HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-DEC-21 5SD1 TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR SDDC-1235 (ENANTIOMER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MTDHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: FOLA, DFRA, RV2763C, MTV002.28C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MYCOBACTERIUM TUBERCULOSIS, DHFR, NADP, FOLATE, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 02-MAR-22 5SD1 1 KEYWDS REVDAT 1 09-FEB-22 5SD1 0 JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.M.DRANOW,D.G.CONRADY,D.FOX III, JRNL AUTH 2 C.M.LUKACS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS,J.ABENDROTH JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS BOUND TO NADP AND SDDC INHIBITOR JRNL TITL 3 SDDC-1235 (ENANTIOMER) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 10105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.770 REMARK 3 FREE R VALUE TEST SET COUNT : 987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1500 - 3.8200 1.00 1403 164 0.1300 0.1689 REMARK 3 2 3.8200 - 3.0400 1.00 1339 143 0.1350 0.1965 REMARK 3 3 3.0400 - 2.6500 1.00 1302 143 0.1588 0.2393 REMARK 3 4 2.6500 - 2.4100 1.00 1300 145 0.1601 0.2340 REMARK 3 5 2.4100 - 2.2400 1.00 1298 140 0.1641 0.2316 REMARK 3 6 2.2400 - 2.1100 1.00 1269 136 0.1609 0.2801 REMARK 3 7 2.1100 - 2.0000 0.91 1207 116 0.1796 0.2463 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -9 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3778 14.1613 6.6281 REMARK 3 T TENSOR REMARK 3 T11: 0.1713 T22: 0.1780 REMARK 3 T33: 0.1880 T12: 0.0052 REMARK 3 T13: -0.0224 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.1413 L22: 0.9324 REMARK 3 L33: 7.0005 L12: 0.0251 REMARK 3 L13: 0.6899 L23: -1.6690 REMARK 3 S TENSOR REMARK 3 S11: -0.1049 S12: 0.0820 S13: 0.0009 REMARK 3 S21: 0.1279 S22: -0.0638 S23: -0.1387 REMARK 3 S31: -0.6921 S32: 0.2417 S33: 0.1217 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1297 -0.2500 23.3098 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.1053 REMARK 3 T33: 0.1273 T12: -0.0261 REMARK 3 T13: 0.0064 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.9964 L22: 4.8342 REMARK 3 L33: 2.7504 L12: 1.2459 REMARK 3 L13: 1.1504 L23: 1.5919 REMARK 3 S TENSOR REMARK 3 S11: 0.2342 S12: -0.2914 S13: -0.2927 REMARK 3 S21: 0.4215 S22: -0.1037 S23: -0.1334 REMARK 3 S31: 0.3309 S32: -0.0951 S33: -0.0991 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7252 8.3545 14.3181 REMARK 3 T TENSOR REMARK 3 T11: 0.1059 T22: 0.1385 REMARK 3 T33: 0.1275 T12: -0.0396 REMARK 3 T13: 0.0000 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 7.8204 L22: 3.5829 REMARK 3 L33: 3.5460 L12: -2.2737 REMARK 3 L13: -4.0078 L23: -0.6845 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: -0.0363 S13: -0.1612 REMARK 3 S21: -0.0710 S22: 0.0606 S23: 0.2686 REMARK 3 S31: 0.3660 S32: -0.5051 S33: -0.0189 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9351 -1.8158 6.6277 REMARK 3 T TENSOR REMARK 3 T11: 0.0873 T22: 0.0924 REMARK 3 T33: 0.0940 T12: 0.0019 REMARK 3 T13: -0.0103 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 3.2697 L22: 5.9972 REMARK 3 L33: 3.4953 L12: -0.1164 REMARK 3 L13: 0.4156 L23: -0.5568 REMARK 3 S TENSOR REMARK 3 S11: 0.1883 S12: 0.0140 S13: -0.1890 REMARK 3 S21: -0.0947 S22: -0.0599 S23: 0.2468 REMARK 3 S31: 0.2428 S32: -0.1658 S33: -0.1090 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8596 -2.8219 0.1786 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.1431 REMARK 3 T33: 0.1476 T12: 0.0171 REMARK 3 T13: 0.0055 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 3.6264 L22: 6.1695 REMARK 3 L33: 2.7202 L12: -1.2107 REMARK 3 L13: 0.0514 L23: -0.5133 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.1760 S13: -0.0804 REMARK 3 S21: -0.2568 S22: -0.0598 S23: -0.4526 REMARK 3 S31: 0.0808 S32: 0.1945 S33: 0.0501 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6126 8.7843 11.0623 REMARK 3 T TENSOR REMARK 3 T11: 0.0897 T22: 0.0830 REMARK 3 T33: 0.0901 T12: -0.0131 REMARK 3 T13: -0.0280 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.7833 L22: 2.6866 REMARK 3 L33: 2.5497 L12: 0.5251 REMARK 3 L13: -1.7650 L23: 0.3028 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: 0.0703 S13: 0.0378 REMARK 3 S21: -0.1512 S22: 0.0450 S23: -0.0415 REMARK 3 S31: -0.0424 S32: 0.0178 S33: -0.1063 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5638 -0.0160 28.9203 REMARK 3 T TENSOR REMARK 3 T11: 0.3236 T22: 0.2040 REMARK 3 T33: 0.3233 T12: 0.0219 REMARK 3 T13: -0.0656 T23: 0.0757 REMARK 3 L TENSOR REMARK 3 L11: 8.0563 L22: 7.1740 REMARK 3 L33: 2.5619 L12: -7.5888 REMARK 3 L13: -4.5382 L23: 4.2578 REMARK 3 S TENSOR REMARK 3 S11: -0.5182 S12: -0.2266 S13: -0.3649 REMARK 3 S21: 0.7704 S22: 0.2817 S23: 0.1945 REMARK 3 S31: 0.3763 S32: 0.1648 S33: 0.2158 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2523 14.2636 18.0977 REMARK 3 T TENSOR REMARK 3 T11: 0.1188 T22: 0.1500 REMARK 3 T33: 0.1241 T12: -0.0244 REMARK 3 T13: -0.0531 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 2.3640 L22: 8.5989 REMARK 3 L33: 4.6218 L12: 2.1284 REMARK 3 L13: -3.0883 L23: -1.5391 REMARK 3 S TENSOR REMARK 3 S11: 0.1341 S12: -0.2615 S13: 0.0682 REMARK 3 S21: -0.0246 S22: -0.0661 S23: -0.8058 REMARK 3 S31: -0.2106 S32: 0.3182 S33: -0.0421 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2666 14.3154 23.2750 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.1409 REMARK 3 T33: 0.0982 T12: -0.0189 REMARK 3 T13: -0.0311 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 5.6770 L22: 1.2407 REMARK 3 L33: 2.8014 L12: 0.5132 REMARK 3 L13: -3.4473 L23: -0.4355 REMARK 3 S TENSOR REMARK 3 S11: 0.1511 S12: -0.0388 S13: 0.2939 REMARK 3 S21: -0.0149 S22: 0.0570 S23: 0.1374 REMARK 3 S31: 0.0264 S32: -0.1042 S33: -0.1926 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1001404354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG2 B6 (291345B6): 200MM SODIUM REMARK 280 FORMATE, 20% (W/V) PEG3350, 10MG/ML PROTEIN CONC., CRYO 15% REMARK 280 ETHYLENE GLYCOL, PUCK PWP0-10, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.72500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.14500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.14500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.72500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -9 OG REMARK 470 LEU A -6 CG CD1 CD2 REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 417 O HOH A 429 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 35.10 -84.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 5SD1 A 1 159 UNP P9WNX1 DYR_MYCTU 3 161 SEQADV 5SD1 MET A -19 UNP P9WNX1 INITIATING METHIONINE SEQADV 5SD1 GLY A -18 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 SER A -17 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 SER A -16 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 HIS A -15 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 HIS A -14 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 HIS A -13 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 HIS A -12 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 HIS A -11 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 HIS A -10 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 SER A -9 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 SER A -8 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 GLY A -7 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 LEU A -6 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 VAL A -5 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 PRO A -4 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 ARG A -3 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 GLY A -2 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 SER A -1 UNP P9WNX1 EXPRESSION TAG SEQADV 5SD1 HIS A 0 UNP P9WNX1 EXPRESSION TAG SEQRES 1 A 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 179 LEU VAL PRO ARG GLY SER HIS MET VAL GLY LEU ILE TRP SEQRES 3 A 179 ALA GLN ALA THR SER GLY VAL ILE GLY ARG GLY GLY ASP SEQRES 4 A 179 ILE PRO TRP ARG LEU PRO GLU ASP GLN ALA HIS PHE ARG SEQRES 5 A 179 GLU ILE THR MET GLY HIS THR ILE VAL MET GLY ARG ARG SEQRES 6 A 179 THR TRP ASP SER LEU PRO ALA LYS VAL ARG PRO LEU PRO SEQRES 7 A 179 GLY ARG ARG ASN VAL VAL LEU SER ARG GLN ALA ASP PHE SEQRES 8 A 179 MET ALA SER GLY ALA GLU VAL VAL GLY SER LEU GLU GLU SEQRES 9 A 179 ALA LEU THR SER PRO GLU THR TRP VAL ILE GLY GLY GLY SEQRES 10 A 179 GLN VAL TYR ALA LEU ALA LEU PRO TYR ALA THR ARG CYS SEQRES 11 A 179 GLU VAL THR GLU VAL ASP ILE GLY LEU PRO ARG GLU ALA SEQRES 12 A 179 GLY ASP ALA LEU ALA PRO VAL LEU ASP GLU THR TRP ARG SEQRES 13 A 179 GLY GLU THR GLY GLU TRP ARG PHE SER ARG SER GLY LEU SEQRES 14 A 179 ARG TYR ARG LEU TYR SER TYR HIS ARG SER HET NAP A 201 48 HET I6J A 202 58 HET EDO A 203 4 HET EDO A 204 4 HET FMT A 205 3 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM I6J (2S)-2-[(2-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 I6J OXY]PROPOXY}PHENYL)METHYL]-3,3-DIFLUOROPROPANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 I6J C19 H24 F2 N4 O4 FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 FMT C H2 O2 FORMUL 7 HOH *139(H2 O) HELIX 1 AA1 LEU A 24 MET A 36 1 13 HELIX 2 AA2 ARG A 44 LEU A 50 1 7 HELIX 3 AA3 PRO A 51 ARG A 55 5 5 HELIX 4 AA4 SER A 81 LEU A 86 1 6 HELIX 5 AA5 GLY A 96 LEU A 104 1 9 HELIX 6 AA6 PRO A 105 ALA A 107 5 3 SHEET 1 AA1 8 GLU A 77 VAL A 79 0 SHEET 2 AA1 8 ASN A 62 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA1 8 THR A 39 GLY A 43 1 N MET A 42 O LEU A 65 SHEET 4 AA1 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA1 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O THR A 113 N GLN A 8 SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O ARG A 152 N GLU A 114 SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N ARG A 136 O HIS A 157 SHEET 1 AA2 8 GLU A 77 VAL A 79 0 SHEET 2 AA2 8 ASN A 62 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA2 8 THR A 39 GLY A 43 1 N MET A 42 O LEU A 65 SHEET 4 AA2 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA2 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O THR A 113 N GLN A 8 SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O ARG A 152 N GLU A 114 SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14 CISPEP 1 ARG A 55 PRO A 56 0 2.95 CISPEP 2 GLY A 95 GLY A 96 0 2.45 CRYST1 29.450 67.320 72.290 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033956 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013833 0.00000