HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-DEC-21 5SCZ TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR SDDC-1224 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MTDHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: FOLA, DFRA, RV2763C, MTV002.28C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MYCOBACTERIUM TUBERCULOSIS, DHFR, NADP, FOLATE, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 22-MAY-24 5SCZ 1 REMARK REVDAT 2 02-MAR-22 5SCZ 1 KEYWDS REVDAT 1 09-FEB-22 5SCZ 0 JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.M.DRANOW,D.G.CONRADY,D.FOX III, JRNL AUTH 2 C.M.LUKACS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS,J.ABENDROTH JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR JRNL TITL 3 SDDC-1224 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2744 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 14985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.340 REMARK 3 FREE R VALUE TEST SET COUNT : 1400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2587 - 3.7700 1.00 1486 150 0.1262 0.1597 REMARK 3 2 3.7700 - 2.9924 1.00 1390 149 0.1221 0.1708 REMARK 3 3 2.9924 - 2.6142 1.00 1351 173 0.1435 0.1814 REMARK 3 4 2.6142 - 2.3752 1.00 1368 143 0.1479 0.2053 REMARK 3 5 2.3752 - 2.2050 1.00 1376 121 0.1566 0.2226 REMARK 3 6 2.2050 - 2.0750 0.99 1357 118 0.1519 0.1979 REMARK 3 7 2.0750 - 1.9710 1.00 1322 147 0.1566 0.1882 REMARK 3 8 1.9710 - 1.8852 1.00 1358 144 0.1707 0.2810 REMARK 3 9 1.8852 - 1.8127 0.98 1332 123 0.2031 0.3017 REMARK 3 10 1.8127 - 1.7501 0.94 1245 132 0.2187 0.2559 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1460 REMARK 3 ANGLE : 0.879 1995 REMARK 3 CHIRALITY : 0.052 209 REMARK 3 PLANARITY : 0.006 274 REMARK 3 DIHEDRAL : 19.882 872 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -6 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4859 12.8034 6.7045 REMARK 3 T TENSOR REMARK 3 T11: 0.0855 T22: 0.0907 REMARK 3 T33: 0.0921 T12: 0.0251 REMARK 3 T13: -0.0052 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.3360 L22: 3.0238 REMARK 3 L33: 3.2770 L12: 0.1873 REMARK 3 L13: 0.3435 L23: -2.4113 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: 0.0393 S13: 0.0739 REMARK 3 S21: -0.1506 S22: -0.0034 S23: 0.0809 REMARK 3 S31: -0.1024 S32: 0.1301 S33: -0.0376 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0468 -0.3536 23.3056 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.0866 REMARK 3 T33: 0.1172 T12: -0.0096 REMARK 3 T13: -0.0156 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.2352 L22: 0.9882 REMARK 3 L33: 0.9891 L12: -0.1028 REMARK 3 L13: -0.2295 L23: 0.5772 REMARK 3 S TENSOR REMARK 3 S11: 0.1768 S12: -0.0713 S13: -0.0621 REMARK 3 S21: 0.2084 S22: -0.0957 S23: -0.0501 REMARK 3 S31: 0.1573 S32: -0.0218 S33: -0.0047 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5458 7.9124 14.4854 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.1373 REMARK 3 T33: 0.1290 T12: -0.0106 REMARK 3 T13: -0.0061 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3381 L22: 2.0783 REMARK 3 L33: 2.3716 L12: -0.3987 REMARK 3 L13: 0.1393 L23: -0.9386 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: 0.0800 S13: -0.0747 REMARK 3 S21: -0.0410 S22: 0.0801 S23: 0.1111 REMARK 3 S31: 0.1090 S32: -0.5933 S33: -0.2519 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5824 -3.9059 5.0273 REMARK 3 T TENSOR REMARK 3 T11: 0.0698 T22: 0.0955 REMARK 3 T33: 0.0787 T12: -0.0081 REMARK 3 T13: -0.0030 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.9188 L22: 2.2499 REMARK 3 L33: 1.7460 L12: -0.2289 REMARK 3 L13: 0.0544 L23: -0.0455 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: 0.0521 S13: -0.0966 REMARK 3 S21: -0.0426 S22: -0.0081 S23: 0.0617 REMARK 3 S31: 0.0924 S32: -0.0772 S33: -0.0297 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3608 2.7649 -1.5166 REMARK 3 T TENSOR REMARK 3 T11: 0.1441 T22: 0.1523 REMARK 3 T33: 0.1631 T12: -0.0066 REMARK 3 T13: 0.0162 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.3735 L22: 5.3122 REMARK 3 L33: 1.6137 L12: -0.8387 REMARK 3 L13: -0.4095 L23: -1.0273 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: -0.0869 S13: 0.1111 REMARK 3 S21: -0.3204 S22: 0.1567 S23: -0.3201 REMARK 3 S31: -0.0788 S32: 0.0593 S33: 0.0316 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5673 6.2609 8.8095 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.0756 REMARK 3 T33: 0.0854 T12: 0.0045 REMARK 3 T13: -0.0038 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.3447 L22: 2.8107 REMARK 3 L33: 3.1163 L12: 0.4724 REMARK 3 L13: -0.3690 L23: -0.8354 REMARK 3 S TENSOR REMARK 3 S11: 0.0989 S12: -0.0170 S13: 0.0195 REMARK 3 S21: -0.1073 S22: -0.0356 S23: -0.0949 REMARK 3 S31: -0.0871 S32: 0.0454 S33: 0.0270 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6690 6.1650 23.0169 REMARK 3 T TENSOR REMARK 3 T11: 0.1193 T22: 0.0983 REMARK 3 T33: 0.1282 T12: -0.0060 REMARK 3 T13: -0.0285 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.9451 L22: 1.1075 REMARK 3 L33: 1.3643 L12: 0.0187 REMARK 3 L13: -0.2896 L23: 1.1428 REMARK 3 S TENSOR REMARK 3 S11: 0.0268 S12: -0.1495 S13: -0.0865 REMARK 3 S21: 0.3000 S22: -0.0146 S23: -0.1327 REMARK 3 S31: 0.0841 S32: 0.0992 S33: 0.1571 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3834 14.7369 18.1391 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.1398 REMARK 3 T33: 0.1478 T12: -0.0226 REMARK 3 T13: -0.0210 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 0.4766 L22: 2.5380 REMARK 3 L33: 2.5685 L12: 0.1677 REMARK 3 L13: -0.8129 L23: -1.1635 REMARK 3 S TENSOR REMARK 3 S11: 0.1397 S12: -0.2047 S13: 0.0604 REMARK 3 S21: -0.0183 S22: -0.0377 S23: -0.2642 REMARK 3 S31: -0.0954 S32: 0.1887 S33: 0.1491 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8588 14.3068 23.2548 REMARK 3 T TENSOR REMARK 3 T11: 0.0995 T22: 0.1080 REMARK 3 T33: 0.0831 T12: -0.0223 REMARK 3 T13: -0.0084 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.7138 L22: 1.4915 REMARK 3 L33: 1.3942 L12: -0.3428 REMARK 3 L13: -0.3478 L23: 0.0615 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: -0.0653 S13: 0.1632 REMARK 3 S21: -0.0220 S22: 0.0196 S23: 0.0550 REMARK 3 S31: 0.0280 S32: -0.0616 S33: -0.0319 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1001404352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PAD REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15004 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG4 F7 (291329F7): 200MM MAGNESIUM REMARK 280 FORMATE, 100MM MES:NAOH PH6.5, 25% (W/V) PEG4000, 10MG/ML REMARK 280 PROTEIN CONC., CRYO 15% ETHYLENE GLYCOL, PUCK PWP0-16, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.75000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.16500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.16500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.75000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER, THE SAME AS ASU REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -6 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 83 O HOH A 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 308 O HOH A 457 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 30.68 -83.54 REMARK 500 LEU A 86 55.91 -107.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 111 O REMARK 620 2 THR A 113 OG1 141.6 REMARK 620 N 1 DBREF 5SCZ A 1 159 UNP P9WNX1 DYR_MYCTU 3 161 SEQADV 5SCZ MET A -19 UNP P9WNX1 INITIATING METHIONINE SEQADV 5SCZ GLY A -18 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ SER A -17 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ SER A -16 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ HIS A -15 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ HIS A -14 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ HIS A -13 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ HIS A -12 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ HIS A -11 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ HIS A -10 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ SER A -9 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ SER A -8 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ GLY A -7 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ LEU A -6 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ VAL A -5 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ PRO A -4 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ ARG A -3 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ GLY A -2 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ SER A -1 UNP P9WNX1 EXPRESSION TAG SEQADV 5SCZ HIS A 0 UNP P9WNX1 EXPRESSION TAG SEQRES 1 A 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 179 LEU VAL PRO ARG GLY SER HIS MET VAL GLY LEU ILE TRP SEQRES 3 A 179 ALA GLN ALA THR SER GLY VAL ILE GLY ARG GLY GLY ASP SEQRES 4 A 179 ILE PRO TRP ARG LEU PRO GLU ASP GLN ALA HIS PHE ARG SEQRES 5 A 179 GLU ILE THR MET GLY HIS THR ILE VAL MET GLY ARG ARG SEQRES 6 A 179 THR TRP ASP SER LEU PRO ALA LYS VAL ARG PRO LEU PRO SEQRES 7 A 179 GLY ARG ARG ASN VAL VAL LEU SER ARG GLN ALA ASP PHE SEQRES 8 A 179 MET ALA SER GLY ALA GLU VAL VAL GLY SER LEU GLU GLU SEQRES 9 A 179 ALA LEU THR SER PRO GLU THR TRP VAL ILE GLY GLY GLY SEQRES 10 A 179 GLN VAL TYR ALA LEU ALA LEU PRO TYR ALA THR ARG CYS SEQRES 11 A 179 GLU VAL THR GLU VAL ASP ILE GLY LEU PRO ARG GLU ALA SEQRES 12 A 179 GLY ASP ALA LEU ALA PRO VAL LEU ASP GLU THR TRP ARG SEQRES 13 A 179 GLY GLU THR GLY GLU TRP ARG PHE SER ARG SER GLY LEU SEQRES 14 A 179 ARG TYR ARG LEU TYR SER TYR HIS ARG SER HET NAP A 201 48 HET HI9 A 202 25 HET NA A 203 1 HET CL A 204 1 HET EDO A 205 4 HET EDO A 206 4 HET FMT A 207 3 HET FMT A 208 3 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM HI9 (2E)-3-(2-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 HI9 OXY]PROPOXY}PYRIDIN-3-YL)PROP-2-EN-1-OL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HI9 C17 H23 N5 O3 FORMUL 4 NA NA 1+ FORMUL 5 CL CL 1- FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 FMT 2(C H2 O2) FORMUL 10 HOH *212(H2 O) HELIX 1 AA1 LEU A 24 MET A 36 1 13 HELIX 2 AA2 ARG A 44 LEU A 50 1 7 HELIX 3 AA3 PRO A 51 ARG A 55 5 5 HELIX 4 AA4 SER A 81 LEU A 86 1 6 HELIX 5 AA5 GLY A 96 LEU A 104 1 9 HELIX 6 AA6 PRO A 105 ALA A 107 5 3 SHEET 1 AA1 8 GLU A 77 VAL A 79 0 SHEET 2 AA1 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA1 8 THR A 39 GLY A 43 1 N ILE A 40 O ARG A 61 SHEET 4 AA1 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA1 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O THR A 113 N GLN A 8 SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O ARG A 152 N GLU A 114 SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N GLU A 138 O SER A 155 SHEET 1 AA2 8 GLU A 77 VAL A 79 0 SHEET 2 AA2 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA2 8 THR A 39 GLY A 43 1 N ILE A 40 O ARG A 61 SHEET 4 AA2 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA2 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O THR A 113 N GLN A 8 SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O ARG A 152 N GLU A 114 SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14 LINK O GLU A 111 NA NA A 203 1555 1555 3.16 LINK OG1 THR A 113 NA NA A 203 1555 1555 2.87 CISPEP 1 ARG A 55 PRO A 56 0 0.64 CISPEP 2 GLY A 95 GLY A 96 0 -1.34 CRYST1 29.500 67.220 72.330 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013826 0.00000