HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-DEC-21 5SCV TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR SDDC-889 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MTDHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: FOLA, DFRA, RV2763C, MTV002.28C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MYCOBACTERIUM TUBERCULOSIS, DHFR, NADP, FOLATE, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 02-MAR-22 5SCV 1 KEYWDS REVDAT 1 09-FEB-22 5SCV 0 JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.M.DRANOW,D.G.CONRADY,D.FOX III, JRNL AUTH 2 C.M.LUKACS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS,J.ABENDROTH JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR JRNL TITL 3 SDDC-889 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2196 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 42477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 2049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4001 - 3.8213 1.00 2815 161 0.1344 0.1455 REMARK 3 2 3.8213 - 3.0335 1.00 2797 130 0.1379 0.1739 REMARK 3 3 3.0335 - 2.6501 1.00 2814 119 0.1612 0.1712 REMARK 3 4 2.6501 - 2.4079 1.00 2763 153 0.1666 0.2154 REMARK 3 5 2.4079 - 2.2353 1.00 2762 148 0.1615 0.2089 REMARK 3 6 2.2353 - 2.1035 1.00 2743 140 0.1560 0.1818 REMARK 3 7 2.1035 - 1.9982 1.00 2772 137 0.1620 0.1931 REMARK 3 8 1.9982 - 1.9112 1.00 2747 146 0.1581 0.1981 REMARK 3 9 1.9112 - 1.8377 0.99 2787 127 0.1730 0.2164 REMARK 3 10 1.8377 - 1.7742 0.99 2667 153 0.1790 0.2293 REMARK 3 11 1.7742 - 1.7188 0.96 2649 141 0.1919 0.2647 REMARK 3 12 1.7188 - 1.6696 0.96 2668 111 0.2001 0.2246 REMARK 3 13 1.6696 - 1.6257 0.92 2546 129 0.2011 0.2857 REMARK 3 14 1.6257 - 1.5860 0.93 2523 136 0.2120 0.2512 REMARK 3 15 1.5860 - 1.5500 0.85 2375 118 0.2411 0.2726 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2903 REMARK 3 ANGLE : 1.012 3984 REMARK 3 CHIRALITY : 0.056 422 REMARK 3 PLANARITY : 0.005 501 REMARK 3 DIHEDRAL : 19.179 1660 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -7 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6118 -14.6037 26.0021 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.1217 REMARK 3 T33: 0.1388 T12: 0.0195 REMARK 3 T13: -0.0010 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.6904 L22: 2.1199 REMARK 3 L33: 2.3845 L12: -0.3794 REMARK 3 L13: -0.0579 L23: 0.2397 REMARK 3 S TENSOR REMARK 3 S11: 0.0673 S12: 0.1949 S13: -0.2723 REMARK 3 S21: -0.2090 S22: -0.0235 S23: 0.0316 REMARK 3 S31: 0.5314 S32: 0.0796 S33: -0.0374 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2749 0.4993 23.9763 REMARK 3 T TENSOR REMARK 3 T11: 0.0515 T22: 0.0958 REMARK 3 T33: 0.1203 T12: -0.0169 REMARK 3 T13: 0.0106 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.2842 L22: 0.5872 REMARK 3 L33: 2.0728 L12: -0.3820 REMARK 3 L13: 0.4858 L23: -0.4574 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: 0.1435 S13: 0.0565 REMARK 3 S21: -0.0202 S22: -0.0260 S23: -0.0661 REMARK 3 S31: -0.1167 S32: 0.1293 S33: 0.0342 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9385 -9.9357 35.3630 REMARK 3 T TENSOR REMARK 3 T11: 0.0606 T22: 0.0803 REMARK 3 T33: 0.1114 T12: 0.0059 REMARK 3 T13: 0.0202 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.7720 L22: 0.7889 REMARK 3 L33: 1.7291 L12: -0.0056 REMARK 3 L13: 1.0890 L23: 0.0393 REMARK 3 S TENSOR REMARK 3 S11: 0.0441 S12: -0.0827 S13: -0.1507 REMARK 3 S21: 0.0689 S22: 0.0157 S23: 0.0063 REMARK 3 S31: 0.0402 S32: -0.0430 S33: -0.0611 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -6 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1362 -23.8887 14.7189 REMARK 3 T TENSOR REMARK 3 T11: 0.0887 T22: 0.0886 REMARK 3 T33: 0.1245 T12: -0.0125 REMARK 3 T13: 0.0143 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.0064 L22: 4.0684 REMARK 3 L33: 6.1832 L12: 1.7717 REMARK 3 L13: 2.3283 L23: 4.2541 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: -0.0714 S13: 0.2325 REMARK 3 S21: 0.1747 S22: -0.0976 S23: -0.0010 REMARK 3 S31: -0.0457 S32: -0.0374 S33: 0.0672 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8571 -34.9274 1.4114 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: 0.1377 REMARK 3 T33: 0.1067 T12: 0.0279 REMARK 3 T13: -0.0027 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 3.1943 L22: 0.5478 REMARK 3 L33: 2.0860 L12: 0.0192 REMARK 3 L13: 0.3695 L23: 0.2468 REMARK 3 S TENSOR REMARK 3 S11: 0.1442 S12: 0.2768 S13: -0.2149 REMARK 3 S21: 0.0056 S22: 0.0141 S23: -0.0929 REMARK 3 S31: 0.3195 S32: 0.2854 S33: -0.1103 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9366 -38.1267 14.6094 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.1365 REMARK 3 T33: 0.0587 T12: 0.0061 REMARK 3 T13: -0.0288 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.9435 L22: 5.7536 REMARK 3 L33: 3.9233 L12: 0.7113 REMARK 3 L13: -0.1509 L23: 1.0619 REMARK 3 S TENSOR REMARK 3 S11: 0.0423 S12: 0.1411 S13: 0.0305 REMARK 3 S21: -0.0607 S22: 0.0173 S23: 0.2057 REMARK 3 S31: 0.5748 S32: 0.2023 S33: 0.0098 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4121 -42.2390 17.6841 REMARK 3 T TENSOR REMARK 3 T11: 0.2674 T22: 0.1722 REMARK 3 T33: 0.1339 T12: 0.0546 REMARK 3 T13: 0.0111 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 5.3027 L22: 2.6259 REMARK 3 L33: 2.0819 L12: 1.3741 REMARK 3 L13: -0.6107 L23: -0.5834 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.1410 S13: -0.3424 REMARK 3 S21: -0.3219 S22: 0.0058 S23: -0.2533 REMARK 3 S31: 0.6938 S32: 0.2327 S33: 0.0126 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8437 -33.0959 24.7332 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.1566 REMARK 3 T33: 0.1770 T12: -0.0022 REMARK 3 T13: -0.0202 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 3.2746 L22: 3.0112 REMARK 3 L33: 1.6327 L12: 3.1180 REMARK 3 L13: -0.4685 L23: -0.6982 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: -0.1081 S13: 0.3260 REMARK 3 S21: 0.1528 S22: 0.1828 S23: 0.4916 REMARK 3 S31: -0.1243 S32: -0.0728 S33: -0.1898 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8273 -30.6526 15.1840 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.1202 REMARK 3 T33: 0.0611 T12: -0.0016 REMARK 3 T13: -0.0043 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 3.1392 L22: 6.6427 REMARK 3 L33: 4.9355 L12: 0.0589 REMARK 3 L13: -0.8967 L23: 0.4546 REMARK 3 S TENSOR REMARK 3 S11: 0.1268 S12: -0.2381 S13: 0.0841 REMARK 3 S21: 0.0852 S22: -0.0147 S23: 0.0321 REMARK 3 S31: -0.0890 S32: -0.3195 S33: -0.0559 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9156 -24.9048 5.8043 REMARK 3 T TENSOR REMARK 3 T11: 0.0514 T22: 0.0716 REMARK 3 T33: 0.1005 T12: -0.0022 REMARK 3 T13: 0.0032 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.8201 L22: 6.6280 REMARK 3 L33: 7.5849 L12: -0.7296 REMARK 3 L13: -1.0325 L23: 5.6875 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.0389 S13: 0.1791 REMARK 3 S21: -0.0696 S22: -0.0048 S23: 0.0147 REMARK 3 S31: -0.3437 S32: -0.1028 S33: 0.0260 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4742 -30.0027 2.2858 REMARK 3 T TENSOR REMARK 3 T11: 0.0883 T22: 0.1249 REMARK 3 T33: 0.1277 T12: -0.0008 REMARK 3 T13: -0.0125 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.8504 L22: 0.1106 REMARK 3 L33: 4.0520 L12: 0.1598 REMARK 3 L13: -0.8601 L23: -0.5463 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: -0.0011 S13: 0.1321 REMARK 3 S21: -0.2003 S22: 0.0567 S23: 0.0592 REMARK 3 S31: 0.0154 S32: -0.3865 S33: -0.0599 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5044 -27.5141 -9.8997 REMARK 3 T TENSOR REMARK 3 T11: 0.1040 T22: 0.1580 REMARK 3 T33: 0.1029 T12: 0.0023 REMARK 3 T13: 0.0225 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 2.6329 L22: 9.3345 REMARK 3 L33: 7.2398 L12: -4.8921 REMARK 3 L13: -1.7740 L23: 4.2966 REMARK 3 S TENSOR REMARK 3 S11: 0.1519 S12: 0.1554 S13: 0.0828 REMARK 3 S21: -0.1024 S22: -0.0055 S23: -0.1799 REMARK 3 S31: -0.3370 S32: 0.2101 S33: -0.1005 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6836 -21.0665 4.4717 REMARK 3 T TENSOR REMARK 3 T11: 0.2017 T22: 0.1135 REMARK 3 T33: 0.1647 T12: 0.0299 REMARK 3 T13: 0.0194 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 6.5644 L22: 3.3626 REMARK 3 L33: 5.5280 L12: -3.2870 REMARK 3 L13: -5.1754 L23: 3.9419 REMARK 3 S TENSOR REMARK 3 S11: 0.0564 S12: -0.1662 S13: 0.4316 REMARK 3 S21: 0.0067 S22: 0.0446 S23: 0.0648 REMARK 3 S31: -0.4874 S32: -0.0339 S33: -0.1177 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1001404348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING COPPER ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : FRE+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42503 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 F3 (267577F3): 20%PEG3350, 200MM REMARK 280 AMMONIUM CITRATE DIBASIC PH5.0, 3.5MM EBSI5603, PROTEIN REMARK 280 CONCENTRATION 40.69MG/ML, CRYO 20% EG, PUCK IRI2-1, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.71000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -11 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A -10 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 ARG B 136 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 ARG B 143 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 146 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A -12 C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 433 O HOH B 443 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -11 97.16 -56.95 REMARK 500 HIS A -10 79.61 -55.45 REMARK 500 PRO A 21 34.69 -84.75 REMARK 500 PRO B 21 40.59 -86.48 REMARK 500 ASP B 132 -158.84 -95.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 5SCV A 1 159 UNP P9WNX1 DYR_MYCTU 3 161 DBREF 5SCV B 1 159 UNP P9WNX1 DYR_MYCTU 3 161 SEQADV 5SCV MET A -19 UNP P9WNX1 INITIATING METHIONINE SEQADV 5SCV GLY A -18 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV SER A -17 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV SER A -16 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS A -15 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS A -14 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS A -13 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS A -12 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS A -11 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS A -10 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV SER A -9 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV SER A -8 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV GLY A -7 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV LEU A -6 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV VAL A -5 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV PRO A -4 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV ARG A -3 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV GLY A -2 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV SER A -1 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS A 0 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV MET B -19 UNP P9WNX1 INITIATING METHIONINE SEQADV 5SCV GLY B -18 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV SER B -17 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV SER B -16 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS B -15 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS B -14 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS B -13 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS B -12 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS B -11 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS B -10 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV SER B -9 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV SER B -8 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV GLY B -7 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV LEU B -6 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV VAL B -5 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV PRO B -4 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV ARG B -3 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV GLY B -2 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV SER B -1 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCV HIS B 0 UNP P9WNX1 EXPRESSION TAG SEQRES 1 A 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 179 LEU VAL PRO ARG GLY SER HIS MET VAL GLY LEU ILE TRP SEQRES 3 A 179 ALA GLN ALA THR SER GLY VAL ILE GLY ARG GLY GLY ASP SEQRES 4 A 179 ILE PRO TRP ARG LEU PRO GLU ASP GLN ALA HIS PHE ARG SEQRES 5 A 179 GLU ILE THR MET GLY HIS THR ILE VAL MET GLY ARG ARG SEQRES 6 A 179 THR TRP ASP SER LEU PRO ALA LYS VAL ARG PRO LEU PRO SEQRES 7 A 179 GLY ARG ARG ASN VAL VAL LEU SER ARG GLN ALA ASP PHE SEQRES 8 A 179 MET ALA SER GLY ALA GLU VAL VAL GLY SER LEU GLU GLU SEQRES 9 A 179 ALA LEU THR SER PRO GLU THR TRP VAL ILE GLY GLY GLY SEQRES 10 A 179 GLN VAL TYR ALA LEU ALA LEU PRO TYR ALA THR ARG CYS SEQRES 11 A 179 GLU VAL THR GLU VAL ASP ILE GLY LEU PRO ARG GLU ALA SEQRES 12 A 179 GLY ASP ALA LEU ALA PRO VAL LEU ASP GLU THR TRP ARG SEQRES 13 A 179 GLY GLU THR GLY GLU TRP ARG PHE SER ARG SER GLY LEU SEQRES 14 A 179 ARG TYR ARG LEU TYR SER TYR HIS ARG SER SEQRES 1 B 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 179 LEU VAL PRO ARG GLY SER HIS MET VAL GLY LEU ILE TRP SEQRES 3 B 179 ALA GLN ALA THR SER GLY VAL ILE GLY ARG GLY GLY ASP SEQRES 4 B 179 ILE PRO TRP ARG LEU PRO GLU ASP GLN ALA HIS PHE ARG SEQRES 5 B 179 GLU ILE THR MET GLY HIS THR ILE VAL MET GLY ARG ARG SEQRES 6 B 179 THR TRP ASP SER LEU PRO ALA LYS VAL ARG PRO LEU PRO SEQRES 7 B 179 GLY ARG ARG ASN VAL VAL LEU SER ARG GLN ALA ASP PHE SEQRES 8 B 179 MET ALA SER GLY ALA GLU VAL VAL GLY SER LEU GLU GLU SEQRES 9 B 179 ALA LEU THR SER PRO GLU THR TRP VAL ILE GLY GLY GLY SEQRES 10 B 179 GLN VAL TYR ALA LEU ALA LEU PRO TYR ALA THR ARG CYS SEQRES 11 B 179 GLU VAL THR GLU VAL ASP ILE GLY LEU PRO ARG GLU ALA SEQRES 12 B 179 GLY ASP ALA LEU ALA PRO VAL LEU ASP GLU THR TRP ARG SEQRES 13 B 179 GLY GLU THR GLY GLU TRP ARG PHE SER ARG SER GLY LEU SEQRES 14 B 179 ARG TYR ARG LEU TYR SER TYR HIS ARG SER HET NAP A 201 48 HET H4U A 202 30 HET CL A 203 1 HET NAP B 201 48 HET H4U B 202 30 HET CL B 203 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM H4U 6-ETHYL-5-(4-{3-[3-(1H-TETRAZOL-5-YL) HETNAM 2 H4U PROPYL]PHENOXY}BUTOXY)PYRIMIDINE-2,4-DIAMINE HETNAM CL CHLORIDE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 H4U 2(C20 H28 N8 O2) FORMUL 5 CL 2(CL 1-) FORMUL 9 HOH *320(H2 O) HELIX 1 AA1 LEU A 24 MET A 36 1 13 HELIX 2 AA2 ARG A 44 LEU A 50 1 7 HELIX 3 AA3 PRO A 51 ARG A 55 5 5 HELIX 4 AA4 SER A 81 LEU A 86 1 6 HELIX 5 AA5 GLY A 96 LEU A 104 1 9 HELIX 6 AA6 PRO A 105 ALA A 107 5 3 HELIX 7 AA7 LEU B 24 MET B 36 1 13 HELIX 8 AA8 ARG B 44 LEU B 50 1 7 HELIX 9 AA9 PRO B 51 ARG B 55 5 5 HELIX 10 AB1 SER B 81 LEU B 86 5 6 HELIX 11 AB2 GLY B 96 LEU B 104 1 9 HELIX 12 AB3 PRO B 105 ALA B 107 5 3 SHEET 1 AA1 8 GLU A 77 VAL A 79 0 SHEET 2 AA1 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA1 8 THR A 39 GLY A 43 1 N MET A 42 O LEU A 65 SHEET 4 AA1 8 GLU A 90 VAL A 93 1 O TRP A 92 N VAL A 41 SHEET 5 AA1 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N ARG A 136 O HIS A 157 SHEET 1 AA2 8 GLU A 77 VAL A 79 0 SHEET 2 AA2 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA2 8 THR A 39 GLY A 43 1 N MET A 42 O LEU A 65 SHEET 4 AA2 8 GLU A 90 VAL A 93 1 O TRP A 92 N VAL A 41 SHEET 5 AA2 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14 SHEET 1 AA4 8 GLU B 77 VAL B 79 0 SHEET 2 AA4 8 ARG B 61 LEU B 65 1 N VAL B 64 O GLU B 77 SHEET 3 AA4 8 THR B 39 GLY B 43 1 N MET B 42 O LEU B 65 SHEET 4 AA4 8 GLU B 90 VAL B 93 1 O TRP B 92 N THR B 39 SHEET 5 AA4 8 MET B 1 ALA B 9 1 N GLY B 3 O VAL B 93 SHEET 6 AA4 8 ARG B 109 VAL B 115 1 O VAL B 115 N GLN B 8 SHEET 7 AA4 8 ARG B 150 ARG B 158 -1 O TYR B 156 N CYS B 110 SHEET 8 AA4 8 TRP B 135 THR B 139 -1 N ARG B 136 O HIS B 157 SHEET 1 AA5 8 GLU B 77 VAL B 79 0 SHEET 2 AA5 8 ARG B 61 LEU B 65 1 N VAL B 64 O GLU B 77 SHEET 3 AA5 8 THR B 39 GLY B 43 1 N MET B 42 O LEU B 65 SHEET 4 AA5 8 GLU B 90 VAL B 93 1 O TRP B 92 N THR B 39 SHEET 5 AA5 8 MET B 1 ALA B 9 1 N GLY B 3 O VAL B 93 SHEET 6 AA5 8 ARG B 109 VAL B 115 1 O VAL B 115 N GLN B 8 SHEET 7 AA5 8 ARG B 150 ARG B 158 -1 O TYR B 156 N CYS B 110 SHEET 8 AA5 8 ARG B 143 PHE B 144 -1 N ARG B 143 O TYR B 151 SHEET 1 AA6 2 VAL B 13 GLY B 15 0 SHEET 2 AA6 2 ALA B 126 LEU B 127 -1 O ALA B 126 N ILE B 14 CISPEP 1 ARG A 55 PRO A 56 0 0.37 CISPEP 2 GLY A 95 GLY A 96 0 -0.12 CISPEP 3 ARG B 55 PRO B 56 0 4.91 CISPEP 4 GLY B 95 GLY B 96 0 -2.51 CRYST1 30.260 67.420 75.250 90.00 96.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033047 0.000000 0.003717 0.00000 SCALE2 0.000000 0.014832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013373 0.00000