HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-DEC-21 5SD0 TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR SDDC-1225 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MTDHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: FOLA, DFRA, RV2763C, MTV002.28C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MYCOBACTERIUM TUBERCULOSIS, DHFR, NADP, FOLATE, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 22-MAY-24 5SD0 1 REMARK REVDAT 2 02-MAR-22 5SD0 1 KEYWDS REVDAT 1 09-FEB-22 5SD0 0 JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.M.DRANOW,D.G.CONRADY,D.FOX III, JRNL AUTH 2 C.M.LUKACS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS,J.ABENDROTH JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR JRNL TITL 3 SDDC-1225 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2744 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.660 REMARK 3 FREE R VALUE TEST SET COUNT : 1600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1632 - 3.8912 1.00 1313 176 0.1258 0.1597 REMARK 3 2 3.8912 - 3.0887 1.00 1242 156 0.1243 0.1526 REMARK 3 3 3.0887 - 2.6983 1.00 1229 144 0.1422 0.1948 REMARK 3 4 2.6983 - 2.4516 1.00 1234 128 0.1490 0.1844 REMARK 3 5 2.4516 - 2.2759 1.00 1208 163 0.1562 0.1800 REMARK 3 6 2.2759 - 2.1417 1.00 1212 141 0.1527 0.1900 REMARK 3 7 2.1417 - 2.0344 1.00 1220 145 0.1519 0.2096 REMARK 3 8 2.0344 - 1.9459 1.00 1177 142 0.1485 0.2161 REMARK 3 9 1.9459 - 1.8710 1.00 1222 136 0.1727 0.2521 REMARK 3 10 1.8710 - 1.8064 1.00 1198 145 0.2076 0.2877 REMARK 3 11 1.8064 - 1.7499 0.96 1149 124 0.2247 0.2672 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1459 REMARK 3 ANGLE : 0.891 1983 REMARK 3 CHIRALITY : 0.054 203 REMARK 3 PLANARITY : 0.006 268 REMARK 3 DIHEDRAL : 20.957 855 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -6 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3926 12.9308 6.5272 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.1271 REMARK 3 T33: 0.1079 T12: 0.0054 REMARK 3 T13: -0.0107 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.5616 L22: 4.3980 REMARK 3 L33: 4.3907 L12: 0.0819 REMARK 3 L13: 0.0037 L23: -4.5600 REMARK 3 S TENSOR REMARK 3 S11: 0.0565 S12: 0.1254 S13: 0.0745 REMARK 3 S21: -0.2450 S22: -0.0091 S23: 0.0389 REMARK 3 S31: 0.0536 S32: 0.2016 S33: -0.0410 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0387 -0.3246 23.2961 REMARK 3 T TENSOR REMARK 3 T11: 0.2016 T22: 0.1387 REMARK 3 T33: 0.1338 T12: -0.0137 REMARK 3 T13: -0.0311 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 2.6420 L22: 2.2766 REMARK 3 L33: 1.2509 L12: 0.8883 REMARK 3 L13: 0.1821 L23: 1.3438 REMARK 3 S TENSOR REMARK 3 S11: 0.1439 S12: -0.1710 S13: -0.2578 REMARK 3 S21: 0.1988 S22: -0.0115 S23: -0.1670 REMARK 3 S31: 0.1767 S32: -0.0577 S33: -0.1426 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6886 8.2460 14.1932 REMARK 3 T TENSOR REMARK 3 T11: 0.1301 T22: 0.1900 REMARK 3 T33: 0.1772 T12: -0.0185 REMARK 3 T13: -0.0157 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 3.8700 L22: 4.7968 REMARK 3 L33: 5.0687 L12: -1.7274 REMARK 3 L13: -4.0944 L23: 0.0642 REMARK 3 S TENSOR REMARK 3 S11: 0.0760 S12: 0.0286 S13: -0.2585 REMARK 3 S21: 0.0227 S22: -0.0787 S23: 0.2358 REMARK 3 S31: 0.2701 S32: -0.4983 S33: -0.0111 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5731 -3.8623 5.0249 REMARK 3 T TENSOR REMARK 3 T11: 0.1222 T22: 0.1261 REMARK 3 T33: 0.1034 T12: -0.0105 REMARK 3 T13: -0.0072 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 3.3301 L22: 4.2391 REMARK 3 L33: 1.7913 L12: -1.7203 REMARK 3 L13: 0.1007 L23: -0.1994 REMARK 3 S TENSOR REMARK 3 S11: 0.0494 S12: 0.0559 S13: -0.1170 REMARK 3 S21: -0.0790 S22: -0.0561 S23: -0.0569 REMARK 3 S31: 0.0892 S32: -0.0281 S33: 0.0054 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3605 2.7949 -1.4777 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.1905 REMARK 3 T33: 0.2286 T12: -0.0099 REMARK 3 T13: 0.0243 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.6700 L22: 9.4774 REMARK 3 L33: 1.6707 L12: -2.2786 REMARK 3 L13: 0.5804 L23: -3.2303 REMARK 3 S TENSOR REMARK 3 S11: -0.1266 S12: 0.0816 S13: 0.2600 REMARK 3 S21: -0.2234 S22: -0.0086 S23: -0.5553 REMARK 3 S31: -0.1479 S32: 0.0404 S33: 0.1570 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5712 6.2739 8.8189 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.1117 REMARK 3 T33: 0.0961 T12: 0.0084 REMARK 3 T13: -0.0001 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 3.4866 L22: 4.9213 REMARK 3 L33: 3.5124 L12: 0.8924 REMARK 3 L13: 0.3713 L23: -1.3329 REMARK 3 S TENSOR REMARK 3 S11: 0.0719 S12: 0.0901 S13: -0.0192 REMARK 3 S21: -0.1768 S22: -0.0420 S23: -0.2195 REMARK 3 S31: 0.0346 S32: 0.0625 S33: -0.0339 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7401 9.9286 20.6538 REMARK 3 T TENSOR REMARK 3 T11: 0.1335 T22: 0.1303 REMARK 3 T33: 0.1411 T12: -0.0191 REMARK 3 T13: -0.0287 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.0083 L22: 0.6321 REMARK 3 L33: 1.8977 L12: -0.2313 REMARK 3 L13: -0.3580 L23: 0.8023 REMARK 3 S TENSOR REMARK 3 S11: 0.1112 S12: -0.1881 S13: -0.0260 REMARK 3 S21: 0.1304 S22: 0.0273 S23: -0.0700 REMARK 3 S31: -0.0000 S32: 0.1023 S33: -0.1266 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5062 11.9269 28.1651 REMARK 3 T TENSOR REMARK 3 T11: 0.1629 T22: 0.1662 REMARK 3 T33: 0.1214 T12: -0.0188 REMARK 3 T13: 0.0046 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 8.1056 L22: 8.9006 REMARK 3 L33: 0.6950 L12: 7.2941 REMARK 3 L13: -0.4182 L23: 0.3566 REMARK 3 S TENSOR REMARK 3 S11: 0.0463 S12: -0.1252 S13: 0.1123 REMARK 3 S21: -0.0955 S22: 0.0827 S23: 0.2318 REMARK 3 S31: 0.0748 S32: -0.2359 S33: -0.1655 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0689 16.6145 17.8851 REMARK 3 T TENSOR REMARK 3 T11: 0.1660 T22: 0.1632 REMARK 3 T33: 0.1801 T12: -0.0146 REMARK 3 T13: -0.0021 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 4.7289 L22: 3.1381 REMARK 3 L33: 9.2075 L12: 1.6649 REMARK 3 L13: -6.5855 L23: -2.0264 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.0462 S13: 0.2749 REMARK 3 S21: -0.2343 S22: 0.0349 S23: -0.1517 REMARK 3 S31: 0.1781 S32: 0.1118 S33: -0.1971 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1001404353. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PAD REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15006 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG4 F7 (291338F7): 200MM MAGNESIUM REMARK 280 FORMATE, 100MM MES:NAOH PH6.5, 25% (W/V) PEG4000, 10MG/ML REMARK 280 PROTEIN CONC., CRYO 15% ETHYLENE GLYCOL, PUCK PWP0-15, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.74000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.07000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.56500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.07000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.74000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.56500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER, THE SAME AS ASU REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -6 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 157 O HOH A 301 2.13 REMARK 500 O HOH A 305 O HOH A 310 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 30.30 -82.79 REMARK 500 LEU A 86 57.24 -108.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 5SD0 A 1 159 UNP P9WNX1 DYR_MYCTU 3 161 SEQADV 5SD0 MET A -19 UNP P9WNX1 INITIATING METHIONINE SEQADV 5SD0 GLY A -18 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 SER A -17 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 SER A -16 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 HIS A -15 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 HIS A -14 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 HIS A -13 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 HIS A -12 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 HIS A -11 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 HIS A -10 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 SER A -9 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 SER A -8 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 GLY A -7 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 LEU A -6 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 VAL A -5 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 PRO A -4 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 ARG A -3 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 GLY A -2 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 SER A -1 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD0 HIS A 0 UNP P9WNX1 EXPRESSION TAG SEQRES 1 A 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 179 LEU VAL PRO ARG GLY SER HIS MET VAL GLY LEU ILE TRP SEQRES 3 A 179 ALA GLN ALA THR SER GLY VAL ILE GLY ARG GLY GLY ASP SEQRES 4 A 179 ILE PRO TRP ARG LEU PRO GLU ASP GLN ALA HIS PHE ARG SEQRES 5 A 179 GLU ILE THR MET GLY HIS THR ILE VAL MET GLY ARG ARG SEQRES 6 A 179 THR TRP ASP SER LEU PRO ALA LYS VAL ARG PRO LEU PRO SEQRES 7 A 179 GLY ARG ARG ASN VAL VAL LEU SER ARG GLN ALA ASP PHE SEQRES 8 A 179 MET ALA SER GLY ALA GLU VAL VAL GLY SER LEU GLU GLU SEQRES 9 A 179 ALA LEU THR SER PRO GLU THR TRP VAL ILE GLY GLY GLY SEQRES 10 A 179 GLN VAL TYR ALA LEU ALA LEU PRO TYR ALA THR ARG CYS SEQRES 11 A 179 GLU VAL THR GLU VAL ASP ILE GLY LEU PRO ARG GLU ALA SEQRES 12 A 179 GLY ASP ALA LEU ALA PRO VAL LEU ASP GLU THR TRP ARG SEQRES 13 A 179 GLY GLU THR GLY GLU TRP ARG PHE SER ARG SER GLY LEU SEQRES 14 A 179 ARG TYR ARG LEU TYR SER TYR HIS ARG SER HET NAP A 201 48 HET HIK A 202 50 HET CL A 203 1 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET FMT A 208 3 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM HIK 3-(2-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 HIK OXY]PROPOXY}PYRIDIN-3-YL)PROPAN-1-OL HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HIK C17 H25 N5 O3 FORMUL 4 CL CL 1- FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 FMT C H2 O2 FORMUL 10 HOH *184(H2 O) HELIX 1 AA1 LEU A 24 MET A 36 1 13 HELIX 2 AA2 ARG A 44 LEU A 50 1 7 HELIX 3 AA3 PRO A 51 ARG A 55 5 5 HELIX 4 AA4 SER A 81 LEU A 86 1 6 HELIX 5 AA5 GLY A 96 LEU A 104 1 9 HELIX 6 AA6 PRO A 105 ALA A 107 5 3 SHEET 1 AA1 8 GLU A 77 VAL A 79 0 SHEET 2 AA1 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA1 8 THR A 39 GLY A 43 1 N ILE A 40 O ARG A 61 SHEET 4 AA1 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA1 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O ARG A 152 N GLU A 114 SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N ARG A 136 O HIS A 157 SHEET 1 AA2 8 GLU A 77 VAL A 79 0 SHEET 2 AA2 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA2 8 THR A 39 GLY A 43 1 N ILE A 40 O ARG A 61 SHEET 4 AA2 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA2 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O ARG A 152 N GLU A 114 SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14 CISPEP 1 ARG A 55 PRO A 56 0 -0.50 CISPEP 2 GLY A 95 GLY A 96 0 1.00 CRYST1 29.480 67.130 72.140 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033921 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013862 0.00000