data_5SD6 # _entry.id 5SD6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5SD6 pdb_00005sd6 10.2210/pdb5sd6/pdb WWPDB D_1001404359 ? ? # _pdbx_database_status.entry_id 5SD6 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2021-12-20 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.id primary _citation.journal_abbrev 'to be published' _citation.title 'Crystal Structure of Dihydrofolate Reductase from Homo sapiens bound to NADP and SDDC Inhibitor SDDC-892' _citation.year ? _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mayclin, S.J.' 1 ? primary 'Fairman, J.W.' 2 ? primary 'Dranow, D.M.' 3 ? primary 'Conrady, D.G.' 4 ? primary 'Fox III, D.' 5 ? primary 'Lukacs, C.M.' 6 ? primary 'Lorimer, D.D.' 7 ? primary 'Horanyi, P.S.' 8 ? primary 'Edwards, T.E.' 9 ? primary 'Abendroth, J.' 10 ? # _cell.entry_id 5SD6 _cell.length_a 74.190 _cell.length_b 74.190 _cell.length_c 143.210 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SD6 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.Int_Tables_number 96 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dihydrofolate reductase' 21480.723 1 1.5.1.3 ? 'Human DHFR' ? 2 non-polymer syn 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 743.405 1 ? ? ? ? 3 non-polymer syn '6-ethyl-5-(4-{2-[2-(1H-tetrazol-5-yl)ethyl]phenoxy}butoxy)pyrimidine-2,4-diamine' 398.462 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 6 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 7 water nat water 18.015 127 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSREL KEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLL PEYPGVLSDVQEEKGIKYKFEVYEKND ; _entity_poly.pdbx_seq_one_letter_code_can ;MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSREL KEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLL PEYPGVLSDVQEEKGIKYKFEVYEKND ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 GLY n 1 4 SER n 1 5 LEU n 1 6 ASN n 1 7 CYS n 1 8 ILE n 1 9 VAL n 1 10 ALA n 1 11 VAL n 1 12 SER n 1 13 GLN n 1 14 ASN n 1 15 MET n 1 16 GLY n 1 17 ILE n 1 18 GLY n 1 19 LYS n 1 20 ASN n 1 21 GLY n 1 22 ASP n 1 23 LEU n 1 24 PRO n 1 25 TRP n 1 26 PRO n 1 27 PRO n 1 28 LEU n 1 29 ARG n 1 30 ASN n 1 31 GLU n 1 32 PHE n 1 33 ARG n 1 34 TYR n 1 35 PHE n 1 36 GLN n 1 37 ARG n 1 38 MET n 1 39 THR n 1 40 THR n 1 41 THR n 1 42 SER n 1 43 SER n 1 44 VAL n 1 45 GLU n 1 46 GLY n 1 47 LYS n 1 48 GLN n 1 49 ASN n 1 50 LEU n 1 51 VAL n 1 52 ILE n 1 53 MET n 1 54 GLY n 1 55 LYS n 1 56 LYS n 1 57 THR n 1 58 TRP n 1 59 PHE n 1 60 SER n 1 61 ILE n 1 62 PRO n 1 63 GLU n 1 64 LYS n 1 65 ASN n 1 66 ARG n 1 67 PRO n 1 68 LEU n 1 69 LYS n 1 70 GLY n 1 71 ARG n 1 72 ILE n 1 73 ASN n 1 74 LEU n 1 75 VAL n 1 76 LEU n 1 77 SER n 1 78 ARG n 1 79 GLU n 1 80 LEU n 1 81 LYS n 1 82 GLU n 1 83 PRO n 1 84 PRO n 1 85 GLN n 1 86 GLY n 1 87 ALA n 1 88 HIS n 1 89 PHE n 1 90 LEU n 1 91 SER n 1 92 ARG n 1 93 SER n 1 94 LEU n 1 95 ASP n 1 96 ASP n 1 97 ALA n 1 98 LEU n 1 99 LYS n 1 100 LEU n 1 101 THR n 1 102 GLU n 1 103 GLN n 1 104 PRO n 1 105 GLU n 1 106 LEU n 1 107 ALA n 1 108 ASN n 1 109 LYS n 1 110 VAL n 1 111 ASP n 1 112 MET n 1 113 VAL n 1 114 TRP n 1 115 ILE n 1 116 VAL n 1 117 GLY n 1 118 GLY n 1 119 SER n 1 120 SER n 1 121 VAL n 1 122 TYR n 1 123 LYS n 1 124 GLU n 1 125 ALA n 1 126 MET n 1 127 ASN n 1 128 HIS n 1 129 PRO n 1 130 GLY n 1 131 HIS n 1 132 LEU n 1 133 LYS n 1 134 LEU n 1 135 PHE n 1 136 VAL n 1 137 THR n 1 138 ARG n 1 139 ILE n 1 140 MET n 1 141 GLN n 1 142 ASP n 1 143 PHE n 1 144 GLU n 1 145 SER n 1 146 ASP n 1 147 THR n 1 148 PHE n 1 149 PHE n 1 150 PRO n 1 151 GLU n 1 152 ILE n 1 153 ASP n 1 154 LEU n 1 155 GLU n 1 156 LYS n 1 157 TYR n 1 158 LYS n 1 159 LEU n 1 160 LEU n 1 161 PRO n 1 162 GLU n 1 163 TYR n 1 164 PRO n 1 165 GLY n 1 166 VAL n 1 167 LEU n 1 168 SER n 1 169 ASP n 1 170 VAL n 1 171 GLN n 1 172 GLU n 1 173 GLU n 1 174 LYS n 1 175 GLY n 1 176 ILE n 1 177 LYS n 1 178 TYR n 1 179 LYS n 1 180 PHE n 1 181 GLU n 1 182 VAL n 1 183 TYR n 1 184 GLU n 1 185 LYS n 1 186 ASN n 1 187 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 187 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene DHFR _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DYR_HUMAN _struct_ref.pdbx_db_accession P00374 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSREL KEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLL PEYPGVLSDVQEEKGIKYKFEVYEKND ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5SD6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 187 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00374 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 187 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 187 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 HXV non-polymer . '6-ethyl-5-(4-{2-[2-(1H-tetrazol-5-yl)ethyl]phenoxy}butoxy)pyrimidine-2,4-diamine' ? 'C19 H26 N8 O2' 398.462 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAP non-polymer . 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' ;2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE ; 'C21 H28 N7 O17 P3' 743.405 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 5SD6 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 73.18 _exptl_crystal.density_Matthews 4.59 _exptl_crystal.pdbx_mosaicity 0.17 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH . _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details ;MCSG2 E5 (273901e5): 200mM Lithium sulfate, 100mM Sodium acetate:Acetic acid pH4.5, 20% (w/v) PEG8000; prot conc 26mg/mL, cryo 20% EG, puck ogi6-6 ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-300' _diffrn_detector.pdbx_collection_date 2016-07-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'C 111' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_wavelength_list 0.97872 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 5SD6 _reflns.pdbx_diffrn_id 1 _reflns.d_resolution_high 2.150 _reflns.d_resolution_low 50 _reflns.pdbx_number_measured_all 170145 _reflns.number_obs 22057 _reflns.pdbx_Rmerge_I_obs 0.066 _reflns.pdbx_netI_over_sigmaI 22.110 _reflns.percent_possible_obs 98.000 _reflns.B_iso_Wilson_estimate 41.460 _reflns.Rmerge_F_obs 0.999 _reflns.observed_criterion_sigma_I -3.000 _reflns.pdbx_Rrim_I_all 0.070 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_Rpim_I_all ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star 2.150 2.210 12386 ? 1590 ? 0.597 3.190 ? ? ? ? ? 1603 ? ? 0.874 ? ? 99.200 0.634 ? ? 1 ? ? 2.210 2.270 12340 ? 1582 ? 0.482 3.880 ? ? ? ? ? 1597 ? ? 0.937 ? ? 99.100 0.512 ? ? 2 ? ? 2.270 2.330 11907 ? 1538 ? 0.372 4.970 ? ? ? ? ? 1552 ? ? 0.943 ? ? 99.100 0.395 ? ? 3 ? ? 2.330 2.400 11643 ? 1491 ? 0.327 5.770 ? ? ? ? ? 1504 ? ? 0.958 ? ? 99.100 0.346 ? ? 4 ? ? 2.400 2.480 11153 ? 1432 ? 0.285 6.510 ? ? ? ? ? 1448 ? ? 0.978 ? ? 98.900 0.302 ? ? 5 ? ? 2.480 2.570 10910 ? 1396 ? 0.226 8.270 ? ? ? ? ? 1413 ? ? 0.978 ? ? 98.800 0.239 ? ? 6 ? ? 2.570 2.670 10440 ? 1347 ? 0.187 10.300 ? ? ? ? ? 1366 ? ? 0.985 ? ? 98.600 0.198 ? ? 7 ? ? 2.670 2.780 10226 ? 1307 ? 0.153 12.280 ? ? ? ? ? 1326 ? ? 0.991 ? ? 98.600 0.162 ? ? 8 ? ? 2.780 2.900 9599 ? 1233 ? 0.112 16.270 ? ? ? ? ? 1254 ? ? 0.996 ? ? 98.300 0.118 ? ? 9 ? ? 2.900 3.040 9390 ? 1196 ? 0.089 20.070 ? ? ? ? ? 1227 ? ? 0.997 ? ? 97.500 0.094 ? ? 10 ? ? 3.040 3.210 8686 ? 1121 ? 0.070 25.310 ? ? ? ? ? 1153 ? ? 0.998 ? ? 97.200 0.074 ? ? 11 ? ? 3.210 3.400 8390 ? 1088 ? 0.054 32.280 ? ? ? ? ? 1113 ? ? 0.999 ? ? 97.800 0.057 ? ? 12 ? ? 3.400 3.630 7813 ? 1011 ? 0.040 42.880 ? ? ? ? ? 1031 ? ? 0.999 ? ? 98.100 0.042 ? ? 13 ? ? 3.630 3.930 7346 ? 959 ? 0.036 47.110 ? ? ? ? ? 986 ? ? 0.999 ? ? 97.300 0.038 ? ? 14 ? ? 3.930 4.300 6710 ? 880 ? 0.031 53.820 ? ? ? ? ? 898 ? ? 0.999 ? ? 98.000 0.033 ? ? 15 ? ? 4.300 4.810 6007 ? 804 ? 0.029 57.090 ? ? ? ? ? 830 ? ? 0.999 ? ? 96.900 0.030 ? ? 16 ? ? 4.810 5.550 5354 ? 711 ? 0.027 56.810 ? ? ? ? ? 735 ? ? 0.999 ? ? 96.700 0.029 ? ? 17 ? ? 5.550 6.800 4519 ? 609 ? 0.027 53.200 ? ? ? ? ? 634 ? ? 0.999 ? ? 96.100 0.029 ? ? 18 ? ? 6.800 9.620 3518 ? 485 ? 0.022 61.240 ? ? ? ? ? 512 ? ? 1.000 ? ? 94.700 0.023 ? ? 19 ? ? 9.620 ? 1808 ? 277 ? 0.020 63.530 ? ? ? ? ? 314 ? ? 1.000 ? ? 88.200 0.021 ? ? 20 ? ? # _refine.entry_id 5SD6 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.1500 _refine.ls_d_res_low 40.1440 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.0500 _refine.ls_number_reflns_obs 22053 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1705 _refine.ls_R_factor_R_work 0.1670 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2044 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.0100 _refine.ls_number_reflns_R_free 1986 _refine.ls_number_reflns_R_work 20067 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 38.7809 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2100 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 118.480 _refine.B_iso_min 17.390 _refine.pdbx_overall_phase_error 20.2600 _refine.occupancy_max 1.000 _refine.occupancy_min 0.000 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1482 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 103 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 1712 _refine_hist.d_res_high 2.1500 _refine_hist.d_res_low 40.1440 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1683 0.007 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2296 0.946 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 243 0.061 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 286 0.005 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 1702 9.632 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs 2.1501 2.2038 14 99.0000 1388 . 0.2298 0.2835 . 137 . 1525 . 'X-RAY DIFFRACTION' . 2.2038 2.2634 14 99.0000 1433 . 0.2041 0.2707 . 132 . 1565 . 'X-RAY DIFFRACTION' . 2.2634 2.3300 14 99.0000 1446 . 0.1909 0.2310 . 126 . 1572 . 'X-RAY DIFFRACTION' . 2.3300 2.4052 14 99.0000 1442 . 0.1883 0.2265 . 118 . 1560 . 'X-RAY DIFFRACTION' . 2.4052 2.4912 14 99.0000 1410 . 0.1882 0.2200 . 143 . 1553 . 'X-RAY DIFFRACTION' . 2.4912 2.5909 14 99.0000 1428 . 0.1907 0.2440 . 130 . 1558 . 'X-RAY DIFFRACTION' . 2.5909 2.7088 14 99.0000 1411 . 0.1850 0.2579 . 154 . 1565 . 'X-RAY DIFFRACTION' . 2.7088 2.8515 14 98.0000 1413 . 0.1813 0.2099 . 155 . 1568 . 'X-RAY DIFFRACTION' . 2.8515 3.0301 14 98.0000 1403 . 0.1794 0.2251 . 149 . 1552 . 'X-RAY DIFFRACTION' . 3.0301 3.2640 14 98.0000 1439 . 0.1784 0.2249 . 141 . 1580 . 'X-RAY DIFFRACTION' . 3.2640 3.5923 14 98.0000 1445 . 0.1562 0.1778 . 133 . 1578 . 'X-RAY DIFFRACTION' . 3.5923 4.1117 14 97.0000 1442 . 0.1363 0.1874 . 150 . 1592 . 'X-RAY DIFFRACTION' . 4.1117 5.1785 14 98.0000 1455 . 0.1340 0.1648 . 158 . 1613 . 'X-RAY DIFFRACTION' . 5.1785 40.1514 14 94.0000 1512 . 0.1811 0.2007 . 160 . 1672 . 'X-RAY DIFFRACTION' . # _struct.entry_id 5SD6 _struct.title 'Crystal Structure of Dihydrofolate Reductase from Homo sapiens bound to NADP and SDDC Inhibitor SDDC-892' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5SD6 _struct_keywords.text ;Homo sapiens, DHFR, NADP, Folate, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR complex, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID ; _struct_keywords.pdbx_keywords 'OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 6 ? K N N 6 ? L N N 7 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is a monomer, the same as asu' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 28 ? THR A 41 ? LEU A 28 THR A 41 1 ? 14 HELX_P HELX_P2 AA2 LYS A 55 ? ILE A 61 ? LYS A 55 ILE A 61 1 ? 7 HELX_P HELX_P3 AA3 PRO A 62 ? ARG A 66 ? PRO A 62 ARG A 66 5 ? 5 HELX_P HELX_P4 AA4 SER A 93 ? THR A 101 ? SER A 93 THR A 101 1 ? 9 HELX_P HELX_P5 AA5 GLN A 103 ? ASN A 108 ? GLN A 103 ASN A 108 1 ? 6 HELX_P HELX_P6 AA6 GLY A 118 ? HIS A 128 ? GLY A 118 HIS A 128 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 66 A . ? ARG 66 A PRO 67 A ? PRO 67 A 1 -6.04 2 ARG 66 A . ? ARG 66 A PRO 67 A ? PRO 67 A 1 -5.72 3 GLY 117 A . ? GLY 117 A GLY 118 A ? GLY 118 A 1 2.03 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 8 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA2 6 7 ? anti-parallel AA2 7 8 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 89 ? SER A 91 ? PHE A 89 SER A 91 AA1 2 ILE A 72 ? LEU A 76 ? ILE A 72 LEU A 76 AA1 3 GLN A 48 ? GLY A 54 ? GLN A 48 GLY A 54 AA1 4 VAL A 110 ? ILE A 115 ? VAL A 110 ILE A 115 AA1 5 LEU A 5 ? VAL A 11 ? LEU A 5 VAL A 11 AA1 6 HIS A 131 ? ILE A 139 ? HIS A 131 ILE A 139 AA1 7 ILE A 176 ? ASN A 186 ? ILE A 176 ASN A 186 AA1 8 LYS A 158 ? LEU A 160 ? LYS A 158 LEU A 160 AA2 1 PHE A 89 ? SER A 91 ? PHE A 89 SER A 91 AA2 2 ILE A 72 ? LEU A 76 ? ILE A 72 LEU A 76 AA2 3 GLN A 48 ? GLY A 54 ? GLN A 48 GLY A 54 AA2 4 VAL A 110 ? ILE A 115 ? VAL A 110 ILE A 115 AA2 5 LEU A 5 ? VAL A 11 ? LEU A 5 VAL A 11 AA2 6 HIS A 131 ? ILE A 139 ? HIS A 131 ILE A 139 AA2 7 ILE A 176 ? ASN A 186 ? ILE A 176 ASN A 186 AA2 8 GLN A 171 ? GLU A 173 ? GLN A 171 GLU A 173 AA3 1 GLY A 16 ? GLY A 18 ? GLY A 16 GLY A 18 AA3 2 THR A 147 ? PHE A 148 ? THR A 147 PHE A 148 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O SER A 91 ? O SER A 91 N VAL A 75 ? N VAL A 75 AA1 2 3 O ILE A 72 ? O ILE A 72 N VAL A 51 ? N VAL A 51 AA1 3 4 N LEU A 50 ? N LEU A 50 O TRP A 114 ? O TRP A 114 AA1 4 5 O ILE A 115 ? O ILE A 115 N ASN A 6 ? N ASN A 6 AA1 5 6 N CYS A 7 ? N CYS A 7 O PHE A 135 ? O PHE A 135 AA1 6 7 N ARG A 138 ? N ARG A 138 O LYS A 179 ? O LYS A 179 AA1 7 8 O GLU A 184 ? O GLU A 184 N LYS A 158 ? N LYS A 158 AA2 1 2 O SER A 91 ? O SER A 91 N VAL A 75 ? N VAL A 75 AA2 2 3 O ILE A 72 ? O ILE A 72 N VAL A 51 ? N VAL A 51 AA2 3 4 N LEU A 50 ? N LEU A 50 O TRP A 114 ? O TRP A 114 AA2 4 5 O ILE A 115 ? O ILE A 115 N ASN A 6 ? N ASN A 6 AA2 5 6 N CYS A 7 ? N CYS A 7 O PHE A 135 ? O PHE A 135 AA2 6 7 N ARG A 138 ? N ARG A 138 O LYS A 179 ? O LYS A 179 AA2 7 8 O TYR A 178 ? O TYR A 178 N GLN A 171 ? N GLN A 171 AA3 1 2 N ILE A 17 ? N ILE A 17 O THR A 147 ? O THR A 147 # _atom_sites.entry_id 5SD6 _atom_sites.fract_transf_matrix[1][1] 0.013479 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013479 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006983 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 MET 15 15 15 MET MET A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 TRP 25 25 25 TRP TRP A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 TRP 58 58 58 TRP TRP A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 MET 112 112 112 MET MET A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 TRP 114 114 114 TRP TRP A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 TYR 122 122 122 TYR TYR A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 MET 126 126 126 MET MET A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 HIS 128 128 128 HIS HIS A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 HIS 131 131 131 HIS HIS A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 LYS 133 133 133 LYS LYS A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 MET 140 140 140 MET MET A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 ASP 142 142 142 ASP ASP A . n A 1 143 PHE 143 143 143 PHE PHE A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 ASP 146 146 146 ASP ASP A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 PHE 148 148 148 PHE PHE A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 PRO 150 150 150 PRO PRO A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 LEU 154 154 154 LEU LEU A . n A 1 155 GLU 155 155 155 GLU GLU A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 PRO 161 161 161 PRO PRO A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 TYR 163 163 163 TYR TYR A . n A 1 164 PRO 164 164 164 PRO PRO A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 VAL 166 166 166 VAL VAL A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 SER 168 168 168 SER SER A . n A 1 169 ASP 169 169 169 ASP ASP A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 GLN 171 171 171 GLN GLN A . n A 1 172 GLU 172 172 172 GLU GLU A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 GLY 175 175 175 GLY GLY A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 TYR 178 178 178 TYR TYR A . n A 1 179 LYS 179 179 179 LYS LYS A . n A 1 180 PHE 180 180 180 PHE PHE A . n A 1 181 GLU 181 181 181 GLU GLU A . n A 1 182 VAL 182 182 182 VAL VAL A . n A 1 183 TYR 183 183 183 TYR TYR A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 LYS 185 185 185 LYS LYS A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 ASP 187 187 187 ASP ASP A . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 isabelle.phan@seattlechildrens.org Isabelle Phan ? 'principal investigator/group leader' 0000-0001-6873-3401 3 peter.myler@seattlechildrens.org Peter Myler ? 'principal investigator/group leader' 0000-0002-0056-0513 4 julie.early@seattlechildrens.org Julie Early ? 'principal investigator/group leader' 0000-0003-1224-2747 5 donald.lorimer@ucb.com Don Lorimer ? 'principal investigator/group leader' 0000-0002-9638-8083 6 peter.horanyi@ucb.com Peter Horanyi ? 'principal investigator/group leader' 0000-0003-2218-9986 7 tom.edwards@ucb.com Tom Edwards ? 'principal investigator/group leader' 0000-0002-0474-8003 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP 1 201 190 NAP NAP A . C 3 HXV 1 202 191 HXV LIG A . D 4 EDO 1 203 192 EDO EDO A . E 4 EDO 1 204 193 EDO EDO A . F 5 SO4 1 205 194 SO4 SO4 A . G 5 SO4 1 206 195 SO4 SO4 A . H 5 SO4 1 207 196 SO4 SO4 A . I 6 CL 1 208 197 CL CL A . J 6 CL 1 209 198 CL CL A . K 6 CL 1 210 199 CL CL A . L 7 HOH 1 301 90 HOH HOH A . L 7 HOH 2 302 106 HOH HOH A . L 7 HOH 3 303 115 HOH HOH A . L 7 HOH 4 304 97 HOH HOH A . L 7 HOH 5 305 119 HOH HOH A . L 7 HOH 6 306 43 HOH HOH A . L 7 HOH 7 307 93 HOH HOH A . L 7 HOH 8 308 49 HOH HOH A . L 7 HOH 9 309 42 HOH HOH A . L 7 HOH 10 310 35 HOH HOH A . L 7 HOH 11 311 14 HOH HOH A . L 7 HOH 12 312 16 HOH HOH A . L 7 HOH 13 313 36 HOH HOH A . L 7 HOH 14 314 44 HOH HOH A . L 7 HOH 15 315 84 HOH HOH A . L 7 HOH 16 316 3 HOH HOH A . L 7 HOH 17 317 24 HOH HOH A . L 7 HOH 18 318 50 HOH HOH A . L 7 HOH 19 319 15 HOH HOH A . L 7 HOH 20 320 13 HOH HOH A . L 7 HOH 21 321 17 HOH HOH A . L 7 HOH 22 322 7 HOH HOH A . L 7 HOH 23 323 5 HOH HOH A . L 7 HOH 24 324 40 HOH HOH A . L 7 HOH 25 325 72 HOH HOH A . L 7 HOH 26 326 22 HOH HOH A . L 7 HOH 27 327 81 HOH HOH A . L 7 HOH 28 328 123 HOH HOH A . L 7 HOH 29 329 121 HOH HOH A . L 7 HOH 30 330 27 HOH HOH A . L 7 HOH 31 331 67 HOH HOH A . L 7 HOH 32 332 8 HOH HOH A . L 7 HOH 33 333 60 HOH HOH A . L 7 HOH 34 334 86 HOH HOH A . L 7 HOH 35 335 12 HOH HOH A . L 7 HOH 36 336 18 HOH HOH A . L 7 HOH 37 337 65 HOH HOH A . L 7 HOH 38 338 103 HOH HOH A . L 7 HOH 39 339 95 HOH HOH A . L 7 HOH 40 340 19 HOH HOH A . L 7 HOH 41 341 23 HOH HOH A . L 7 HOH 42 342 32 HOH HOH A . L 7 HOH 43 343 21 HOH HOH A . L 7 HOH 44 344 110 HOH HOH A . L 7 HOH 45 345 1 HOH HOH A . L 7 HOH 46 346 25 HOH HOH A . L 7 HOH 47 347 52 HOH HOH A . L 7 HOH 48 348 33 HOH HOH A . L 7 HOH 49 349 53 HOH HOH A . L 7 HOH 50 350 78 HOH HOH A . L 7 HOH 51 351 2 HOH HOH A . L 7 HOH 52 352 105 HOH HOH A . L 7 HOH 53 353 45 HOH HOH A . L 7 HOH 54 354 37 HOH HOH A . L 7 HOH 55 355 38 HOH HOH A . L 7 HOH 56 356 71 HOH HOH A . L 7 HOH 57 357 114 HOH HOH A . L 7 HOH 58 358 31 HOH HOH A . L 7 HOH 59 359 11 HOH HOH A . L 7 HOH 60 360 99 HOH HOH A . L 7 HOH 61 361 113 HOH HOH A . L 7 HOH 62 362 70 HOH HOH A . L 7 HOH 63 363 100 HOH HOH A . L 7 HOH 64 364 20 HOH HOH A . L 7 HOH 65 365 41 HOH HOH A . L 7 HOH 66 366 98 HOH HOH A . L 7 HOH 67 367 79 HOH HOH A . L 7 HOH 68 368 112 HOH HOH A . L 7 HOH 69 369 10 HOH HOH A . L 7 HOH 70 370 58 HOH HOH A . L 7 HOH 71 371 57 HOH HOH A . L 7 HOH 72 372 63 HOH HOH A . L 7 HOH 73 373 91 HOH HOH A . L 7 HOH 74 374 26 HOH HOH A . L 7 HOH 75 375 30 HOH HOH A . L 7 HOH 76 376 48 HOH HOH A . L 7 HOH 77 377 124 HOH HOH A . L 7 HOH 78 378 117 HOH HOH A . L 7 HOH 79 379 128 HOH HOH A . L 7 HOH 80 380 54 HOH HOH A . L 7 HOH 81 381 9 HOH HOH A . L 7 HOH 82 382 66 HOH HOH A . L 7 HOH 83 383 51 HOH HOH A . L 7 HOH 84 384 131 HOH HOH A . L 7 HOH 85 385 28 HOH HOH A . L 7 HOH 86 386 92 HOH HOH A . L 7 HOH 87 387 89 HOH HOH A . L 7 HOH 88 388 85 HOH HOH A . L 7 HOH 89 389 125 HOH HOH A . L 7 HOH 90 390 82 HOH HOH A . L 7 HOH 91 391 47 HOH HOH A . L 7 HOH 92 392 127 HOH HOH A . L 7 HOH 93 393 102 HOH HOH A . L 7 HOH 94 394 55 HOH HOH A . L 7 HOH 95 395 61 HOH HOH A . L 7 HOH 96 396 75 HOH HOH A . L 7 HOH 97 397 64 HOH HOH A . L 7 HOH 98 398 39 HOH HOH A . L 7 HOH 99 399 132 HOH HOH A . L 7 HOH 100 400 126 HOH HOH A . L 7 HOH 101 401 88 HOH HOH A . L 7 HOH 102 402 120 HOH HOH A . L 7 HOH 103 403 73 HOH HOH A . L 7 HOH 104 404 34 HOH HOH A . L 7 HOH 105 405 130 HOH HOH A . L 7 HOH 106 406 118 HOH HOH A . L 7 HOH 107 407 108 HOH HOH A . L 7 HOH 108 408 129 HOH HOH A . L 7 HOH 109 409 46 HOH HOH A . L 7 HOH 110 410 80 HOH HOH A . L 7 HOH 111 411 122 HOH HOH A . L 7 HOH 112 412 83 HOH HOH A . L 7 HOH 113 413 111 HOH HOH A . L 7 HOH 114 414 69 HOH HOH A . L 7 HOH 115 415 59 HOH HOH A . L 7 HOH 116 416 135 HOH HOH A . L 7 HOH 117 417 29 HOH HOH A . L 7 HOH 118 418 74 HOH HOH A . L 7 HOH 119 419 96 HOH HOH A . L 7 HOH 120 420 134 HOH HOH A . L 7 HOH 121 421 101 HOH HOH A . L 7 HOH 122 422 56 HOH HOH A . L 7 HOH 123 423 62 HOH HOH A . L 7 HOH 124 424 107 HOH HOH A . L 7 HOH 125 425 77 HOH HOH A . L 7 HOH 126 426 133 HOH HOH A . L 7 HOH 127 427 76 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 314 ? L HOH . 2 1 A HOH 404 ? L HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-09 2 'Structure model' 1 1 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_SG_project 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' struct_keywords # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.SG_entry' 2 2 'Structure model' '_struct_keywords.text' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -30.3210 14.3987 -22.0108 0.1816 0.2095 0.2206 -0.0031 0.0387 0.0187 7.7450 4.7449 6.1780 -0.0798 1.5715 -1.0104 0.0685 0.0840 -0.1099 -0.1506 -0.4194 0.3770 0.0891 -0.1418 -0.2557 'X-RAY DIFFRACTION' 2 ? refined -22.8326 11.1878 -32.7188 0.2683 0.2806 0.2084 -0.0390 0.0150 0.0228 3.2157 3.9089 6.6319 -2.0689 4.0781 -3.2726 -0.1636 0.0569 0.1561 -0.0352 -0.1117 -0.0713 -0.5234 0.2629 -0.0362 'X-RAY DIFFRACTION' 3 ? refined -24.5933 -0.0018 -25.5547 0.2501 0.1495 0.1688 -0.0222 -0.0399 -0.0041 5.8776 5.7438 6.8111 -1.7012 -0.5566 -0.6980 0.1358 0.0083 -0.1283 0.2289 -0.2633 0.1243 -0.3621 0.4021 -0.1609 'X-RAY DIFFRACTION' 4 ? refined -29.3474 -8.0014 -16.1712 0.3196 0.2873 0.3310 0.0273 -0.0197 0.1125 6.8724 2.7875 9.0352 3.3646 4.5396 4.6154 0.2818 -0.0518 -0.1840 -0.0294 -0.4411 0.4260 -0.0284 0.7719 -0.3620 'X-RAY DIFFRACTION' 5 ? refined -18.2753 1.3198 -15.7284 0.2034 0.2513 0.1986 -0.0312 -0.0216 0.0065 5.3777 8.1306 4.4996 -2.2470 0.9406 -3.4124 -0.0517 -0.0304 0.0667 -0.1330 -0.0520 -0.3841 0.1040 0.0609 0.2608 'X-RAY DIFFRACTION' 6 ? refined -18.9978 15.5468 -17.9682 0.3325 0.3165 0.3840 -0.0753 -0.0827 0.0561 3.8782 5.4853 8.9322 -4.1633 4.3393 -2.6948 0.4435 0.0110 -0.5019 -0.6915 -0.6372 -0.0983 0.1671 0.2982 -0.0957 'X-RAY DIFFRACTION' 7 ? refined -35.8293 18.8248 -19.8663 0.4109 0.4079 0.3714 0.1218 0.0936 -0.0450 7.5628 3.8374 3.5206 3.7579 -2.9410 -3.3537 0.3589 0.0933 -0.4681 -0.4089 0.4254 0.8271 0.6149 -0.5862 -0.3811 'X-RAY DIFFRACTION' 8 ? refined -20.7643 22.4401 -23.6684 0.2392 0.2243 0.1993 0.0453 0.0034 -0.0095 4.2839 4.6676 3.9311 1.9251 2.0300 0.8889 0.1594 0.0099 -0.1732 -0.3624 0.1644 0.0853 0.2304 -0.0821 -0.2872 'X-RAY DIFFRACTION' 9 ? refined -20.3250 20.4623 -21.9109 0.2079 0.2530 0.2083 -0.0131 0.0493 0.0014 9.3287 8.2694 8.4985 -0.9403 4.8701 -1.2550 0.0978 -0.0340 -0.0070 -0.1975 0.1529 -0.3587 0.5060 -0.0356 0.5053 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resid 2 through 28 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resid 29 through 40 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 ;chain 'A' and (resid 41 through 76 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 0 A 0 ;chain 'A' and (resid 77 through 88 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 0 A 0 ;chain 'A' and (resid 89 through 127 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 0 A 0 ;chain 'A' and (resid 128 through 139 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 0 A 0 ;chain 'A' and (resid 140 through 149 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 0 A 0 ;chain 'A' and (resid 150 through 175 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 0 A 0 ;chain 'A' and (resid 176 through 187 ) ; ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_2481 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.11 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 6 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 7 # _pdbx_entry_details.entry_id 5SD6 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 22 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 301 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 77 ? ? -171.12 139.98 2 1 ASP A 111 ? ? -94.58 -98.39 3 1 MET A 140 ? ? -90.12 50.39 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 427 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.76 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 1 ? CG ? A MET 1 CG 2 1 Y 1 A MET 1 ? SD ? A MET 1 SD 3 1 Y 1 A MET 1 ? CE ? A MET 1 CE 4 1 Y 1 A GLU 45 ? CG ? A GLU 45 CG 5 1 Y 1 A GLU 45 ? CD ? A GLU 45 CD 6 1 Y 1 A GLU 45 ? OE1 ? A GLU 45 OE1 7 1 Y 1 A GLU 45 ? OE2 ? A GLU 45 OE2 8 1 Y 1 A GLN 85 ? CG ? A GLN 85 CG 9 1 Y 1 A GLN 85 ? CD ? A GLN 85 CD 10 1 Y 1 A GLN 85 ? OE1 ? A GLN 85 OE1 11 1 Y 1 A GLN 85 ? NE2 ? A GLN 85 NE2 12 1 Y 0 A ASP 95 ? CA B A ASP 95 CA 13 1 Y 0 A ASP 95 ? CB B A ASP 95 CB 14 1 Y 1 A LYS 123 ? CG ? A LYS 123 CG 15 1 Y 1 A LYS 123 ? CD ? A LYS 123 CD 16 1 Y 1 A LYS 123 ? CE ? A LYS 123 CE 17 1 Y 1 A LYS 123 ? NZ ? A LYS 123 NZ 18 1 Y 1 A GLU 144 ? CG ? A GLU 144 CG 19 1 Y 1 A GLU 144 ? CD ? A GLU 144 CD 20 1 Y 1 A GLU 144 ? OE1 ? A GLU 144 OE1 21 1 Y 1 A GLU 144 ? OE2 ? A GLU 144 OE2 22 1 Y 1 A LYS 156 ? CG ? A LYS 156 CG 23 1 Y 1 A LYS 156 ? CD ? A LYS 156 CD 24 1 Y 1 A LYS 156 ? CE ? A LYS 156 CE 25 1 Y 1 A LYS 156 ? NZ ? A LYS 156 NZ 26 1 Y 1 A LYS 179 ? CG ? A LYS 179 CG 27 1 Y 1 A LYS 179 ? CD ? A LYS 179 CD 28 1 Y 1 A LYS 179 ? CE ? A LYS 179 CE 29 1 Y 1 A LYS 179 ? NZ ? A LYS 179 NZ # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number HHSN272201700059C _pdbx_audit_support.ordinal 1 # _pdbx_deposit_group.group_title 'DHFR structures, SSGCID' _pdbx_deposit_group.group_description 'human and M. tuberculosis DHFR structures bound to ligands' _pdbx_deposit_group.group_type 'ground state' _pdbx_deposit_group.group_id G_1002223 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id HXV _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id HXV _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' NAP 3 '6-ethyl-5-(4-{2-[2-(1H-tetrazol-5-yl)ethyl]phenoxy}butoxy)pyrimidine-2,4-diamine' HXV 4 1,2-ETHANEDIOL EDO 5 'SULFATE ION' SO4 6 'CHLORIDE ION' CL 7 water HOH #