HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-DEC-21 5SCT
TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM MYCOBACTERIUM
TITLE 2 TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR SDDC-783
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: MTDHFR;
COMPND 5 EC: 1.5.1.3;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV;
SOURCE 3 ORGANISM_TAXID: 83332;
SOURCE 4 STRAIN: ATCC 25618 / H37RV;
SOURCE 5 GENE: FOLA, DFRA, RV2763C, MTV002.28C;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS MYCOBACTERIUM TUBERCULOSIS, DHFR, NADP, FOLATE, OXIDOREDUCTASE-
KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX, STRUCTURAL GENOMICS, SEATTLE
KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID
EXPDTA X-RAY DIFFRACTION
AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID)
REVDAT 3 22-MAY-24 5SCT 1 REMARK
REVDAT 2 02-MAR-22 5SCT 1 KEYWDS
REVDAT 1 09-FEB-22 5SCT 0
JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.M.DRANOW,D.G.CONRADY,D.FOX III,
JRNL AUTH 2 C.M.LUKACS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS,J.ABENDROTH
JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM
JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR
JRNL TITL 3 SDDC-783
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 1.55 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX DEV_2196
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.26
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8
REMARK 3 NUMBER OF REFLECTIONS : 21158
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.157
REMARK 3 R VALUE (WORKING SET) : 0.155
REMARK 3 FREE R VALUE : 0.181
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980
REMARK 3 FREE R VALUE TEST SET COUNT : 1053
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 49.2822 - 3.1000 1.00 2713 140 0.1448 0.1675
REMARK 3 2 3.1000 - 2.4606 1.00 2558 136 0.1586 0.1905
REMARK 3 3 2.4606 - 2.1496 1.00 2551 127 0.1587 0.1783
REMARK 3 4 2.1496 - 1.9530 1.00 2512 137 0.1535 0.1799
REMARK 3 5 1.9530 - 1.8130 1.00 2499 129 0.1551 0.1834
REMARK 3 6 1.8130 - 1.7061 0.99 2492 129 0.1624 0.1910
REMARK 3 7 1.7061 - 1.6207 0.98 2441 141 0.1639 0.1933
REMARK 3 8 1.6207 - 1.5501 0.93 2339 114 0.1870 0.2069
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.480
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 20.21
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.65
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.022 1500
REMARK 3 ANGLE : 1.503 2062
REMARK 3 CHIRALITY : 0.099 214
REMARK 3 PLANARITY : 0.008 263
REMARK 3 DIHEDRAL : 28.765 531
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 7
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID -13 THROUGH 9 )
REMARK 3 ORIGIN FOR THE GROUP (A): 16.1311 16.6242 6.8747
REMARK 3 T TENSOR
REMARK 3 T11: 0.0931 T22: 0.1152
REMARK 3 T33: 0.0966 T12: -0.0013
REMARK 3 T13: 0.0043 T23: 0.0215
REMARK 3 L TENSOR
REMARK 3 L11: 0.4245 L22: 1.2390
REMARK 3 L33: 0.0692 L12: 0.4624
REMARK 3 L13: 0.0532 L23: 0.2510
REMARK 3 S TENSOR
REMARK 3 S11: 0.0137 S12: 0.0714 S13: 0.1137
REMARK 3 S21: -0.0803 S22: -0.0287 S23: -0.0440
REMARK 3 S31: -0.1996 S32: 0.1417 S33: 0.0101
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 60 )
REMARK 3 ORIGIN FOR THE GROUP (A): 7.3433 1.1121 13.3115
REMARK 3 T TENSOR
REMARK 3 T11: 0.0509 T22: 0.0917
REMARK 3 T33: 0.0843 T12: -0.0221
REMARK 3 T13: -0.0021 T23: 0.0122
REMARK 3 L TENSOR
REMARK 3 L11: 0.6659 L22: 1.4758
REMARK 3 L33: 1.3839 L12: -0.1803
REMARK 3 L13: 0.0333 L23: 0.3089
REMARK 3 S TENSOR
REMARK 3 S11: 0.0602 S12: -0.0176 S13: -0.0842
REMARK 3 S21: 0.1016 S22: -0.0539 S23: 0.0892
REMARK 3 S31: 0.1167 S32: -0.1167 S33: 0.0007
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 89 )
REMARK 3 ORIGIN FOR THE GROUP (A): 16.2119 -2.4920 0.2204
REMARK 3 T TENSOR
REMARK 3 T11: 0.0986 T22: 0.1253
REMARK 3 T33: 0.1242 T12: 0.0100
REMARK 3 T13: 0.0048 T23: -0.0115
REMARK 3 L TENSOR
REMARK 3 L11: 1.1527 L22: 3.2806
REMARK 3 L33: 1.8928 L12: -0.3702
REMARK 3 L13: -0.2273 L23: -0.4411
REMARK 3 S TENSOR
REMARK 3 S11: 0.0461 S12: 0.1775 S13: -0.0031
REMARK 3 S21: -0.1428 S22: -0.0276 S23: -0.2480
REMARK 3 S31: 0.0919 S32: 0.0135 S33: -0.0356
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 115 )
REMARK 3 ORIGIN FOR THE GROUP (A): 16.4679 8.8448 10.9884
REMARK 3 T TENSOR
REMARK 3 T11: 0.0390 T22: 0.0629
REMARK 3 T33: 0.0620 T12: -0.0026
REMARK 3 T13: -0.0060 T23: 0.0137
REMARK 3 L TENSOR
REMARK 3 L11: 1.2552 L22: 1.3811
REMARK 3 L33: 1.8456 L12: 0.3594
REMARK 3 L13: -0.3558 L23: -0.0132
REMARK 3 S TENSOR
REMARK 3 S11: 0.0870 S12: -0.0165 S13: -0.0198
REMARK 3 S21: -0.0045 S22: -0.0318 S23: -0.1242
REMARK 3 S31: 0.0020 S32: 0.0629 S33: -0.0641
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 125 )
REMARK 3 ORIGIN FOR THE GROUP (A): 16.7941 -0.2110 28.9680
REMARK 3 T TENSOR
REMARK 3 T11: 0.2817 T22: 0.2281
REMARK 3 T33: 0.1824 T12: -0.0017
REMARK 3 T13: -0.0471 T23: 0.0608
REMARK 3 L TENSOR
REMARK 3 L11: 1.2944 L22: 2.1277
REMARK 3 L33: 0.5268 L12: -1.6300
REMARK 3 L13: -0.7537 L23: 0.9150
REMARK 3 S TENSOR
REMARK 3 S11: -0.0187 S12: -0.3218 S13: -0.1932
REMARK 3 S21: 0.4158 S22: -0.0123 S23: -0.1174
REMARK 3 S31: 0.1317 S32: 0.2115 S33: -0.0066
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 139 )
REMARK 3 ORIGIN FOR THE GROUP (A): 20.8773 14.1709 18.1735
REMARK 3 T TENSOR
REMARK 3 T11: 0.0919 T22: 0.1358
REMARK 3 T33: 0.1327 T12: -0.0105
REMARK 3 T13: 0.0040 T23: 0.0043
REMARK 3 L TENSOR
REMARK 3 L11: 1.6056 L22: 1.3068
REMARK 3 L33: 1.6837 L12: 0.8606
REMARK 3 L13: -0.7430 L23: 0.1604
REMARK 3 S TENSOR
REMARK 3 S11: 0.1552 S12: -0.1413 S13: 0.0683
REMARK 3 S21: 0.1398 S22: -0.0359 S23: -0.2764
REMARK 3 S31: -0.1228 S32: 0.0623 S33: -0.1089
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 159 )
REMARK 3 ORIGIN FOR THE GROUP (A): 8.1755 14.1438 23.2659
REMARK 3 T TENSOR
REMARK 3 T11: 0.0819 T22: 0.1264
REMARK 3 T33: 0.0784 T12: -0.0276
REMARK 3 T13: 0.0041 T23: 0.0035
REMARK 3 L TENSOR
REMARK 3 L11: 1.5995 L22: 1.1505
REMARK 3 L33: 1.5356 L12: 0.2372
REMARK 3 L13: -0.7452 L23: 0.0720
REMARK 3 S TENSOR
REMARK 3 S11: 0.2069 S12: -0.1412 S13: 0.2277
REMARK 3 S21: 0.0860 S22: -0.0355 S23: 0.1606
REMARK 3 S31: -0.0435 S32: -0.0425 S33: -0.0767
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5SCT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-22.
REMARK 100 THE DEPOSITION ID IS D_1001404346.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 21-OCT-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : FR-E+ SUPERBRIGHT
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : SATURN 944+
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21159
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : 0.06000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.6200
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59
REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.38500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.480
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 31.31
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS D12: 12.5% PEG1000, 12.5%
REMARK 280 PEG3350, 12.5% MPD, 20MM EACH ALCOHOL (1,6-HEXANEDIOL, 1-BUTANOL,
REMARK 280 (RS)-1,2- PROPANEDIOL, 2-PROPANOL, 1,4-BUTANEDIOL, 1,2-
REMARK 280 PROPANEDIOL), 100MM BICINE/TRIZMA BASE PH8.5, VAPOR DIFFUSION,
REMARK 280 SITTING DROP, TEMPERATURE 289K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.59500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.22500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.58500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.22500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.59500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.58500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER, THE SAME AS ASU
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -19
REMARK 465 GLY A -18
REMARK 465 SER A -17
REMARK 465 SER A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 HIS A -13 CG ND1 CD2 CE1 NE2
REMARK 470 HIS A -10 CG ND1 CD2 CE1 NE2
REMARK 470 SER A -9 OG
REMARK 470 LEU A -6 CG CD1 CD2
REMARK 470 GLU A 133 CG CD OE1 OE2
REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 ND1 HIS A 157 O HOH A 301 1.99
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 32 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO A 21 31.86 -83.64
REMARK 500 LEU A 86 56.45 -96.54
REMARK 500
REMARK 500 REMARK: NULL
DBREF 5SCT A 1 159 UNP P9WNX1 DYR_MYCTU 3 161
SEQADV 5SCT MET A -19 UNP P9WNX1 INITIATING METHIONINE
SEQADV 5SCT GLY A -18 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT SER A -17 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT SER A -16 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT HIS A -15 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT HIS A -14 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT HIS A -13 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT HIS A -12 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT HIS A -11 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT HIS A -10 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT SER A -9 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT SER A -8 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT GLY A -7 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT LEU A -6 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT VAL A -5 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT PRO A -4 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT ARG A -3 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT GLY A -2 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT SER A -1 UNP P9WNX1 EXPRESSION TAG
SEQADV 5SCT HIS A 0 UNP P9WNX1 EXPRESSION TAG
SEQRES 1 A 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 179 LEU VAL PRO ARG GLY SER HIS MET VAL GLY LEU ILE TRP
SEQRES 3 A 179 ALA GLN ALA THR SER GLY VAL ILE GLY ARG GLY GLY ASP
SEQRES 4 A 179 ILE PRO TRP ARG LEU PRO GLU ASP GLN ALA HIS PHE ARG
SEQRES 5 A 179 GLU ILE THR MET GLY HIS THR ILE VAL MET GLY ARG ARG
SEQRES 6 A 179 THR TRP ASP SER LEU PRO ALA LYS VAL ARG PRO LEU PRO
SEQRES 7 A 179 GLY ARG ARG ASN VAL VAL LEU SER ARG GLN ALA ASP PHE
SEQRES 8 A 179 MET ALA SER GLY ALA GLU VAL VAL GLY SER LEU GLU GLU
SEQRES 9 A 179 ALA LEU THR SER PRO GLU THR TRP VAL ILE GLY GLY GLY
SEQRES 10 A 179 GLN VAL TYR ALA LEU ALA LEU PRO TYR ALA THR ARG CYS
SEQRES 11 A 179 GLU VAL THR GLU VAL ASP ILE GLY LEU PRO ARG GLU ALA
SEQRES 12 A 179 GLY ASP ALA LEU ALA PRO VAL LEU ASP GLU THR TRP ARG
SEQRES 13 A 179 GLY GLU THR GLY GLU TRP ARG PHE SER ARG SER GLY LEU
SEQRES 14 A 179 ARG TYR ARG LEU TYR SER TYR HIS ARG SER
HET NAP A 201 48
HET H03 A 202 32
HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
HETNAM H03 3-(2-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL)
HETNAM 2 H03 OXY]PROPOXY}PHENYL)-N-(DIMETHYLSULFAMOYL)PROPANAMIDE
HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
FORMUL 2 NAP C21 H28 N7 O17 P3
FORMUL 3 H03 C20 H30 N6 O5 S
FORMUL 4 HOH *163(H2 O)
HELIX 1 AA1 LEU A 24 MET A 36 1 13
HELIX 2 AA2 ARG A 44 LEU A 50 1 7
HELIX 3 AA3 SER A 81 LEU A 86 1 6
HELIX 4 AA4 GLY A 96 LEU A 104 1 9
HELIX 5 AA5 PRO A 105 ALA A 107 5 3
SHEET 1 AA1 8 GLU A 77 VAL A 79 0
SHEET 2 AA1 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77
SHEET 3 AA1 8 THR A 39 GLY A 43 1 N ILE A 40 O ARG A 61
SHEET 4 AA1 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39
SHEET 5 AA1 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93
SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O THR A 113 N GLN A 8
SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112
SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N ARG A 136 O HIS A 157
SHEET 1 AA2 8 GLU A 77 VAL A 79 0
SHEET 2 AA2 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77
SHEET 3 AA2 8 THR A 39 GLY A 43 1 N ILE A 40 O ARG A 61
SHEET 4 AA2 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39
SHEET 5 AA2 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93
SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O THR A 113 N GLN A 8
SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112
SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151
SHEET 1 AA3 2 VAL A 13 GLY A 15 0
SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14
CISPEP 1 ARG A 55 PRO A 56 0 -0.89
CISPEP 2 GLY A 95 GLY A 96 0 -0.94
CRYST1 29.190 67.170 72.450 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.034258 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014888 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013803 0.00000