ASP LEU SEQRES 10 B 321 ASN GLN PHE LEU SER ALA HIS GLN LEU GLU ASP LYS ALA SEQRES 11 B 321 ALA GLU GLY ALA PRO GLY ASP PRO THR ILE SER TYR PRO SEQRES 12 B 321 MET LEU LEU HIS VAL ALA ALA GLN ILE ALA SER GLY MET SEQRES 13 B 321 ARG TYR LEU ALA THR LEU ASN PHE VAL HIS ARG ASP LEU SEQRES 14 B 321 ALA THR ARG ASN CYS LEU VAL GLY GLU ASN PHE THR ILE SEQRES 15 B 321 LYS ILE ALA ASP PHE GLY MET SER ARG ASN LEU TYR ALA SEQRES 16 B 321 GLY ASP TYR TYR ARG VAL GLN GLY ARG ALA VAL LEU PRO SEQRES 17 B 321 ILE ARG TRP MET ALA TRP GLU CYS ILE LEU MET GLY LYS SEQRES 18 B 321 PHE THR THR ALA SER ASP VAL TRP ALA PHE GLY VAL THR SEQRES 19 B 321 LEU TRP GLU VAL LEU MET LEU CYS ARG ALA GLN PRO PHE SEQRES 20 B 321 GLY GLN LEU THR ASP GLU GLN VAL ILE GLU ASN ALA GLY SEQRES 21 B 321 GLU PHE PHE ARG ASP GLN GLY ARG GLN VAL TYR LEU SER SEQRES 22 B 321 ARG PRO PRO ALA CYS PRO GLN GLY LEU TYR GLU LEU MET SEQRES 23 B 321 LEU ARG CYS TRP SER ARG GLU SER GLU GLN ARG PRO PRO SEQRES 24 B 321 PHE SER GLN LEU HIS ARG PHE LEU ALA GLU ASP ALA LEU SEQRES 25 B 321 ASN THR VAL HIS HIS HIS HIS HIS HIS HET IOD A1001 1 HET IOD A1002 1 HET IOD A1003 1 HET IOD A1004 1 HET IOD A1005 1 HET IOD A1006 1 HET IOD A1007 1 HET IOD A1008 1 HET 1IJ A1009 30 HET IOD B1001 1 HET IOD B1002 1 HET IOD B1003 1 HET IOD B1004 1 HET IOD B1005 1 HET IOD B1006 1 HET IOD B1007 1 HET 1IJ B1008 30 HETNAM IOD IODIDE ION HETNAM 1IJ N-(2-{3-[(2-AMINOPYRIMIDIN-5-YL)OXY]PHENYL}ETHYL)-3- HETNAM 2 1IJ (TRIFLUOROMETHOXY)BENZAMIDE FORMUL 3 IOD 15(I 1-) FORMUL 11 1IJ 2(C20 H17 F3 N4 O3) FORMUL 20 HOH *180(H2 O) HELIX 1 AA1 PRO A 606 LEU A 610 5 5 HELIX 2 AA2 THR A 662 SER A 677 1 16 HELIX 3 AA3 ASP A 708 ALA A 715 1 8 HELIX 4 AA4 SER A 733 LEU A 754 1 22 HELIX 5 AA5 ALA A 762 ARG A 764 5 3 HELIX 6 AA6 GLU A 770 PHE A 772 5 3 HELIX 7 AA7 ARG A 783 TYR A 790 5 8 HELIX 8 AA8 PRO A 800 MET A 804 5 5 HELIX 9 AA9 ALA A 805 GLY A 812 1 8 HELIX 10 AB1 THR A 815 MET A 832 1 18 HELIX 11 AB2 THR A 843 ASP A 857 1 15 HELIX 12 AB3 PRO A 871 TRP A 882 1 12 HELIX 13 AB4 GLU A 885 ARG A 889 5 5 HELIX 14 AB5 PRO A 891 ALA A 900 1 10 HELIX 15 AB6 PRO B 606 LEU B 610 5 5 HELIX 16 AB7 SER B 631 LEU B 635 5 5 HELIX 17 AB8 THR B 662 LEU B 679 1 18 HELIX 18 AB9 ASP B 708 ALA B 715 1 8 HELIX 19 AC1 SER B 733 LEU B 754 1 22 HELIX 20 AC2 ALA B 762 ARG B 764 5 3 HELIX 21 AC3 GLU B 770 PHE B 772 5 3 HELIX 22 AC4 ARG B 783 TYR B 790 5 8 HELIX 23 AC5 PRO B 800 MET B 804 5 5 HELIX 24 AC6 ALA B 805 GLY B 812 1 8 HELIX 25 AC7 THR B 815 MET B 832 1 18 HELIX 26 AC8 THR B 843 ASP B 857 1 15 HELIX 27 AC9 PRO B 871 TRP B 882 1 12 HELIX 28 AD1 GLU B 885 ARG B 889 5 5 HELIX 29 AD2 PRO B 891 ASP B 902 1 12 SHEET 1 AA1 5 ARG A 611 GLU A 618 0 SHEET 2 AA1 5 GLY A 622 VAL A 629 -1 O VAL A 624 N GLY A 617 SHEET 3 AA1 5 LEU A 650 LEU A 657 -1 O VAL A 654 N HIS A 625 SHEET 4 AA1 5 CYS A 698 ASP A 702 -1 O MET A 699 N LYS A 655 SHEET 5 AA1 5 LEU A 687 CYS A 691 -1 N LEU A 688 O ILE A 700 SHEET 1 AA2 2 GLN A 717 LEU A 718 0 SHEET 2 AA2 2 THR A 731 ILE A 732 1 O ILE A 732 N GLN A 717 SHEET 1 AA3 2 CYS A 766 VAL A 768 0 SHEET 2 AA3 2 ILE A 774 ILE A 776 -1 O LYS A 775 N LEU A 767 SHEET 1 AA4 5 ARG B 611 GLU B 618 0 SHEET 2 AA4 5 GLY B 622 GLU B 628 -1 O VAL B 624 N GLY B 617 SHEET 3 AA4 5 LEU B 651 LEU B 657 -1 O VAL B 652 N CYS B 627 SHEET 4 AA4 5 CYS B 698 ASP B 702 -1 O THR B 701 N ALA B 653 SHEET 5 AA4 5 LEU B 687 CYS B 691 -1 N GLY B 689 O ILE B 700 SHEET 1 AA5 2 GLN B 717 LEU B 718 0 SHEET 2 AA5 2 THR B 731 ILE B 732 1 O ILE B 732 N GLN B 717 SHEET 1 AA6 2 CYS B 766 VAL B 768 0 SHEET 2 AA6 2 ILE B 774 ILE B 776 -1 O LYS B 775 N LEU B 767 SHEET 1 AA7 2 TYR B 791 VAL B 793 0 SHEET 2 AA7 2 ALA B 797 LEU B 799 -1 O ALA B 797 N VAL B 793 CRYST1 45.690 119.590 61.890 90.00 94.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021887 0.000000 0.001884 0.00000 SCALE2 0.000000 0.008362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016217 0.00000