data_5SD0 # _entry.id 5SD0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5SD0 pdb_00005sd0 10.2210/pdb5sd0/pdb WWPDB D_1001404353 ? ? # _pdbx_database_status.entry_id 5SD0 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2021-12-20 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.id primary _citation.journal_abbrev 'to be published' _citation.title 'Crystal Structure of Dihydrofolate Reductase from Mycobacterium tuberculosis bound to NADP and SDDC Inhibitor SDDC-1225' _citation.year ? _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mayclin, S.J.' 1 ? primary 'Fairman, J.W.' 2 ? primary 'Dranow, D.M.' 3 ? primary 'Conrady, D.G.' 4 ? primary 'Fox III, D.' 5 ? primary 'Lukacs, C.M.' 6 ? primary 'Lorimer, D.D.' 7 ? primary 'Horanyi, P.S.' 8 ? primary 'Edwards, T.E.' 9 ? primary 'Abendroth, J.' 10 ? # _cell.entry_id 5SD0 _cell.length_a 29.480 _cell.length_b 67.130 _cell.length_c 72.140 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SD0 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dihydrofolate reductase' 19832.365 1 1.5.1.3 ? MtDHFR ? 2 non-polymer syn 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 743.405 1 ? ? ? ? 3 non-polymer syn '3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}pyridin-3-yl)propan-1-ol' 347.412 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 6 non-polymer syn 'FORMIC ACID' 46.025 1 ? ? ? ? 7 water nat water 18.015 184 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMVGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGR RNVVLSRQADFMASGAEVVGSLEEALTSPETWVIGGGQVYALALPYATRCEVTEVDIGLPREAGDALAPVLDETWRGETG EWRFSRSGLRYRLYSYHRS ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMVGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGR RNVVLSRQADFMASGAEVVGSLEEALTSPETWVIGGGQVYALALPYATRCEVTEVDIGLPREAGDALAPVLDETWRGETG EWRFSRSGLRYRLYSYHRS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 VAL n 1 23 GLY n 1 24 LEU n 1 25 ILE n 1 26 TRP n 1 27 ALA n 1 28 GLN n 1 29 ALA n 1 30 THR n 1 31 SER n 1 32 GLY n 1 33 VAL n 1 34 ILE n 1 35 GLY n 1 36 ARG n 1 37 GLY n 1 38 GLY n 1 39 ASP n 1 40 ILE n 1 41 PRO n 1 42 TRP n 1 43 ARG n 1 44 LEU n 1 45 PRO n 1 46 GLU n 1 47 ASP n 1 48 GLN n 1 49 ALA n 1 50 HIS n 1 51 PHE n 1 52 ARG n 1 53 GLU n 1 54 ILE n 1 55 THR n 1 56 MET n 1 57 GLY n 1 58 HIS n 1 59 THR n 1 60 ILE n 1 61 VAL n 1 62 MET n 1 63 GLY n 1 64 ARG n 1 65 ARG n 1 66 THR n 1 67 TRP n 1 68 ASP n 1 69 SER n 1 70 LEU n 1 71 PRO n 1 72 ALA n 1 73 LYS n 1 74 VAL n 1 75 ARG n 1 76 PRO n 1 77 LEU n 1 78 PRO n 1 79 GLY n 1 80 ARG n 1 81 ARG n 1 82 ASN n 1 83 VAL n 1 84 VAL n 1 85 LEU n 1 86 SER n 1 87 ARG n 1 88 GLN n 1 89 ALA n 1 90 ASP n 1 91 PHE n 1 92 MET n 1 93 ALA n 1 94 SER n 1 95 GLY n 1 96 ALA n 1 97 GLU n 1 98 VAL n 1 99 VAL n 1 100 GLY n 1 101 SER n 1 102 LEU n 1 103 GLU n 1 104 GLU n 1 105 ALA n 1 106 LEU n 1 107 THR n 1 108 SER n 1 109 PRO n 1 110 GLU n 1 111 THR n 1 112 TRP n 1 113 VAL n 1 114 ILE n 1 115 GLY n 1 116 GLY n 1 117 GLY n 1 118 GLN n 1 119 VAL n 1 120 TYR n 1 121 ALA n 1 122 LEU n 1 123 ALA n 1 124 LEU n 1 125 PRO n 1 126 TYR n 1 127 ALA n 1 128 THR n 1 129 ARG n 1 130 CYS n 1 131 GLU n 1 132 VAL n 1 133 THR n 1 134 GLU n 1 135 VAL n 1 136 ASP n 1 137 ILE n 1 138 GLY n 1 139 LEU n 1 140 PRO n 1 141 ARG n 1 142 GLU n 1 143 ALA n 1 144 GLY n 1 145 ASP n 1 146 ALA n 1 147 LEU n 1 148 ALA n 1 149 PRO n 1 150 VAL n 1 151 LEU n 1 152 ASP n 1 153 GLU n 1 154 THR n 1 155 TRP n 1 156 ARG n 1 157 GLY n 1 158 GLU n 1 159 THR n 1 160 GLY n 1 161 GLU n 1 162 TRP n 1 163 ARG n 1 164 PHE n 1 165 SER n 1 166 ARG n 1 167 SER n 1 168 GLY n 1 169 LEU n 1 170 ARG n 1 171 TYR n 1 172 ARG n 1 173 LEU n 1 174 TYR n 1 175 SER n 1 176 TYR n 1 177 HIS n 1 178 ARG n 1 179 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 179 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'folA, dfrA, Rv2763c, MTV002.28c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 25618 / H37Rv' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis H37Rv' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83332 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DYR_MYCTU _struct_ref.pdbx_db_accession P9WNX1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADFMASGAEVVG SLEEALTSPETWVIGGGQVYALALPYATRCEVTEVDIGLPREAGDALAPVLDETWRGETGEWRFSRSGLRYRLYSYHRS ; _struct_ref.pdbx_align_begin 3 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5SD0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 21 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 179 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P9WNX1 _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 161 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5SD0 MET A 1 ? UNP P9WNX1 ? ? 'initiating methionine' -19 1 1 5SD0 GLY A 2 ? UNP P9WNX1 ? ? 'expression tag' -18 2 1 5SD0 SER A 3 ? UNP P9WNX1 ? ? 'expression tag' -17 3 1 5SD0 SER A 4 ? UNP P9WNX1 ? ? 'expression tag' -16 4 1 5SD0 HIS A 5 ? UNP P9WNX1 ? ? 'expression tag' -15 5 1 5SD0 HIS A 6 ? UNP P9WNX1 ? ? 'expression tag' -14 6 1 5SD0 HIS A 7 ? UNP P9WNX1 ? ? 'expression tag' -13 7 1 5SD0 HIS A 8 ? UNP P9WNX1 ? ? 'expression tag' -12 8 1 5SD0 HIS A 9 ? UNP P9WNX1 ? ? 'expression tag' -11 9 1 5SD0 HIS A 10 ? UNP P9WNX1 ? ? 'expression tag' -10 10 1 5SD0 SER A 11 ? UNP P9WNX1 ? ? 'expression tag' -9 11 1 5SD0 SER A 12 ? UNP P9WNX1 ? ? 'expression tag' -8 12 1 5SD0 GLY A 13 ? UNP P9WNX1 ? ? 'expression tag' -7 13 1 5SD0 LEU A 14 ? UNP P9WNX1 ? ? 'expression tag' -6 14 1 5SD0 VAL A 15 ? UNP P9WNX1 ? ? 'expression tag' -5 15 1 5SD0 PRO A 16 ? UNP P9WNX1 ? ? 'expression tag' -4 16 1 5SD0 ARG A 17 ? UNP P9WNX1 ? ? 'expression tag' -3 17 1 5SD0 GLY A 18 ? UNP P9WNX1 ? ? 'expression tag' -2 18 1 5SD0 SER A 19 ? UNP P9WNX1 ? ? 'expression tag' -1 19 1 5SD0 HIS A 20 ? UNP P9WNX1 ? ? 'expression tag' 0 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIK non-polymer . '3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}pyridin-3-yl)propan-1-ol' ? 'C17 H25 N5 O3' 347.412 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAP non-polymer . 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' ;2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE ; 'C21 H28 N7 O17 P3' 743.405 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 5SD0 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 32 _exptl_crystal.density_Matthews 1.8 _exptl_crystal.pdbx_mosaicity 0.173 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH . _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details ;MCSG4 F7 (291338f7): 200mM magnesium formate, 100mM MES:NaOH pH6.5, 25% (w/v) PEG4000, 10mg/mL protein conc., cryo 15% ethylene glycol, puck pwp0-15 ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PAD _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2017-05-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'SI 111' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CLSI BEAMLINE 08ID-1' _diffrn_source.pdbx_wavelength_list 0.97949 _diffrn_source.pdbx_synchrotron_site CLSI _diffrn_source.pdbx_synchrotron_beamline 08ID-1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5SD0 _reflns.pdbx_diffrn_id 1 _reflns.d_resolution_high 1.750 _reflns.d_resolution_low 50 _reflns.pdbx_number_measured_all 87095 _reflns.number_obs 15006 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_netI_over_sigmaI 15.950 _reflns.percent_possible_obs 99.600 _reflns.B_iso_Wilson_estimate 24.867 _reflns.Rmerge_F_obs 0.999 _reflns.observed_criterion_sigma_I -3.000 _reflns.pdbx_Rrim_I_all 0.078 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_Rpim_I_all ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star 1.750 1.800 3190 ? 1043 ? 0.500 2.350 ? ? ? ? ? 1086 ? ? 0.797 ? ? 96.000 0.600 ? ? 1 ? ? 1.800 1.840 4110 ? 1058 ? 0.374 3.610 ? ? ? ? ? 1069 ? ? 0.906 ? ? 99.000 0.434 ? ? 2 ? ? 1.840 1.900 5105 ? 1030 ? 0.333 4.920 ? ? ? ? ? 1031 ? ? 0.935 ? ? 99.900 0.373 ? ? 3 ? ? 1.900 1.960 5888 ? 1003 ? 0.251 7.090 ? ? ? ? ? 1003 ? ? 0.975 ? ? 100.000 0.276 ? ? 4 ? ? 1.960 2.020 6356 ? 973 ? 0.207 8.890 ? ? ? ? ? 974 ? ? 0.983 ? ? 99.900 0.225 ? ? 5 ? ? 2.020 2.090 6203 ? 957 ? 0.189 9.880 ? ? ? ? ? 957 ? ? 0.987 ? ? 100.000 0.206 ? ? 6 ? ? 2.090 2.170 5711 ? 916 ? 0.143 11.910 ? ? ? ? ? 916 ? ? 0.992 ? ? 100.000 0.156 ? ? 7 ? ? 2.170 2.260 5597 ? 876 ? 0.126 13.090 ? ? ? ? ? 877 ? ? 0.994 ? ? 99.900 0.137 ? ? 8 ? ? 2.260 2.360 5600 ? 851 ? 0.114 14.760 ? ? ? ? ? 851 ? ? 0.995 ? ? 100.000 0.124 ? ? 9 ? ? 2.360 2.470 5345 ? 817 ? 0.098 16.610 ? ? ? ? ? 818 ? ? 0.996 ? ? 99.900 0.106 ? ? 10 ? ? 2.470 2.610 4811 ? 773 ? 0.084 19.380 ? ? ? ? ? 774 ? ? 0.995 ? ? 99.900 0.092 ? ? 11 ? ? 2.610 2.770 4709 ? 740 ? 0.077 21.020 ? ? ? ? ? 740 ? ? 0.996 ? ? 100.000 0.083 ? ? 12 ? ? 2.770 2.960 4504 ? 698 ? 0.066 24.250 ? ? ? ? ? 698 ? ? 0.997 ? ? 100.000 0.071 ? ? 13 ? ? 2.960 3.200 4178 ? 653 ? 0.058 27.290 ? ? ? ? ? 653 ? ? 0.998 ? ? 100.000 0.063 ? ? 14 ? ? 3.200 3.500 3738 ? 599 ? 0.049 30.700 ? ? ? ? ? 599 ? ? 0.998 ? ? 100.000 0.054 ? ? 15 ? ? 3.500 3.910 3423 ? 553 ? 0.042 34.200 ? ? ? ? ? 553 ? ? 0.999 ? ? 100.000 0.046 ? ? 16 ? ? 3.910 4.520 3085 ? 491 ? 0.038 36.770 ? ? ? ? ? 491 ? ? 0.999 ? ? 100.000 0.042 ? ? 17 ? ? 4.520 5.530 2509 ? 430 ? 0.039 35.220 ? ? ? ? ? 431 ? ? 0.999 ? ? 99.800 0.042 ? ? 18 ? ? 5.530 7.830 1994 ? 337 ? 0.042 33.240 ? ? ? ? ? 337 ? ? 0.998 ? ? 100.000 0.045 ? ? 19 ? ? 7.830 ? 1039 ? 208 ? 0.035 34.950 ? ? ? ? ? 209 ? ? 0.998 ? ? 99.500 0.040 ? ? 20 ? ? # _refine.entry_id 5SD0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.7500 _refine.ls_d_res_low 49.1440 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.5600 _refine.ls_number_reflns_obs 15004 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1497 _refine.ls_R_factor_R_work 0.1453 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1858 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.6600 _refine.ls_number_reflns_R_free 1600 _refine.ls_number_reflns_R_work 13404 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 21.4083 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1600 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 64.440 _refine.B_iso_min 9.760 _refine.pdbx_overall_phase_error 18.7900 _refine.occupancy_max 1.000 _refine.occupancy_min 0.290 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1294 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 93 _refine_hist.number_atoms_solvent 184 _refine_hist.number_atoms_total 1571 _refine_hist.d_res_high 1.7500 _refine_hist.d_res_low 49.1440 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1459 0.006 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1983 0.891 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 203 0.054 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 268 0.006 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 855 20.957 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs 1.7499 1.8064 11 96.0000 1149 . 0.2247 0.2672 . 124 . 1273 . 'X-RAY DIFFRACTION' . 1.8064 1.8710 11 100.0000 1198 . 0.2076 0.2877 . 145 . 1343 . 'X-RAY DIFFRACTION' . 1.8710 1.9459 11 100.0000 1222 . 0.1727 0.2521 . 136 . 1358 . 'X-RAY DIFFRACTION' . 1.9459 2.0344 11 100.0000 1177 . 0.1485 0.2161 . 142 . 1319 . 'X-RAY DIFFRACTION' . 2.0344 2.1417 11 100.0000 1220 . 0.1519 0.2096 . 145 . 1365 . 'X-RAY DIFFRACTION' . 2.1417 2.2759 11 100.0000 1212 . 0.1527 0.1900 . 141 . 1353 . 'X-RAY DIFFRACTION' . 2.2759 2.4516 11 100.0000 1208 . 0.1562 0.1800 . 163 . 1371 . 'X-RAY DIFFRACTION' . 2.4516 2.6983 11 100.0000 1234 . 0.1490 0.1844 . 128 . 1362 . 'X-RAY DIFFRACTION' . 2.6983 3.0887 11 100.0000 1229 . 0.1422 0.1948 . 144 . 1373 . 'X-RAY DIFFRACTION' . 3.0887 3.8912 11 100.0000 1242 . 0.1243 0.1526 . 156 . 1398 . 'X-RAY DIFFRACTION' . 3.8912 49.1632 11 100.0000 1313 . 0.1258 0.1597 . 176 . 1489 . 'X-RAY DIFFRACTION' . # _struct.entry_id 5SD0 _struct.title 'Crystal Structure of Dihydrofolate Reductase from Mycobacterium tuberculosis bound to NADP and SDDC Inhibitor SDDC-1225' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5SD0 _struct_keywords.text ;Mycobacterium tuberculosis, DHFR, NADP, Folate, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR complex, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID ; _struct_keywords.pdbx_keywords 'OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 7 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is a monomer, the same as asu' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 44 ? MET A 56 ? LEU A 24 MET A 36 1 ? 13 HELX_P HELX_P2 AA2 ARG A 64 ? LEU A 70 ? ARG A 44 LEU A 50 1 ? 7 HELX_P HELX_P3 AA3 PRO A 71 ? ARG A 75 ? PRO A 51 ARG A 55 5 ? 5 HELX_P HELX_P4 AA4 SER A 101 ? LEU A 106 ? SER A 81 LEU A 86 1 ? 6 HELX_P HELX_P5 AA5 GLY A 116 ? LEU A 124 ? GLY A 96 LEU A 104 1 ? 9 HELX_P HELX_P6 AA6 PRO A 125 ? ALA A 127 ? PRO A 105 ALA A 107 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 75 A . ? ARG 55 A PRO 76 A ? PRO 56 A 1 -0.50 2 GLY 115 A . ? GLY 95 A GLY 116 A ? GLY 96 A 1 1.00 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 8 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA2 6 7 ? anti-parallel AA2 7 8 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 97 ? VAL A 99 ? GLU A 77 VAL A 79 AA1 2 ARG A 81 ? LEU A 85 ? ARG A 61 LEU A 65 AA1 3 THR A 59 ? GLY A 63 ? THR A 39 GLY A 43 AA1 4 GLU A 110 ? VAL A 113 ? GLU A 90 VAL A 93 AA1 5 MET A 21 ? ALA A 29 ? MET A 1 ALA A 9 AA1 6 ARG A 129 ? VAL A 135 ? ARG A 109 VAL A 115 AA1 7 ARG A 170 ? HIS A 177 ? ARG A 150 HIS A 157 AA1 8 ARG A 156 ? THR A 159 ? ARG A 136 THR A 139 AA2 1 GLU A 97 ? VAL A 99 ? GLU A 77 VAL A 79 AA2 2 ARG A 81 ? LEU A 85 ? ARG A 61 LEU A 65 AA2 3 THR A 59 ? GLY A 63 ? THR A 39 GLY A 43 AA2 4 GLU A 110 ? VAL A 113 ? GLU A 90 VAL A 93 AA2 5 MET A 21 ? ALA A 29 ? MET A 1 ALA A 9 AA2 6 ARG A 129 ? VAL A 135 ? ARG A 109 VAL A 115 AA2 7 ARG A 170 ? HIS A 177 ? ARG A 150 HIS A 157 AA2 8 ARG A 163 ? PHE A 164 ? ARG A 143 PHE A 144 AA3 1 VAL A 33 ? GLY A 35 ? VAL A 13 GLY A 15 AA3 2 ALA A 146 ? LEU A 147 ? ALA A 126 LEU A 127 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLU A 97 ? O GLU A 77 N VAL A 84 ? N VAL A 64 AA1 2 3 O ARG A 81 ? O ARG A 61 N ILE A 60 ? N ILE A 40 AA1 3 4 N THR A 59 ? N THR A 39 O TRP A 112 ? O TRP A 92 AA1 4 5 O VAL A 113 ? O VAL A 93 N GLY A 23 ? N GLY A 3 AA1 5 6 N GLN A 28 ? N GLN A 8 O VAL A 135 ? O VAL A 115 AA1 6 7 N GLU A 134 ? N GLU A 114 O ARG A 172 ? O ARG A 152 AA1 7 8 O HIS A 177 ? O HIS A 157 N ARG A 156 ? N ARG A 136 AA2 1 2 O GLU A 97 ? O GLU A 77 N VAL A 84 ? N VAL A 64 AA2 2 3 O ARG A 81 ? O ARG A 61 N ILE A 60 ? N ILE A 40 AA2 3 4 N THR A 59 ? N THR A 39 O TRP A 112 ? O TRP A 92 AA2 4 5 O VAL A 113 ? O VAL A 93 N GLY A 23 ? N GLY A 3 AA2 5 6 N GLN A 28 ? N GLN A 8 O VAL A 135 ? O VAL A 115 AA2 6 7 N GLU A 134 ? N GLU A 114 O ARG A 172 ? O ARG A 152 AA2 7 8 O TYR A 171 ? O TYR A 151 N ARG A 163 ? N ARG A 143 AA3 1 2 N ILE A 34 ? N ILE A 14 O ALA A 146 ? O ALA A 126 # _atom_sites.entry_id 5SD0 _atom_sites.fract_transf_matrix[1][1] 0.033921 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014896 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013862 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 -6 LEU LEU A . n A 1 15 VAL 15 -5 -5 VAL VAL A . n A 1 16 PRO 16 -4 -4 PRO PRO A . n A 1 17 ARG 17 -3 -3 ARG ARG A . n A 1 18 GLY 18 -2 -2 GLY GLY A . n A 1 19 SER 19 -1 -1 SER SER A . n A 1 20 HIS 20 0 0 HIS HIS A . n A 1 21 MET 21 1 1 MET MET A . n A 1 22 VAL 22 2 2 VAL VAL A . n A 1 23 GLY 23 3 3 GLY GLY A . n A 1 24 LEU 24 4 4 LEU LEU A . n A 1 25 ILE 25 5 5 ILE ILE A . n A 1 26 TRP 26 6 6 TRP TRP A . n A 1 27 ALA 27 7 7 ALA ALA A . n A 1 28 GLN 28 8 8 GLN GLN A . n A 1 29 ALA 29 9 9 ALA ALA A . n A 1 30 THR 30 10 10 THR THR A . n A 1 31 SER 31 11 11 SER SER A . n A 1 32 GLY 32 12 12 GLY GLY A . n A 1 33 VAL 33 13 13 VAL VAL A . n A 1 34 ILE 34 14 14 ILE ILE A . n A 1 35 GLY 35 15 15 GLY GLY A . n A 1 36 ARG 36 16 16 ARG ARG A . n A 1 37 GLY 37 17 17 GLY GLY A . n A 1 38 GLY 38 18 18 GLY GLY A . n A 1 39 ASP 39 19 19 ASP ASP A . n A 1 40 ILE 40 20 20 ILE ILE A . n A 1 41 PRO 41 21 21 PRO PRO A . n A 1 42 TRP 42 22 22 TRP TRP A . n A 1 43 ARG 43 23 23 ARG ARG A . n A 1 44 LEU 44 24 24 LEU LEU A . n A 1 45 PRO 45 25 25 PRO PRO A . n A 1 46 GLU 46 26 26 GLU GLU A . n A 1 47 ASP 47 27 27 ASP ASP A . n A 1 48 GLN 48 28 28 GLN GLN A . n A 1 49 ALA 49 29 29 ALA ALA A . n A 1 50 HIS 50 30 30 HIS HIS A . n A 1 51 PHE 51 31 31 PHE PHE A . n A 1 52 ARG 52 32 32 ARG ARG A . n A 1 53 GLU 53 33 33 GLU GLU A . n A 1 54 ILE 54 34 34 ILE ILE A . n A 1 55 THR 55 35 35 THR THR A . n A 1 56 MET 56 36 36 MET MET A . n A 1 57 GLY 57 37 37 GLY GLY A . n A 1 58 HIS 58 38 38 HIS HIS A . n A 1 59 THR 59 39 39 THR THR A . n A 1 60 ILE 60 40 40 ILE ILE A . n A 1 61 VAL 61 41 41 VAL VAL A . n A 1 62 MET 62 42 42 MET MET A . n A 1 63 GLY 63 43 43 GLY GLY A . n A 1 64 ARG 64 44 44 ARG ARG A . n A 1 65 ARG 65 45 45 ARG ARG A . n A 1 66 THR 66 46 46 THR THR A . n A 1 67 TRP 67 47 47 TRP TRP A . n A 1 68 ASP 68 48 48 ASP ASP A . n A 1 69 SER 69 49 49 SER SER A . n A 1 70 LEU 70 50 50 LEU LEU A . n A 1 71 PRO 71 51 51 PRO PRO A . n A 1 72 ALA 72 52 52 ALA ALA A . n A 1 73 LYS 73 53 53 LYS LYS A . n A 1 74 VAL 74 54 54 VAL VAL A . n A 1 75 ARG 75 55 55 ARG ARG A . n A 1 76 PRO 76 56 56 PRO PRO A . n A 1 77 LEU 77 57 57 LEU LEU A . n A 1 78 PRO 78 58 58 PRO PRO A . n A 1 79 GLY 79 59 59 GLY GLY A . n A 1 80 ARG 80 60 60 ARG ARG A . n A 1 81 ARG 81 61 61 ARG ARG A . n A 1 82 ASN 82 62 62 ASN ASN A . n A 1 83 VAL 83 63 63 VAL VAL A . n A 1 84 VAL 84 64 64 VAL VAL A . n A 1 85 LEU 85 65 65 LEU LEU A . n A 1 86 SER 86 66 66 SER SER A . n A 1 87 ARG 87 67 67 ARG ARG A . n A 1 88 GLN 88 68 68 GLN GLN A . n A 1 89 ALA 89 69 69 ALA ALA A . n A 1 90 ASP 90 70 70 ASP ASP A . n A 1 91 PHE 91 71 71 PHE PHE A . n A 1 92 MET 92 72 72 MET MET A . n A 1 93 ALA 93 73 73 ALA ALA A . n A 1 94 SER 94 74 74 SER SER A . n A 1 95 GLY 95 75 75 GLY GLY A . n A 1 96 ALA 96 76 76 ALA ALA A . n A 1 97 GLU 97 77 77 GLU GLU A . n A 1 98 VAL 98 78 78 VAL VAL A . n A 1 99 VAL 99 79 79 VAL VAL A . n A 1 100 GLY 100 80 80 GLY GLY A . n A 1 101 SER 101 81 81 SER SER A . n A 1 102 LEU 102 82 82 LEU LEU A . n A 1 103 GLU 103 83 83 GLU GLU A . n A 1 104 GLU 104 84 84 GLU GLU A . n A 1 105 ALA 105 85 85 ALA ALA A . n A 1 106 LEU 106 86 86 LEU LEU A . n A 1 107 THR 107 87 87 THR THR A . n A 1 108 SER 108 88 88 SER SER A . n A 1 109 PRO 109 89 89 PRO PRO A . n A 1 110 GLU 110 90 90 GLU GLU A . n A 1 111 THR 111 91 91 THR THR A . n A 1 112 TRP 112 92 92 TRP TRP A . n A 1 113 VAL 113 93 93 VAL VAL A . n A 1 114 ILE 114 94 94 ILE ILE A . n A 1 115 GLY 115 95 95 GLY GLY A . n A 1 116 GLY 116 96 96 GLY GLY A . n A 1 117 GLY 117 97 97 GLY GLY A . n A 1 118 GLN 118 98 98 GLN GLN A . n A 1 119 VAL 119 99 99 VAL VAL A . n A 1 120 TYR 120 100 100 TYR TYR A . n A 1 121 ALA 121 101 101 ALA ALA A . n A 1 122 LEU 122 102 102 LEU LEU A . n A 1 123 ALA 123 103 103 ALA ALA A . n A 1 124 LEU 124 104 104 LEU LEU A . n A 1 125 PRO 125 105 105 PRO PRO A . n A 1 126 TYR 126 106 106 TYR TYR A . n A 1 127 ALA 127 107 107 ALA ALA A . n A 1 128 THR 128 108 108 THR THR A . n A 1 129 ARG 129 109 109 ARG ARG A . n A 1 130 CYS 130 110 110 CYS CYS A . n A 1 131 GLU 131 111 111 GLU GLU A . n A 1 132 VAL 132 112 112 VAL VAL A . n A 1 133 THR 133 113 113 THR THR A . n A 1 134 GLU 134 114 114 GLU GLU A . n A 1 135 VAL 135 115 115 VAL VAL A . n A 1 136 ASP 136 116 116 ASP ASP A . n A 1 137 ILE 137 117 117 ILE ILE A . n A 1 138 GLY 138 118 118 GLY GLY A . n A 1 139 LEU 139 119 119 LEU LEU A . n A 1 140 PRO 140 120 120 PRO PRO A . n A 1 141 ARG 141 121 121 ARG ARG A . n A 1 142 GLU 142 122 122 GLU GLU A . n A 1 143 ALA 143 123 123 ALA ALA A . n A 1 144 GLY 144 124 124 GLY GLY A . n A 1 145 ASP 145 125 125 ASP ASP A . n A 1 146 ALA 146 126 126 ALA ALA A . n A 1 147 LEU 147 127 127 LEU LEU A . n A 1 148 ALA 148 128 128 ALA ALA A . n A 1 149 PRO 149 129 129 PRO PRO A . n A 1 150 VAL 150 130 130 VAL VAL A . n A 1 151 LEU 151 131 131 LEU LEU A . n A 1 152 ASP 152 132 132 ASP ASP A . n A 1 153 GLU 153 133 133 GLU GLU A . n A 1 154 THR 154 134 134 THR THR A . n A 1 155 TRP 155 135 135 TRP TRP A . n A 1 156 ARG 156 136 136 ARG ARG A . n A 1 157 GLY 157 137 137 GLY GLY A . n A 1 158 GLU 158 138 138 GLU GLU A . n A 1 159 THR 159 139 139 THR THR A . n A 1 160 GLY 160 140 140 GLY GLY A . n A 1 161 GLU 161 141 141 GLU GLU A . n A 1 162 TRP 162 142 142 TRP TRP A . n A 1 163 ARG 163 143 143 ARG ARG A . n A 1 164 PHE 164 144 144 PHE PHE A . n A 1 165 SER 165 145 145 SER SER A . n A 1 166 ARG 166 146 146 ARG ARG A . n A 1 167 SER 167 147 147 SER SER A . n A 1 168 GLY 168 148 148 GLY GLY A . n A 1 169 LEU 169 149 149 LEU LEU A . n A 1 170 ARG 170 150 150 ARG ARG A . n A 1 171 TYR 171 151 151 TYR TYR A . n A 1 172 ARG 172 152 152 ARG ARG A . n A 1 173 LEU 173 153 153 LEU LEU A . n A 1 174 TYR 174 154 154 TYR TYR A . n A 1 175 SER 175 155 155 SER SER A . n A 1 176 TYR 176 156 156 TYR TYR A . n A 1 177 HIS 177 157 157 HIS HIS A . n A 1 178 ARG 178 158 158 ARG ARG A . n A 1 179 SER 179 159 159 SER SER A . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 isabelle.phan@seattlechildrens.org Isabelle Phan ? 'principal investigator/group leader' 0000-0001-6873-3401 3 peter.myler@seattlechildrens.org Peter Myler ? 'principal investigator/group leader' 0000-0002-0056-0513 4 julie.early@seattlechildrens.org Julie Early ? 'principal investigator/group leader' 0000-0003-1224-2747 5 donald.lorimer@ucb.com Don Lorimer ? 'principal investigator/group leader' 0000-0002-9638-8083 6 peter.horanyi@ucb.com Peter Horanyi ? 'principal investigator/group leader' 0000-0003-2218-9986 7 tom.edwards@ucb.com Tom Edwards ? 'principal investigator/group leader' 0000-0002-0474-8003 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP 1 201 160 NAP NAP A . C 3 HIK 1 202 161 HIK 225 A . D 4 CL 1 203 162 CL CL A . E 5 EDO 1 204 163 EDO EDO A . F 5 EDO 1 205 164 EDO EDO A . G 5 EDO 1 206 165 EDO EDO A . H 5 EDO 1 207 166 EDO EDO A . I 6 FMT 1 208 1 FMT FMT A . J 7 HOH 1 301 355 HOH HOH A . J 7 HOH 2 302 218 HOH HOH A . J 7 HOH 3 303 240 HOH HOH A . J 7 HOH 4 304 367 HOH HOH A . J 7 HOH 5 305 269 HOH HOH A . J 7 HOH 6 306 322 HOH HOH A . J 7 HOH 7 307 385 HOH HOH A . J 7 HOH 8 308 318 HOH HOH A . J 7 HOH 9 309 304 HOH HOH A . J 7 HOH 10 310 238 HOH HOH A . J 7 HOH 11 311 307 HOH HOH A . J 7 HOH 12 312 370 HOH HOH A . J 7 HOH 13 313 197 HOH HOH A . J 7 HOH 14 314 277 HOH HOH A . J 7 HOH 15 315 234 HOH HOH A . J 7 HOH 16 316 188 HOH HOH A . J 7 HOH 17 317 245 HOH HOH A . J 7 HOH 18 318 291 HOH HOH A . J 7 HOH 19 319 242 HOH HOH A . J 7 HOH 20 320 300 HOH HOH A . J 7 HOH 21 321 203 HOH HOH A . J 7 HOH 22 322 233 HOH HOH A . J 7 HOH 23 323 244 HOH HOH A . J 7 HOH 24 324 187 HOH HOH A . J 7 HOH 25 325 228 HOH HOH A . J 7 HOH 26 326 297 HOH HOH A . J 7 HOH 27 327 200 HOH HOH A . J 7 HOH 28 328 247 HOH HOH A . J 7 HOH 29 329 298 HOH HOH A . J 7 HOH 30 330 286 HOH HOH A . J 7 HOH 31 331 263 HOH HOH A . J 7 HOH 32 332 268 HOH HOH A . J 7 HOH 33 333 288 HOH HOH A . J 7 HOH 34 334 202 HOH HOH A . J 7 HOH 35 335 336 HOH HOH A . J 7 HOH 36 336 346 HOH HOH A . J 7 HOH 37 337 267 HOH HOH A . J 7 HOH 38 338 229 HOH HOH A . J 7 HOH 39 339 184 HOH HOH A . J 7 HOH 40 340 343 HOH HOH A . J 7 HOH 41 341 309 HOH HOH A . J 7 HOH 42 342 171 HOH HOH A . J 7 HOH 43 343 221 HOH HOH A . J 7 HOH 44 344 289 HOH HOH A . J 7 HOH 45 345 380 HOH HOH A . J 7 HOH 46 346 166 HOH HOH A . J 7 HOH 47 347 190 HOH HOH A . J 7 HOH 48 348 186 HOH HOH A . J 7 HOH 49 349 178 HOH HOH A . J 7 HOH 50 350 260 HOH HOH A . J 7 HOH 51 351 194 HOH HOH A . J 7 HOH 52 352 189 HOH HOH A . J 7 HOH 53 353 183 HOH HOH A . J 7 HOH 54 354 323 HOH HOH A . J 7 HOH 55 355 163 HOH HOH A . J 7 HOH 56 356 224 HOH HOH A . J 7 HOH 57 357 326 HOH HOH A . J 7 HOH 58 358 330 HOH HOH A . J 7 HOH 59 359 264 HOH HOH A . J 7 HOH 60 360 255 HOH HOH A . J 7 HOH 61 361 181 HOH HOH A . J 7 HOH 62 362 258 HOH HOH A . J 7 HOH 63 363 313 HOH HOH A . J 7 HOH 64 364 231 HOH HOH A . J 7 HOH 65 365 243 HOH HOH A . J 7 HOH 66 366 250 HOH HOH A . J 7 HOH 67 367 206 HOH HOH A . J 7 HOH 68 368 230 HOH HOH A . J 7 HOH 69 369 174 HOH HOH A . J 7 HOH 70 370 275 HOH HOH A . J 7 HOH 71 371 191 HOH HOH A . J 7 HOH 72 372 314 HOH HOH A . J 7 HOH 73 373 341 HOH HOH A . J 7 HOH 74 374 207 HOH HOH A . J 7 HOH 75 375 201 HOH HOH A . J 7 HOH 76 376 278 HOH HOH A . J 7 HOH 77 377 222 HOH HOH A . J 7 HOH 78 378 372 HOH HOH A . J 7 HOH 79 379 199 HOH HOH A . J 7 HOH 80 380 213 HOH HOH A . J 7 HOH 81 381 168 HOH HOH A . J 7 HOH 82 382 169 HOH HOH A . J 7 HOH 83 383 350 HOH HOH A . J 7 HOH 84 384 215 HOH HOH A . J 7 HOH 85 385 338 HOH HOH A . J 7 HOH 86 386 290 HOH HOH A . J 7 HOH 87 387 165 HOH HOH A . J 7 HOH 88 388 324 HOH HOH A . J 7 HOH 89 389 303 HOH HOH A . J 7 HOH 90 390 356 HOH HOH A . J 7 HOH 91 391 363 HOH HOH A . J 7 HOH 92 392 257 HOH HOH A . J 7 HOH 93 393 209 HOH HOH A . J 7 HOH 94 394 167 HOH HOH A . J 7 HOH 95 395 256 HOH HOH A . J 7 HOH 96 396 239 HOH HOH A . J 7 HOH 97 397 195 HOH HOH A . J 7 HOH 98 398 217 HOH HOH A . J 7 HOH 99 399 271 HOH HOH A . J 7 HOH 100 400 329 HOH HOH A . J 7 HOH 101 401 373 HOH HOH A . J 7 HOH 102 402 262 HOH HOH A . J 7 HOH 103 403 317 HOH HOH A . J 7 HOH 104 404 192 HOH HOH A . J 7 HOH 105 405 365 HOH HOH A . J 7 HOH 106 406 295 HOH HOH A . J 7 HOH 107 407 185 HOH HOH A . J 7 HOH 108 408 325 HOH HOH A . J 7 HOH 109 409 254 HOH HOH A . J 7 HOH 110 410 274 HOH HOH A . J 7 HOH 111 411 292 HOH HOH A . J 7 HOH 112 412 235 HOH HOH A . J 7 HOH 113 413 294 HOH HOH A . J 7 HOH 114 414 182 HOH HOH A . J 7 HOH 115 415 214 HOH HOH A . J 7 HOH 116 416 328 HOH HOH A . J 7 HOH 117 417 374 HOH HOH A . J 7 HOH 118 418 339 HOH HOH A . J 7 HOH 119 419 287 HOH HOH A . J 7 HOH 120 420 220 HOH HOH A . J 7 HOH 121 421 320 HOH HOH A . J 7 HOH 122 422 210 HOH HOH A . J 7 HOH 123 423 282 HOH HOH A . J 7 HOH 124 424 261 HOH HOH A . J 7 HOH 125 425 296 HOH HOH A . J 7 HOH 126 426 312 HOH HOH A . J 7 HOH 127 427 248 HOH HOH A . J 7 HOH 128 428 232 HOH HOH A . J 7 HOH 129 429 241 HOH HOH A . J 7 HOH 130 430 342 HOH HOH A . J 7 HOH 131 431 331 HOH HOH A . J 7 HOH 132 432 216 HOH HOH A . J 7 HOH 133 433 308 HOH HOH A . J 7 HOH 134 434 337 HOH HOH A . J 7 HOH 135 435 172 HOH HOH A . J 7 HOH 136 436 227 HOH HOH A . J 7 HOH 137 437 266 HOH HOH A . J 7 HOH 138 438 270 HOH HOH A . J 7 HOH 139 439 205 HOH HOH A . J 7 HOH 140 440 364 HOH HOH A . J 7 HOH 141 441 193 HOH HOH A . J 7 HOH 142 442 348 HOH HOH A . J 7 HOH 143 443 196 HOH HOH A . J 7 HOH 144 444 334 HOH HOH A . J 7 HOH 145 445 281 HOH HOH A . J 7 HOH 146 446 351 HOH HOH A . J 7 HOH 147 447 361 HOH HOH A . J 7 HOH 148 448 345 HOH HOH A . J 7 HOH 149 449 226 HOH HOH A . J 7 HOH 150 450 349 HOH HOH A . J 7 HOH 151 451 354 HOH HOH A . J 7 HOH 152 452 252 HOH HOH A . J 7 HOH 153 453 315 HOH HOH A . J 7 HOH 154 454 219 HOH HOH A . J 7 HOH 155 455 299 HOH HOH A . J 7 HOH 156 456 371 HOH HOH A . J 7 HOH 157 457 383 HOH HOH A . J 7 HOH 158 458 333 HOH HOH A . J 7 HOH 159 459 384 HOH HOH A . J 7 HOH 160 460 376 HOH HOH A . J 7 HOH 161 461 379 HOH HOH A . J 7 HOH 162 462 249 HOH HOH A . J 7 HOH 163 463 276 HOH HOH A . J 7 HOH 164 464 358 HOH HOH A . J 7 HOH 165 465 377 HOH HOH A . J 7 HOH 166 466 316 HOH HOH A . J 7 HOH 167 467 279 HOH HOH A . J 7 HOH 168 468 253 HOH HOH A . J 7 HOH 169 469 382 HOH HOH A . J 7 HOH 170 470 285 HOH HOH A . J 7 HOH 171 471 381 HOH HOH A . J 7 HOH 172 472 360 HOH HOH A . J 7 HOH 173 473 211 HOH HOH A . J 7 HOH 174 474 368 HOH HOH A . J 7 HOH 175 475 293 HOH HOH A . J 7 HOH 176 476 357 HOH HOH A . J 7 HOH 177 477 272 HOH HOH A . J 7 HOH 178 478 369 HOH HOH A . J 7 HOH 179 479 332 HOH HOH A . J 7 HOH 180 480 204 HOH HOH A . J 7 HOH 181 481 223 HOH HOH A . J 7 HOH 182 482 375 HOH HOH A . J 7 HOH 183 483 327 HOH HOH A . J 7 HOH 184 484 378 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-09 2 'Structure model' 1 1 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_SG_project 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' struct_keywords # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.SG_entry' 2 2 'Structure model' '_struct_keywords.text' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 14.3926 12.9308 6.5272 0.1147 0.1271 0.1079 0.0054 -0.0107 0.0071 0.5616 4.3980 4.3907 0.0819 0.0037 -4.5600 0.0565 -0.0091 -0.0410 0.1254 0.0745 0.0389 -0.2450 0.0536 0.2016 'X-RAY DIFFRACTION' 2 ? refined 11.0387 -0.3246 23.2961 0.2016 0.1387 0.1338 -0.0137 -0.0311 0.0380 2.6420 2.2766 1.2509 0.8883 0.1821 1.3438 0.1439 -0.0115 -0.1426 -0.1710 -0.2578 -0.1670 0.1988 0.1767 -0.0577 'X-RAY DIFFRACTION' 3 ? refined 2.6886 8.2460 14.1932 0.1301 0.1900 0.1772 -0.0185 -0.0157 -0.0036 3.8700 4.7968 5.0687 -1.7274 -4.0944 0.0642 0.0760 -0.0787 -0.0111 0.0286 -0.2585 0.2358 0.0227 0.2701 -0.4983 'X-RAY DIFFRACTION' 4 ? refined 10.5731 -3.8623 5.0249 0.1222 0.1261 0.1034 -0.0105 -0.0072 -0.0064 3.3301 4.2391 1.7913 -1.7203 0.1007 -0.1994 0.0494 -0.0561 0.0054 0.0559 -0.1170 -0.0569 -0.0790 0.0892 -0.0281 'X-RAY DIFFRACTION' 5 ? refined 18.3605 2.7949 -1.4777 0.2365 0.1905 0.2286 -0.0099 0.0243 -0.0049 0.6700 9.4774 1.6707 -2.2786 0.5804 -3.2303 -0.1266 -0.0086 0.1570 0.0816 0.2600 -0.5553 -0.2234 -0.1479 0.0404 'X-RAY DIFFRACTION' 6 ? refined 18.5712 6.2739 8.8189 0.1172 0.1117 0.0961 0.0084 -0.0001 -0.0184 3.4866 4.9213 3.5124 0.8924 0.3713 -1.3329 0.0719 -0.0420 -0.0339 0.0901 -0.0192 -0.2195 -0.1768 0.0346 0.0625 'X-RAY DIFFRACTION' 7 ? refined 17.7401 9.9286 20.6538 0.1335 0.1303 0.1411 -0.0191 -0.0287 -0.0018 2.0083 0.6321 1.8977 -0.2313 -0.3580 0.8023 0.1112 0.0273 -0.1266 -0.1881 -0.0260 -0.0700 0.1304 -0.0000 0.1023 'X-RAY DIFFRACTION' 8 ? refined 2.5062 11.9269 28.1651 0.1629 0.1662 0.1214 -0.0188 0.0046 -0.0094 8.1056 8.9006 0.6950 7.2941 -0.4182 0.3566 0.0463 0.0827 -0.1655 -0.1252 0.1123 0.2318 -0.0955 0.0748 -0.2359 'X-RAY DIFFRACTION' 9 ? refined 14.0689 16.6145 17.8851 0.1660 0.1632 0.1801 -0.0146 -0.0021 0.0228 4.7289 3.1381 9.2075 1.6649 -6.5855 -2.0264 -0.0059 0.0349 -0.1971 0.0462 0.2749 -0.1517 -0.2343 0.1781 0.1118 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resid -6 through 9 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resid 10 through 24 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 ;chain 'A' and (resid 25 through 35 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 0 A 0 ;chain 'A' and (resid 36 through 76 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 0 A 0 ;chain 'A' and (resid 77 through 89 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 0 A 0 ;chain 'A' and (resid 90 through 106 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 0 A 0 ;chain 'A' and (resid 107 through 139 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 0 A 0 ;chain 'A' and (resid 140 through 150 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 0 A 0 ;chain 'A' and (resid 151 through 159 ) ; ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_2744 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 6 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 7 # _pdbx_entry_details.entry_id 5SD0 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 ND1 A HIS 157 ? ? O A HOH 301 ? ? 2.13 2 1 O A HOH 305 ? ? O A HOH 310 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 21 ? ? -82.79 30.30 2 1 LEU A 86 ? ? -108.72 57.24 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU -6 ? CG ? A LEU 14 CG 2 1 Y 1 A LEU -6 ? CD1 ? A LEU 14 CD1 3 1 Y 1 A LEU -6 ? CD2 ? A LEU 14 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number HHSN272201700059C _pdbx_audit_support.ordinal 1 # _pdbx_deposit_group.group_title 'DHFR structures, SSGCID' _pdbx_deposit_group.group_description 'human and M. tuberculosis DHFR structures bound to ligands' _pdbx_deposit_group.group_type 'ground state' _pdbx_deposit_group.group_id G_1002223 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id HIK _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id HIK _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' NAP 3 '3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}pyridin-3-yl)propan-1-ol' HIK 4 'CHLORIDE ION' CL 5 1,2-ETHANEDIOL EDO 6 'FORMIC ACID' FMT 7 water HOH #